[2022-08-11 11:15:41,671] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2022-08-11 11:15:41,674] multiqc [DEBUG ] Loading config settings from: /usr/lusers/samwhite/.multiqc_config.yaml [2022-08-11 11:15:41,674] multiqc [DEBUG ] New config 'star': {'fn': '*Log.final.out'} [2022-08-11 11:15:41,674] multiqc [DEBUG ] New config 'star/genecounts': {'fn': '*ReadsPerGene.out.tab'} [2022-08-11 11:15:41,674] multiqc [DEBUG ] Added to filename patterns: {'fastp': {'fn': '*report.json'}} [2022-08-11 11:15:41,674] multiqc [DEBUG ] New config 'hisat2': {'contents': 'HISAT2 summary stats:', 'shared': True} [2022-08-11 11:15:41,674] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-08-11 11:15:41,674] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2022-08-11 11:15:42,436] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-08-11 11:15:42,437] multiqc [INFO ] This is MultiQC v1.8 [2022-08-11 11:15:42,437] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2022-08-11 11:15:42,437] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/samwhite/outputs/20220810-snam-hisat2-GCF_016432855.1_index-align-stringtie_isoforms [2022-08-11 11:15:42,437] multiqc [INFO ] Template : default [2022-08-11 11:15:42,438] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2022-08-11 11:15:42,438] multiqc [INFO ] Searching : /gscratch/scrubbed/samwhite/outputs/20220810-snam-hisat2-GCF_016432855.1_index-align-stringtie_isoforms [2022-08-11 11:15:42,439] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2022-08-11 11:15:42,439] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp7lfpsrtx [2022-08-11 11:15:42,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL59.SRR3321208-SRR3321235-SRR3321261.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL46.SRR3321223-SRR3321220-SRR3321247.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: checksums.md5 [2022-08-11 11:15:42,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL55.SRR3321207-SRR3321233-SRR3321260.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL29.SRR3321270-SRR3321226-SRR3321252.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL24.SRR3321267-SRR3321225-SRR3321251.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL58.SRR3321203-SRR3321229-SRR3321255.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: gtf_list.txt [2022-08-11 11:15:42,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL15.SRR3321256-SRR3321224-SRR3321250.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 20220810-snam-stringtie-GCF_016432855.1-sorted_bams-merged.bam [2022-08-11 11:15:42,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL34.SRR3321201-SRR3321218-SRR3321244.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 20220810-snam-hisat2-GCF_016432855.1_index-align-stringtie_isoforms.sh [2022-08-11 11:15:42,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 20220810-snam-hisat2-GCF_016432855.1_index-align-stringtie_isoforms.sh [2022-08-11 11:15:42,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: snam-GCF_016432855.1.3.ht2 [2022-08-11 11:15:42,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: snam-GCF_016432855.1.3.ht2 [2022-08-11 11:15:42,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: program_options.log [2022-08-11 11:15:42,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: program_options.log [2022-08-11 11:15:42,695] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL32.SRR3321200-SRR3321217-SRR3321243.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,695] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL36.SRR3321271-SRR3321227-SRR3321253.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: snam-GCF_016432855.1.8.ht2 [2022-08-11 11:15:42,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: snam-GCF_016432855.1.8.ht2 [2022-08-11 11:15:42,700] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: snam-GCF_016432855.1.8.ht2 [2022-08-11 11:15:42,700] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: snam-GCF_016432855.1.8.ht2 [2022-08-11 11:15:42,700] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: snam-GCF_016432855.1.8.ht2 [2022-08-11 11:15:42,700] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: snam-GCF_016432855.1.8.ht2 [2022-08-11 11:15:42,700] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: snam-GCF_016432855.1.8.ht2 [2022-08-11 11:15:42,704] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL44.SRR3321212-SRR3321219-SRR3321246.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,704] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL56.SRR3321234-SRR3321221-SRR3321248.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 20220810-snam-stringtie-GCF_016432855.1-sorted_bams-merged.bam.bai [2022-08-11 11:15:42,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: snam-GCF_016432855.1.stringtie.gtf [2022-08-11 11:15:42,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: hisat2_build.err [2022-08-11 11:15:42,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: hisat2_build.err [2022-08-11 11:15:42,735] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL43.SRR3321206-SRR3321232-SRR3321259.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL20.SRR3321204-SRR3321230-SRR3321257.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL35.SRR3321213-SRR3321239-SRR3321265.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL63.SRR3321216-SRR3321242-SRR3321269.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL62.SRR3321209-SRR3321236-SRR3321262.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: original-fastq-checksums.md5 [2022-08-11 11:15:42,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SraRunTable.txt [2022-08-11 11:15:42,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SraRunTable.txt [2022-08-11 11:15:42,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-3459606.out [2022-08-11 11:15:42,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-3459606.out [2022-08-11 11:15:42,768] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL61.SRR3321245-SRR3321222-SRR3321249.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL50.SRR3321202-SRR3321228-SRR3321254.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: concatenated-fastq-checksums.md5 [2022-08-11 11:15:42,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL31.SRR3321205-SRR3321231-SRR3321258.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL53.SRR3321215-SRR3321241-SRR3321268.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL49.SRR3321214-SRR3321240-SRR3321266.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL13.SRR3321210-SRR3321237-SRR3321263.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL16.SRR3321211-SRR3321238-SRR3321264.fastq.trimmed.20220707.fq.gz [2022-08-11 11:15:42,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL44.sorted.bam.bai [2022-08-11 11:15:42,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL44.cov_refs.gtf [2022-08-11 11:15:43,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:15:43,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:15:43,010] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:15:43,010] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:15:43,010] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:15:43,010] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:15:43,010] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:15:43,010] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:15:54,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL44-checksums.md5 [2022-08-11 11:15:54,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:15:54,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:15:54,690] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:15:54,690] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:15:54,690] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:15:54,690] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:15:54,691] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:15:54,691] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:15:56,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL44.sorted.bam [2022-08-11 11:15:56,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL44.gtf [2022-08-11 11:15:57,087] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:15:57,088] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:15:57,088] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:15:57,088] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:15:57,088] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:15:57,088] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:15:57,088] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:15:57,088] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:10,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL16.gtf [2022-08-11 11:16:10,239] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:10,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:10,240] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:10,240] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:10,240] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:10,240] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:10,240] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:10,240] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:21,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL16.sorted.bam [2022-08-11 11:16:21,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:21,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:21,904] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:21,904] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:21,904] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:21,904] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:21,904] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:21,904] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:24,032] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL16.cov_refs.gtf [2022-08-11 11:16:24,032] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL16-checksums.md5 [2022-08-11 11:16:24,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:24,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:24,253] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:24,253] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:24,253] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:24,253] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:24,253] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:24,253] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:37,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL16.sorted.bam.bai [2022-08-11 11:16:37,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL55-checksums.md5 [2022-08-11 11:16:37,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL55.gtf [2022-08-11 11:16:37,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL55.sorted.bam.bai [2022-08-11 11:16:37,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:37,400] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:37,400] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:37,400] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:37,400] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:37,401] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:37,401] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:37,401] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:16:49,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:49,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:49,062] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:49,062] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:49,062] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:49,062] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:49,062] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:49,062] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:16:51,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL55.cov_refs.gtf [2022-08-11 11:16:51,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL55.sorted.bam [2022-08-11 11:16:51,414] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:51,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:51,415] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:51,415] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:51,415] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:51,415] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:51,416] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:16:51,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:04,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL43-checksums.md5 [2022-08-11 11:17:04,562] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:04,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:04,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:04,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:04,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:04,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:04,563] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:04,563] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:16,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL43.gtf [2022-08-11 11:17:16,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:16,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:16,224] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:16,224] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:16,224] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:16,224] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:16,224] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:16,224] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:18,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL43.sorted.bam.bai [2022-08-11 11:17:18,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL43.sorted.bam [2022-08-11 11:17:18,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL43.cov_refs.gtf [2022-08-11 11:17:18,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:18,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:18,569] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:18,569] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:18,569] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:18,569] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:18,569] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:18,569] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:31,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL63.cov_refs.gtf [2022-08-11 11:17:31,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL63.sorted.bam.bai [2022-08-11 11:17:31,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL63.sorted.bam [2022-08-11 11:17:31,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:31,730] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:31,730] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:31,730] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:31,730] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:31,730] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:31,730] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:31,730] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:43,392] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:43,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:43,393] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:43,393] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:43,393] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:43,393] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:43,393] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:43,393] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:17:45,734] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:45,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:45,735] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:45,735] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:45,735] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:45,735] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:45,735] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:45,735] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:17:58,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL63-checksums.md5 [2022-08-11 11:17:58,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL63.gtf [2022-08-11 11:17:58,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL13.sorted.bam [2022-08-11 11:17:58,694] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL13.sorted.bam.bai [2022-08-11 11:17:58,694] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL13.gtf [2022-08-11 11:17:58,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:58,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:58,899] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:58,899] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:58,899] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:58,899] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:58,899] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:17:58,899] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:10,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:10,986] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:10,987] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:10,987] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:10,987] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:10,987] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:10,987] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:10,987] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:13,150] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL13.cov_refs.gtf [2022-08-11 11:18:13,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL13-checksums.md5 [2022-08-11 11:18:13,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:13,386] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:13,386] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:13,386] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:13,386] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:13,386] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:13,386] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:13,386] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:26,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL62.sorted.bam [2022-08-11 11:18:27,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:27,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:27,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:27,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:27,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:27,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:27,015] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:27,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:38,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:38,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:38,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:38,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:38,673] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:38,673] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:38,673] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:38,673] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:18:40,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL62.cov_refs.gtf [2022-08-11 11:18:40,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL62.gtf [2022-08-11 11:18:40,803] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL62.sorted.bam.bai [2022-08-11 11:18:41,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:41,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:41,031] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:41,031] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:41,031] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:41,031] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:41,031] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:41,031] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:18:54,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL62-checksums.md5 [2022-08-11 11:18:54,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL20.gtf [2022-08-11 11:18:54,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:54,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:54,651] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:54,651] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:54,651] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:54,651] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:54,651] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:18:54,651] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:06,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:06,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:06,717] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:06,717] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:06,717] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:06,717] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:06,717] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:06,717] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:08,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL20.sorted.bam [2022-08-11 11:19:08,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL20-checksums.md5 [2022-08-11 11:19:08,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL20.sorted.bam.bai [2022-08-11 11:19:09,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:09,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:09,103] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:09,103] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:09,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:09,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:09,103] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:09,103] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:22,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL20.cov_refs.gtf [2022-08-11 11:19:22,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL61-checksums.md5 [2022-08-11 11:19:22,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL61.sorted.bam.bai [2022-08-11 11:19:22,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:22,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:22,260] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:22,260] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:22,260] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:22,260] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:22,260] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:22,260] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:34,333] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:34,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:34,334] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:34,334] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:34,334] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:34,334] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:34,334] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:34,334] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:19:36,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL61.cov_refs.gtf [2022-08-11 11:19:36,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL61.gtf [2022-08-11 11:19:36,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:36,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:36,716] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:36,716] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:36,716] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:36,716] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:36,717] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:36,717] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:19:50,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL61.sorted.bam [2022-08-11 11:19:50,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:50,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:50,331] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:50,332] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:50,332] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:50,332] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:50,332] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:19:50,332] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:01,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:01,983] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:01,983] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:01,983] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:01,983] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:01,983] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:01,983] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:01,983] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:04,098] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL58.gtf [2022-08-11 11:20:04,105] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL58-checksums.md5 [2022-08-11 11:20:04,106] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL58.cov_refs.gtf [2022-08-11 11:20:04,106] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL58.sorted.bam.bai [2022-08-11 11:20:04,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:04,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:04,326] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:04,326] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:04,327] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:04,327] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:04,327] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:04,327] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:17,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL58.sorted.bam [2022-08-11 11:20:17,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL31.sorted.bam [2022-08-11 11:20:17,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL31.cov_refs.gtf [2022-08-11 11:20:17,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL31-checksums.md5 [2022-08-11 11:20:17,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:17,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:17,474] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:17,474] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:17,474] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:17,474] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:17,474] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:17,474] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:29,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:29,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:29,133] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:29,133] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:29,133] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:29,133] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:29,133] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:29,133] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:31,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:31,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:31,468] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:31,468] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:31,468] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:31,468] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:31,468] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:31,468] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:44,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL31.sorted.bam.bai [2022-08-11 11:20:44,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL31.gtf [2022-08-11 11:20:44,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL15.gtf [2022-08-11 11:20:44,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL15.sorted.bam [2022-08-11 11:20:44,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:44,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:44,613] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:44,613] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:44,613] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:44,614] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:44,614] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:44,614] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:20:56,260] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:56,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:56,262] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:56,262] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:56,262] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:56,262] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:56,262] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:56,262] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:20:58,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL15.sorted.bam.bai [2022-08-11 11:20:58,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:58,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:58,608] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:58,608] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:58,608] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:58,608] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:58,608] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:20:58,608] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:12,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL15-checksums.md5 [2022-08-11 11:21:12,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL15.cov_refs.gtf [2022-08-11 11:21:12,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL32.sorted.bam.bai [2022-08-11 11:21:12,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL32-checksums.md5 [2022-08-11 11:21:12,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:12,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:12,227] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:12,227] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:12,227] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:12,227] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:12,227] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:12,227] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:24,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:24,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:24,302] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:24,302] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:24,302] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:24,302] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:24,302] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:24,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:26,462] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL32.cov_refs.gtf [2022-08-11 11:21:26,463] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL32.gtf [2022-08-11 11:21:26,463] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL32.sorted.bam [2022-08-11 11:21:26,683] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:26,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:26,684] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:26,684] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:26,684] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:26,684] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:26,684] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:26,684] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:39,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL29.sorted.bam.bai [2022-08-11 11:21:39,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL29.cov_refs.gtf [2022-08-11 11:21:39,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:39,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:39,825] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:39,825] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:39,825] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:39,825] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:39,825] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:39,825] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:21:51,476] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:51,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:51,477] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:51,477] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:51,477] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:51,477] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:51,477] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:51,477] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:21:53,593] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL29-checksums.md5 [2022-08-11 11:21:53,600] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL29.gtf [2022-08-11 11:21:53,600] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL29.sorted.bam [2022-08-11 11:21:53,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:53,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:53,828] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:53,828] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:53,828] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:53,828] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:53,828] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:21:53,828] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:07,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL24.sorted.bam [2022-08-11 11:22:07,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL24-checksums.md5 [2022-08-11 11:22:07,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:07,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:07,435] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:07,435] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:07,435] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:07,435] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:07,435] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:07,435] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:19,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:19,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:19,513] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:19,513] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:19,513] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:19,513] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:19,513] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:19,513] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:21,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL24.cov_refs.gtf [2022-08-11 11:22:21,896] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:21,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:21,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:21,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:21,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:21,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:21,897] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:21,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:34,834] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL24.sorted.bam.bai [2022-08-11 11:22:34,834] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL24.gtf [2022-08-11 11:22:34,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL53.sorted.bam [2022-08-11 11:22:35,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:35,047] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:35,047] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:35,047] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:35,047] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:35,047] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:35,047] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:35,047] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:22:47,300] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:47,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:47,302] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:47,302] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:47,303] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:47,303] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:47,303] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:47,303] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:22:49,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL53.sorted.bam.bai [2022-08-11 11:22:49,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL53.cov_refs.gtf [2022-08-11 11:22:49,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL53.gtf [2022-08-11 11:22:49,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL53-checksums.md5 [2022-08-11 11:22:49,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:49,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:49,896] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:49,896] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:49,896] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:49,896] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:49,896] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:22:49,896] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:03,337] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL35.sorted.bam.bai [2022-08-11 11:23:03,337] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL35.cov_refs.gtf [2022-08-11 11:23:03,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:03,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:03,637] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:03,637] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:03,637] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:03,637] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:03,637] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:03,637] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:15,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:15,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:15,791] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:15,791] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:15,791] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:15,791] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:15,791] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:15,791] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:17,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL35.gtf [2022-08-11 11:23:17,966] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL35.sorted.bam [2022-08-11 11:23:18,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:18,323] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:18,323] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:18,323] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:18,323] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:18,323] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:18,323] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:18,323] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:31,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL35-checksums.md5 [2022-08-11 11:23:31,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL49.cov_refs.gtf [2022-08-11 11:23:31,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL49.sorted.bam [2022-08-11 11:23:31,744] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL49.sorted.bam.bai [2022-08-11 11:23:32,162] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:32,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:32,163] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:32,163] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:32,163] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:32,163] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:32,163] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:32,163] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:23:44,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL49-checksums.md5 [2022-08-11 11:23:44,306] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:44,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:44,308] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:44,308] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:44,308] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:44,308] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:44,308] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:44,308] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:23:46,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSL49.gtf [2022-08-11 11:23:46,801] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:46,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:46,803] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:46,803] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:46,803] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:46,804] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:46,804] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:23:46,804] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:00,232] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL46.sorted.bam [2022-08-11 11:24:00,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:00,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:00,552] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:00,552] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:00,552] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:00,552] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:00,552] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:00,552] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:12,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL46.gtf [2022-08-11 11:24:12,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL46.sorted.bam.bai [2022-08-11 11:24:12,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:12,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:12,273] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:12,273] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:12,273] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:12,273] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:12,273] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:12,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:14,392] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL46-checksums.md5 [2022-08-11 11:24:14,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL46.cov_refs.gtf [2022-08-11 11:24:14,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:14,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:14,714] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:14,714] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:14,714] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:14,714] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:14,714] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:14,714] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:27,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL59.sorted.bam [2022-08-11 11:24:27,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL59-checksums.md5 [2022-08-11 11:24:27,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:27,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:27,959] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:27,959] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:27,960] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:27,960] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:27,960] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:27,960] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:39,704] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:39,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:39,706] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:39,706] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:39,706] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:39,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:39,706] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:39,706] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:24:41,843] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL59.cov_refs.gtf [2022-08-11 11:24:41,843] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL59.gtf [2022-08-11 11:24:42,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:42,219] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:42,219] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:42,219] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:42,219] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:42,219] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:42,219] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:42,219] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:24:55,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PLL59.sorted.bam.bai [2022-08-11 11:24:55,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:55,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:55,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:55,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:55,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:55,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:55,426] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:24:55,426] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:07,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:07,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:07,154] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:07,154] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:07,154] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:07,155] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:07,155] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:07,155] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:09,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL50.sorted.bam.bai [2022-08-11 11:25:09,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL50.sorted.bam [2022-08-11 11:25:09,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL50.gtf [2022-08-11 11:25:09,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL50-checksums.md5 [2022-08-11 11:25:09,648] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:09,649] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:09,649] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:09,649] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:09,649] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:09,649] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:09,649] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:09,649] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:22,592] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL50.cov_refs.gtf [2022-08-11 11:25:22,593] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL56.cov_refs.gtf [2022-08-11 11:25:22,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL56.sorted.bam.bai [2022-08-11 11:25:22,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL56.sorted.bam [2022-08-11 11:25:22,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:22,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:22,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:22,888] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:22,888] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:22,888] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:22,888] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:22,888] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:34,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:34,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:34,714] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:34,714] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:34,714] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:34,714] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:34,714] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:34,714] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:25:36,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL56-checksums.md5 [2022-08-11 11:25:36,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL56.gtf [2022-08-11 11:25:37,145] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:37,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:37,147] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:37,147] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:37,147] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:37,147] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:37,147] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:37,147] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:25:50,454] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:50,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:50,455] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:50,455] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:50,455] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:50,455] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:50,455] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:25:50,455] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:26:02,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL36.sorted.bam.bai [2022-08-11 11:26:02,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:02,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:02,196] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:02,196] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:02,196] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:02,196] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:02,196] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:02,196] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:04,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL36.sorted.bam [2022-08-11 11:26:04,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL36-checksums.md5 [2022-08-11 11:26:04,327] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL36.cov_refs.gtf [2022-08-11 11:26:04,328] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPSL36.gtf [2022-08-11 11:26:04,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:04,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:04,677] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:04,677] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:04,677] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:04,677] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:04,677] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:04,677] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:17,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL34.sorted.bam.bai [2022-08-11 11:26:17,944] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:26:17,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:26:17,945] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:26:17,945] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:26:17,945] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:26:17,945] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:26:17,945] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:26:17,945] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: i2t.ctab [2022-08-11 11:26:29,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:29,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:29,750] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:29,750] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:29,750] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:29,750] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:29,750] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:29,750] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: t_data.ctab [2022-08-11 11:26:31,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL34.sorted.bam [2022-08-11 11:26:31,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL34.gtf [2022-08-11 11:26:31,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL34-checksums.md5 [2022-08-11 11:26:32,413] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:32,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:32,415] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:32,415] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:32,415] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:32,415] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:32,416] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:32,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: e2t.ctab [2022-08-11 11:26:45,501] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: NPLL34.cov_refs.gtf [2022-08-11 11:26:48,940] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2022-08-11 11:26:48,974] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2022-08-11 11:26:48,996] multiqc [DEBUG ] No samples found: custom_content [2022-08-11 11:26:49,072] multiqc [DEBUG ] No samples found: conpair [2022-08-11 11:26:49,173] multiqc [DEBUG ] No samples found: peddy [2022-08-11 11:26:49,261] multiqc [DEBUG ] No samples found: methylQA [2022-08-11 11:26:49,278] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-08-11 11:26:49,411] multiqc [DEBUG ] No samples found: qualimap [2022-08-11 11:26:49,479] multiqc [DEBUG ] No samples found: preseq [2022-08-11 11:26:49,520] multiqc [DEBUG ] No samples found: quast [2022-08-11 11:26:49,547] multiqc [DEBUG ] No samples found: qorts [2022-08-11 11:26:49,590] multiqc [DEBUG ] No samples found: rna_seqc [2022-08-11 11:26:49,628] multiqc [DEBUG ] No samples found: rsem [2022-08-11 11:26:49,713] multiqc [DEBUG ] No samples found: rseqc [2022-08-11 11:26:49,727] multiqc [DEBUG ] No samples found: busco [2022-08-11 11:26:49,766] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-08-11 11:26:49,787] multiqc [DEBUG ] No samples found: disambiguate [2022-08-11 11:26:49,813] multiqc [DEBUG ] No samples found: supernova [2022-08-11 11:26:49,999] multiqc [DEBUG ] No samples found: deeptools [2022-08-11 11:26:50,057] multiqc [DEBUG ] No samples found: sargasso [2022-08-11 11:26:50,111] multiqc [DEBUG ] No samples found: verifybamid [2022-08-11 11:26:50,143] multiqc [DEBUG ] No samples found: mirtrace [2022-08-11 11:26:50,205] multiqc [DEBUG ] No samples found: happy [2022-08-11 11:26:50,255] multiqc [DEBUG ] No samples found: homer [2022-08-11 11:26:50,284] multiqc [DEBUG ] No samples found: macs2 [2022-08-11 11:26:50,308] multiqc [DEBUG ] No samples found: theta2 [2022-08-11 11:26:50,363] multiqc [DEBUG ] No samples found: snpeff [2022-08-11 11:26:50,416] multiqc [DEBUG ] No samples found: gatk [2022-08-11 11:26:50,439] multiqc [DEBUG ] No samples found: htseq [2022-08-11 11:26:50,489] multiqc [DEBUG ] No samples found: bcftools [2022-08-11 11:26:50,523] multiqc [DEBUG ] No samples found: featureCounts [2022-08-11 11:26:50,549] multiqc [DEBUG ] No samples found: fgbio [2022-08-11 11:26:50,588] multiqc [DEBUG ] No samples found: dedup [2022-08-11 11:26:50,623] multiqc [DEBUG ] No samples found: damageprofiler [2022-08-11 11:26:50,816] multiqc [DEBUG ] No samples found: biobambam2 [2022-08-11 11:26:50,875] multiqc [DEBUG ] No samples found: mtnucratio [2022-08-11 11:26:50,882] multiqc [DEBUG ] No samples found: picard [2022-08-11 11:26:50,901] multiqc [DEBUG ] No samples found: prokka [2022-08-11 11:26:50,921] multiqc [DEBUG ] No samples found: samblaster [2022-08-11 11:26:51,076] multiqc [DEBUG ] No samples found: samtools [2022-08-11 11:26:51,124] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-08-11 11:26:51,190] multiqc [DEBUG ] No samples found: bamtools [2022-08-11 11:26:51,202] multiqc [DEBUG ] No samples found: jellyfish [2022-08-11 11:26:51,219] multiqc [DEBUG ] No samples found: vcftools [2022-08-11 11:26:51,260] multiqc [DEBUG ] No samples found: longranger [2022-08-11 11:26:51,306] multiqc [DEBUG ] No samples found: stacks [2022-08-11 11:26:51,377] multiqc [DEBUG ] No samples found: bbmap [2022-08-11 11:26:51,424] multiqc [DEBUG ] No samples found: bismark [2022-08-11 11:26:51,445] multiqc [DEBUG ] No samples found: biscuit [2022-08-11 11:26:51,468] multiqc [DEBUG ] No samples found: hicexplorer [2022-08-11 11:26:51,502] multiqc [DEBUG ] No samples found: hicup [2022-08-11 11:26:51,522] multiqc [DEBUG ] No samples found: hicpro [2022-08-11 11:26:51,531] multiqc [DEBUG ] No samples found: salmon [2022-08-11 11:26:51,552] multiqc [DEBUG ] No samples found: kallisto [2022-08-11 11:26:51,581] multiqc [DEBUG ] No samples found: slamdunk [2022-08-11 11:26:51,603] multiqc [DEBUG ] No samples found: star [2022-08-11 11:26:51,620] multiqc [DEBUG ] No samples found: hisat2 [2022-08-11 11:26:51,645] multiqc [DEBUG ] No samples found: tophat [2022-08-11 11:26:51,693] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 24 reports [2022-08-11 11:26:51,732] multiqc [DEBUG ] No samples found: bowtie1 [2022-08-11 11:26:51,744] multiqc [DEBUG ] No samples found: kat [2022-08-11 11:26:51,751] multiqc [DEBUG ] No samples found: leehom [2022-08-11 11:26:51,772] multiqc [DEBUG ] No samples found: adapterRemoval [2022-08-11 11:26:51,780] multiqc [DEBUG ] No samples found: clipandmerge [2022-08-11 11:26:51,797] multiqc [DEBUG ] No samples found: cutadapt [2022-08-11 11:26:51,806] multiqc [DEBUG ] No samples found: flexbar [2022-08-11 11:26:51,840] multiqc [DEBUG ] No samples found: trimmomatic [2022-08-11 11:26:51,874] multiqc [DEBUG ] No samples found: skewer [2022-08-11 11:26:51,886] multiqc [DEBUG ] No samples found: sortmerna [2022-08-11 11:26:51,898] multiqc [DEBUG ] No samples found: biobloomtools [2022-08-11 11:26:51,931] multiqc [DEBUG ] No samples found: fastq_screen [2022-08-11 11:26:51,982] multiqc [DEBUG ] No samples found: afterqc [2022-08-11 11:26:52,007] multiqc [DEBUG ] No samples found: fastp [2022-08-11 11:26:52,032] multiqc [DEBUG ] No samples found: fastqc [2022-08-11 11:26:52,073] multiqc [DEBUG ] No samples found: minionqc [2022-08-11 11:26:52,098] multiqc [DEBUG ] No samples found: mosdepth [2022-08-11 11:26:52,128] multiqc [DEBUG ] No samples found: clusterflow [2022-08-11 11:26:52,151] multiqc [DEBUG ] No samples found: bcl2fastq [2022-08-11 11:26:52,162] multiqc [DEBUG ] No samples found: interop [2022-08-11 11:26:52,188] multiqc [DEBUG ] No samples found: flash [2022-08-11 11:26:52,211] multiqc [DEBUG ] No samples found: seqyclean [2022-08-11 11:26:52,222] multiqc [INFO ] Compressing plot data [2022-08-11 11:26:52,230] multiqc [INFO ] Report : multiqc_report.html [2022-08-11 11:26:52,230] multiqc [INFO ] Data : multiqc_data [2022-08-11 11:26:52,280] multiqc [DEBUG ] Moving data file from '/tmp/tmp7lfpsrtx/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/samwhite/outputs/20220810-snam-hisat2-GCF_016432855.1_index-align-stringtie_isoforms/multiqc_data' [2022-08-11 11:26:52,282] multiqc [DEBUG ] Moving data file from '/tmp/tmp7lfpsrtx/multiqc_data/multiqc_bowtie2.txt' to '/gscratch/scrubbed/samwhite/outputs/20220810-snam-hisat2-GCF_016432855.1_index-align-stringtie_isoforms/multiqc_data' [2022-08-11 11:26:52,283] multiqc [DEBUG ] Moving data file from '/tmp/tmp7lfpsrtx/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/samwhite/outputs/20220810-snam-hisat2-GCF_016432855.1_index-align-stringtie_isoforms/multiqc_data' [2022-08-11 11:26:52,285] multiqc [DEBUG ] Moving data file from '/tmp/tmp7lfpsrtx/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/samwhite/outputs/20220810-snam-hisat2-GCF_016432855.1_index-align-stringtie_isoforms/multiqc_data' [2022-08-11 11:26:52,286] multiqc [DEBUG ] Moving data file from '/tmp/tmp7lfpsrtx/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/samwhite/outputs/20220810-snam-hisat2-GCF_016432855.1_index-align-stringtie_isoforms/multiqc_data' [2022-08-11 11:26:53,201] multiqc [INFO ] MultiQC complete