FastQCFastQC Report
Thu 8 Sep 2022
Geo_Pool_M_CTTGTA_L006_R1_001.fastp-trim.20220908.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeo_Pool_M_CTTGTA_L006_R1_001.fastp-trim.20220908.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114683744
Sequences flagged as poor quality0
Sequence length15-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAAC3018220.26317766535421094No Hit
AAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAG2041210.17798599250474417No Hit
GCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTAGCCTGCTAAA2033090.1772779584175417No Hit
CACGCTTTCACGGTCTGTATTCGTACTGAAAATCAAAATCAAGTGAGCTT1998470.17425922195215393No Hit
CTAACATGTGCGCGAGTCATGGGGTCTTACGAAACCCAAAGGCGCAATGA1891430.16492572827060825No Hit
CTCCTATCTCTTAGGGCCGACTGACCCATGTTCAACTGCTGTTCACATGG1853700.16163581126196927No Hit
GTCGGATTCCCCTGGTCCGTACCAGTTCTAAGTTGACTGTTAGTCGCCGG1637580.14279094341391577No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA1630200.14214743460067017No Hit
GGACACTGCAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCGGTGGGT1603630.13983062848035377No Hit
GGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAA1602640.13974430412735742No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTA1563370.13632010479183518No Hit
GCTCAATCTCGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTGGCGA1365600.11907528934527983No Hit
GTCAACACCAGGTGACGGCCATCGCAATGCTTTGTTTTAATTAGACAGTC1314830.11464833237394133No Hit
GTCGGAACCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAG1304190.11372056357002087No Hit
GTCAGAACTACGACGGTATCTGATCGTCTTCGAACCTCTGACTTTCGTTC1294770.11289917427181309No Hit
GTGAACTATGCCTGAGTAGGACGAAGTCAGAGGAAACTCTGATGGAGGTC1270470.11078030378917521No Hit
GGAGGACCGACCGATTCGCCACTGACCCTAGGCGTTCCCAGGCGTACGAG1259010.10978103400600525No Hit
GCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAG1211310.10562176972527162No Hit
GAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG1202270.10483351502720385No Hit
CGGGGAGGTAGTGACGAAAAATAACAATACGGGACTCTTTCGAGGCCCCG1180890.10296925778774714No Hit
GCAGAAATCACATTGCGTCAACACCAGGTGACGGCCATCGCAATGCTTTG1161740.10129944833332265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)