[2022-08-28 00:09:50,058] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2022-08-28 00:09:50,113] multiqc [DEBUG ] Loading config settings from: /usr/lusers/samwhite/.multiqc_config.yaml [2022-08-28 00:09:50,114] multiqc [DEBUG ] New config 'star': {'fn': '*Log.final.out'} [2022-08-28 00:09:50,114] multiqc [DEBUG ] New config 'star/genecounts': {'fn': '*ReadsPerGene.out.tab'} [2022-08-28 00:09:50,114] multiqc [DEBUG ] Added to filename patterns: {'fastp': {'fn': '*report.json'}} [2022-08-28 00:09:50,114] multiqc [DEBUG ] New config 'hisat2': {'contents': 'HISAT2 summary stats:', 'shared': True} [2022-08-28 00:09:50,115] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-08-28 00:09:50,115] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2022-08-28 00:09:55,435] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2022-08-28 00:09:55,435] multiqc [INFO ] This is MultiQC v1.8 [2022-08-28 00:09:55,438] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2022-08-28 00:09:55,438] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/samwhite/outputs/20220826-cvir-larvae_zygote-BSseq-fastp_trimming [2022-08-28 00:09:55,438] multiqc [INFO ] Template : default [2022-08-28 00:09:55,438] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2022-08-28 00:09:55,438] multiqc [INFO ] Searching : /gscratch/scrubbed/samwhite/outputs/20220826-cvir-larvae_zygote-BSseq-fastp_trimming [2022-08-28 00:09:55,439] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2022-08-28 00:09:55,439] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpwotnh0es [2022-08-28 00:09:56,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM01-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:56,995] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM02-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM05-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM01-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM01-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM05-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,011] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM01-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,012] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM02-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM03-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM05-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM04-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM01-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM05-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF02-EM02-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF01-EM01-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM04-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM01-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM01-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,016] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed-fastq-checksums.md5 [2022-08-28 00:09:57,016] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM01-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,016] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM05-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM05-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM04-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-3613293.out [2022-08-28 00:09:57,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-3613293.out [2022-08-28 00:09:57,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM04-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 20220826-cvir-larvae_zygote-BSseq-fastp_trimming.sh [2022-08-28 00:09:57,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 20220826-cvir-larvae_zygote-BSseq-fastp_trimming.sh [2022-08-28 00:09:57,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM02-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM02-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM01-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF01-EM01-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM05-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM02-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM04-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF07-CM02-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF07-CM02-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF07-CM02-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM03-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM01-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM02-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF04-CM04-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM06-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM02-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM03-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF02-CM02-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF02-EM02-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM03-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM06-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM01-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM01-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM04-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM05-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM03-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF04-CM04-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM01-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM04-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM05-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF02-EM02-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM04-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM02-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM05-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM02-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM03-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM02-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM02-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM06-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM03-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM03-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM01-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM03-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM06-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM06-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM04-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM05-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM05-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM03-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM02-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: raw-fastq-checksums.md5 [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM04-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM04-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF01-EM01-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM01-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM05-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM03-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: input-fastq-checksums.md5 [2022-08-28 00:09:57,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM03-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF02-CM02-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF04-CM04-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM05-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM03-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM06-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF02-CM02-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM04-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM05-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM04-Zygote_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM05-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM05-Larvae_R1_001.fastp-trim.20220827.report.html [2022-08-28 00:09:57,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM05-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM04-Larvae_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM03-Zygote_R2_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM03-Zygote_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:09:57,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM04-Larvae_R1_001.fastp-trim.20220827.fq.gz [2022-08-28 00:10:01,655] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2022-08-28 00:10:01,669] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2022-08-28 00:10:01,697] multiqc [DEBUG ] No samples found: custom_content [2022-08-28 00:10:01,722] multiqc [DEBUG ] No samples found: conpair [2022-08-28 00:10:01,770] multiqc [DEBUG ] No samples found: peddy [2022-08-28 00:10:01,828] multiqc [DEBUG ] No samples found: methylQA [2022-08-28 00:10:01,988] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-08-28 00:10:02,080] multiqc [DEBUG ] No samples found: qualimap [2022-08-28 00:10:02,117] multiqc [DEBUG ] No samples found: preseq [2022-08-28 00:10:02,140] multiqc [DEBUG ] No samples found: quast [2022-08-28 00:10:02,149] multiqc [DEBUG ] No samples found: qorts [2022-08-28 00:10:02,184] multiqc [DEBUG ] No samples found: rna_seqc [2022-08-28 00:10:02,234] multiqc [DEBUG ] No samples found: rsem [2022-08-28 00:10:02,298] multiqc [DEBUG ] No samples found: rseqc [2022-08-28 00:10:02,327] multiqc [DEBUG ] No samples found: busco [2022-08-28 00:10:02,382] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-08-28 00:10:02,423] multiqc [DEBUG ] No samples found: disambiguate [2022-08-28 00:10:02,463] multiqc [DEBUG ] No samples found: supernova [2022-08-28 00:10:02,567] multiqc [DEBUG ] No samples found: deeptools [2022-08-28 00:10:02,602] multiqc [DEBUG ] No samples found: sargasso [2022-08-28 00:10:02,660] multiqc [DEBUG ] No samples found: verifybamid [2022-08-28 00:10:02,692] multiqc [DEBUG ] No samples found: mirtrace [2022-08-28 00:10:02,716] multiqc [DEBUG ] No samples found: happy [2022-08-28 00:10:02,737] multiqc [DEBUG ] No samples found: homer [2022-08-28 00:10:02,762] multiqc [DEBUG ] No samples found: macs2 [2022-08-28 00:10:02,771] multiqc [DEBUG ] No samples found: theta2 [2022-08-28 00:10:02,782] multiqc [DEBUG ] No samples found: snpeff [2022-08-28 00:10:02,848] multiqc [DEBUG ] No samples found: gatk [2022-08-28 00:10:02,856] multiqc [DEBUG ] No samples found: htseq [2022-08-28 00:10:02,893] multiqc [DEBUG ] No samples found: bcftools [2022-08-28 00:10:02,901] multiqc [DEBUG ] No samples found: featureCounts [2022-08-28 00:10:02,911] multiqc [DEBUG ] No samples found: fgbio [2022-08-28 00:10:02,919] multiqc [DEBUG ] No samples found: dedup [2022-08-28 00:10:02,930] multiqc [DEBUG ] No samples found: damageprofiler [2022-08-28 00:10:03,069] multiqc [DEBUG ] No samples found: biobambam2 [2022-08-28 00:10:03,103] multiqc [DEBUG ] No samples found: mtnucratio [2022-08-28 00:10:03,110] multiqc [DEBUG ] No samples found: picard [2022-08-28 00:10:03,137] multiqc [DEBUG ] No samples found: prokka [2022-08-28 00:10:03,147] multiqc [DEBUG ] No samples found: samblaster [2022-08-28 00:10:03,209] multiqc [DEBUG ] No samples found: samtools [2022-08-28 00:10:03,229] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-08-28 00:10:03,259] multiqc [DEBUG ] No samples found: bamtools [2022-08-28 00:10:03,267] multiqc [DEBUG ] No samples found: jellyfish [2022-08-28 00:10:03,280] multiqc [DEBUG ] No samples found: vcftools [2022-08-28 00:10:03,304] multiqc [DEBUG ] No samples found: longranger [2022-08-28 00:10:03,334] multiqc [DEBUG ] No samples found: stacks [2022-08-28 00:10:03,408] multiqc [DEBUG ] No samples found: bbmap [2022-08-28 00:10:03,428] multiqc [DEBUG ] No samples found: bismark [2022-08-28 00:10:03,465] multiqc [DEBUG ] No samples found: biscuit [2022-08-28 00:10:03,496] multiqc [DEBUG ] No samples found: hicexplorer [2022-08-28 00:10:03,514] multiqc [DEBUG ] No samples found: hicup [2022-08-28 00:10:03,538] multiqc [DEBUG ] No samples found: hicpro [2022-08-28 00:10:03,549] multiqc [DEBUG ] No samples found: salmon [2022-08-28 00:10:03,585] multiqc [DEBUG ] No samples found: kallisto [2022-08-28 00:10:03,611] multiqc [DEBUG ] No samples found: slamdunk [2022-08-28 00:10:03,654] multiqc [DEBUG ] No samples found: star [2022-08-28 00:10:03,674] multiqc [DEBUG ] No samples found: hisat2 [2022-08-28 00:10:03,693] multiqc [DEBUG ] No samples found: tophat [2022-08-28 00:10:03,705] multiqc [DEBUG ] No samples found: bowtie2 [2022-08-28 00:10:03,736] multiqc [DEBUG ] No samples found: bowtie1 [2022-08-28 00:10:03,747] multiqc [DEBUG ] No samples found: kat [2022-08-28 00:10:03,757] multiqc [DEBUG ] No samples found: leehom [2022-08-28 00:10:03,787] multiqc [DEBUG ] No samples found: adapterRemoval [2022-08-28 00:10:03,797] multiqc [DEBUG ] No samples found: clipandmerge [2022-08-28 00:10:03,837] multiqc [DEBUG ] No samples found: cutadapt [2022-08-28 00:10:03,849] multiqc [DEBUG ] No samples found: flexbar [2022-08-28 00:10:03,868] multiqc [DEBUG ] No samples found: trimmomatic [2022-08-28 00:10:03,901] multiqc [DEBUG ] No samples found: skewer [2022-08-28 00:10:03,912] multiqc [DEBUG ] No samples found: sortmerna [2022-08-28 00:10:03,935] multiqc [DEBUG ] No samples found: biobloomtools [2022-08-28 00:10:03,968] multiqc [DEBUG ] No samples found: fastq_screen [2022-08-28 00:10:04,019] multiqc [DEBUG ] No samples found: afterqc [2022-08-28 00:10:04,801] multiqc.modules.fastp.fastp [INFO ] Found 32 reports [2022-08-28 00:10:04,943] multiqc [DEBUG ] No samples found: fastqc [2022-08-28 00:10:04,978] multiqc [DEBUG ] No samples found: minionqc [2022-08-28 00:10:05,010] multiqc [DEBUG ] No samples found: mosdepth [2022-08-28 00:10:05,032] multiqc [DEBUG ] No samples found: clusterflow [2022-08-28 00:10:05,063] multiqc [DEBUG ] No samples found: bcl2fastq [2022-08-28 00:10:05,092] multiqc [DEBUG ] No samples found: interop [2022-08-28 00:10:05,104] multiqc [DEBUG ] No samples found: flash [2022-08-28 00:10:05,115] multiqc [DEBUG ] No samples found: seqyclean [2022-08-28 00:10:05,198] multiqc [INFO ] Compressing plot data [2022-08-28 00:10:07,786] multiqc [INFO ] Report : multiqc_report.html [2022-08-28 00:10:07,789] multiqc [INFO ] Data : multiqc_data [2022-08-28 00:10:07,790] multiqc [DEBUG ] Moving data file from '/tmp/tmpwotnh0es/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/samwhite/outputs/20220826-cvir-larvae_zygote-BSseq-fastp_trimming/multiqc_data' [2022-08-28 00:10:07,791] multiqc [DEBUG ] Moving data file from '/tmp/tmpwotnh0es/multiqc_data/multiqc_fastp.txt' to '/gscratch/scrubbed/samwhite/outputs/20220826-cvir-larvae_zygote-BSseq-fastp_trimming/multiqc_data' [2022-08-28 00:10:07,793] multiqc [DEBUG ] Moving data file from '/tmp/tmpwotnh0es/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/samwhite/outputs/20220826-cvir-larvae_zygote-BSseq-fastp_trimming/multiqc_data' [2022-08-28 00:10:07,793] multiqc [DEBUG ] Moving data file from '/tmp/tmpwotnh0es/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/samwhite/outputs/20220826-cvir-larvae_zygote-BSseq-fastp_trimming/multiqc_data' [2022-08-28 00:10:07,794] multiqc [DEBUG ] Moving data file from '/tmp/tmpwotnh0es/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/samwhite/outputs/20220826-cvir-larvae_zygote-BSseq-fastp_trimming/multiqc_data' [2022-08-28 00:10:08,479] multiqc [INFO ] MultiQC complete