nextflow run /home/shared/epidiverse-pipelines/wgbs-current/ --input /home/shared/8TB_HDD_01/sam/data/O_lurida/BSseq/ --reference /home/shared/8TB_HDD_01/sam/data/O_lurida/genomes/Olurida_v081-mergecat98.fa --INDEX --trim --clip5 10 --fastqc --noLambda --SE --kepBams
62309191e1738f31b58dccecd4d80149
873d3d9c-f0f3-4395-be79-67de0f703fae
These plots give an overview of the distribution of resource usage for each process.
This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.
task_id | process | tag | status | hash | allocated cpus | %cpu | allocated memory | %mem | vmem | rss | peak_vmem | peak_rss | allocated time | duration | realtime | script | exit | submit | start | complete | rchar | wchar | syscr | syscw | read_bytes | write_bytes | native_id | name | module | container | disk | attempt | scratch | workdir |
---|
task_id | process | tag | status | hash | allocated cpus | %cpu | allocated memory | %mem | vmem | rss | peak_vmem | peak_rss | allocated time | duration | realtime | script | exit | submit | start | complete | rchar | wchar | syscr | syscw | read_bytes | write_bytes | native_id | name | module | container | disk | attempt | scratch | workdir |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | INDEX:erne_bs5_indexing | - | COMPLETED | d9/5ee6de | 2 | 100.1 | 2.000 GB | 2.0 | 5.742 GB | 4.955 GB | 6.170 GB | 5.011 GB | 8h 0m | 52m 59s | 52m 59s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:40:37+00:00 | 1.165 GB | 1.330 GB | 149.285 kB | 246.351 kB | 652.000 kB | 1.330 GB | 33744 | INDEX:erne_bs5_indexing | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/d9/5ee6ded0cb60bffc56f23c7191148c |
3 | WGBS:read_trimming | zr1394_17_s456 | COMPLETED | 89/1f5d28 | 1 | 101.8 | 2.000 GB | 0.0 | 214.227 MB | 26.230 MB | 342.227 MB | 26.230 MB | 8h 0m | 18m 1s | 18m 1s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:05:40+00:00 | 7.802 GB | 7.574 GB | 243.541 kB | 243.820 kB | 1.361 GB | 1.135 GB | 34536 | WGBS:read_trimming (zr1394_17_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/89/1f5d2822e93b5f6cb845f5b7a5ccbd |
4 | WGBS:read_trimming | zr1394_12_s456 | COMPLETED | 17/f70456 | 1 | 102.1 | 2.000 GB | 0.0 | 215.164 MB | 27.516 MB | 343.164 MB | 27.516 MB | 8h 0m | 24m 33s | 24m 33s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:12:12+00:00 | 10.969 GB | 10.663 GB | 342.236 kB | 343.042 kB | 1.888 GB | 1.584 GB | 34406 | WGBS:read_trimming (zr1394_12_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/17/f7045660a96da59c960db0910fbaba |
5 | WGBS:read_trimming | zr1394_6_s456 | COMPLETED | 2e/cd5940 | 1 | 101.7 | 2.000 GB | 0.0 | 214.539 MB | 26.398 MB | 342.539 MB | 26.398 MB | 8h 0m | 19m 37s | 19m 37s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:07:15+00:00 | 8.566 GB | 8.334 GB | 267.341 kB | 268.234 kB | 1.474 GB | 1.244 GB | 33877 | WGBS:read_trimming (zr1394_6_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/2e/cd59406c1728c42c569caabe2f8f1d |
6 | WGBS:read_trimming | zr1394_15_s456 | COMPLETED | de/33573e | 1 | 102.3 | 2.000 GB | 0.0 | 215.918 MB | 28.262 MB | 343.918 MB | 28.262 MB | 8h 0m | 27m 41s | 27m 41s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:15:20+00:00 | 12.558 GB | 12.203 GB | 391.765 kB | 392.462 kB | 2.170 GB | 1.817 GB | 34481 | WGBS:read_trimming (zr1394_15_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/de/33573ebd111f9f8661bd8818953e91 |
7 | WGBS:read_trimming | zr1394_8_s456 | COMPLETED | c7/4771ad | 1 | 101.7 | 2.000 GB | 0.0 | 213.758 MB | 25.809 MB | 341.758 MB | 25.809 MB | 8h 0m | 16m 32s | 16m 32s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:04:10+00:00 | 7.144 GB | 6.947 GB | 223.035 kB | 223.648 kB | 1.235 GB | 1.039 GB | 33853 | WGBS:read_trimming (zr1394_8_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/c7/4771adc2a93f351859789c304fb1b9 |
8 | WGBS:read_trimming | zr1394_2_s456 | COMPLETED | cc/f9329e | 1 | 101.7 | 2.000 GB | 0.0 | 214.383 MB | 26.676 MB | 342.383 MB | 26.676 MB | 8h 0m | 19m 33s | 19m 33s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:07:12+00:00 | 8.513 GB | 8.277 GB | 265.688 kB | 266.405 kB | 1.469 GB | 1.235 GB | 33827 | WGBS:read_trimming (zr1394_2_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/cc/f9329e9433e9024749fc2adcab8367 |
9 | WGBS:read_trimming | zr1394_10_s456 | COMPLETED | dd/301e70 | 1 | 102.5 | 2.000 GB | 0.0 | 217.324 MB | 29.543 MB | 345.324 MB | 29.543 MB | 8h 0m | 31m 36s | 31m 36s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:19:15+00:00 | 14.453 GB | 14.041 GB | 450.859 kB | 451.372 kB | 2.502 GB | 2.091 GB | 33936 | WGBS:read_trimming (zr1394_10_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/dd/301e701c8193a09756acd7acba0440 |
10 | WGBS:read_trimming | zr1394_4_s456 | COMPLETED | 22/104028 | 1 | 101.8 | 2.000 GB | 0.0 | 214.695 MB | 26.895 MB | 342.695 MB | 26.895 MB | 8h 0m | 19m 0s | 19m 0s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:06:38+00:00 | 8.288 GB | 8.060 GB | 258.686 kB | 259.375 kB | 1.432 GB | 1.205 GB | 34286 | WGBS:read_trimming (zr1394_4_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/22/1040283d8d30c2b3e23a0955ad7f12 |
11 | WGBS:read_trimming | zr1394_5_s456 | COMPLETED | 03/58088f | 1 | 101.7 | 2.000 GB | 0.0 | 214.852 MB | 27.121 MB | 342.852 MB | 27.121 MB | 8h 0m | 19m 56s | 19m 56s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:07:35+00:00 | 8.758 GB | 8.512 GB | 273.313 kB | 273.906 kB | 1.507 GB | 1.263 GB | 34325 | WGBS:read_trimming (zr1394_5_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/03/58088f113741c0e0d666764f056898 |
12 | WGBS:read_trimming | zr1394_16_s456 | COMPLETED | bb/9f2344 | 1 | 102.4 | 2.000 GB | 0.0 | 216.230 MB | 28.551 MB | 344.230 MB | 28.551 MB | 8h 0m | 30m 19s | 30m 19s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:17:58+00:00 | 13.770 GB | 13.381 GB | 429.579 kB | 430.318 kB | 2.386 GB | 1.998 GB | 34226 | WGBS:read_trimming (zr1394_16_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/bb/9f234445ff160b4e9fe5404ae006e5 |
13 | WGBS:read_trimming | zr1394_14_s456 | COMPLETED | a0/336d6e | 1 | 102.6 | 2.000 GB | 0.0 | 217.168 MB | 29.391 MB | 345.168 MB | 29.391 MB | 8h 0m | 34m 20s | 34m 20s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:21:59+00:00 | 16.190 GB | 15.742 GB | 504.988 kB | 506.074 kB | 2.786 GB | 2.340 GB | 34159 | WGBS:read_trimming (zr1394_14_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/a0/336d6eeb1e16750c8dd5d1d7a0b02a |
14 | WGBS:read_trimming | zr1394_3_s456 | COMPLETED | 83/84cf4e | 1 | 101.7 | 2.000 GB | 0.0 | 215.477 MB | 27.754 MB | 343.477 MB | 27.754 MB | 8h 0m | 20m 28s | 20m 27s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:08:06+00:00 | 8.928 GB | 8.682 GB | 278.633 kB | 279.319 kB | 1.540 GB | 1.296 GB | 34099 | WGBS:read_trimming (zr1394_3_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/83/84cf4e63c0da0c1c61779709e73e93 |
15 | WGBS:read_trimming | zr1394_7_s456 | COMPLETED | 23/f87604 | 1 | 101.8 | 2.000 GB | 0.0 | 215.008 MB | 27.438 MB | 343.008 MB | 27.438 MB | 8h 0m | 21m 3s | 21m 3s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:08:42+00:00 | 9.191 GB | 8.933 GB | 286.822 kB | 287.427 kB | 1.586 GB | 1.330 GB | 33801 | WGBS:read_trimming (zr1394_7_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/23/f87604568a53c13f0b2a5c873f94be |
16 | WGBS:read_trimming | zr1394_9_s456 | COMPLETED | ea/d1223d | 1 | 102.4 | 2.000 GB | 0.0 | 216.387 MB | 28.707 MB | 344.387 MB | 28.707 MB | 8h 0m | 30m 46s | 30m 46s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:18:24+00:00 | 14.242 GB | 13.855 GB | 444.275 kB | 445.508 kB | 2.438 GB | 2.053 GB | 33775 | WGBS:read_trimming (zr1394_9_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/ea/d1223dc206a46dcdf3797b3211e78e |
17 | WGBS:read_trimming | zr1394_11_s456 | COMPLETED | ae/357164 | 1 | 101.9 | 2.000 GB | 0.0 | 214.852 MB | 27.090 MB | 342.852 MB | 27.090 MB | 8h 0m | 22m 53s | 22m 53s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:10:31+00:00 | 10.066 GB | 9.783 GB | 314.095 kB | 314.831 kB | 1.750 GB | 1.469 GB | 33989 | WGBS:read_trimming (zr1394_11_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/ae/3571640505de30ff79947cea028c24 |
18 | WGBS:read_trimming | zr1394_13_s456 | COMPLETED | a1/4bec03 | 1 | 102.2 | 2.000 GB | 0.0 | 215.320 MB | 27.840 MB | 343.320 MB | 27.840 MB | 8h 0m | 26m 19s | 26m 18s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:13:57+00:00 | 11.870 GB | 11.541 GB | 370.329 kB | 371.239 kB | 2.046 GB | 1.718 GB | 34036 | WGBS:read_trimming (zr1394_13_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/a1/4bec035bea6af834b1c02cf10c39c0 |
19 | WGBS:read_trimming | zr1394_18_s456 | COMPLETED | a5/538c5b | 1 | 101.9 | 2.000 GB | 0.0 | 215.164 MB | 27.566 MB | 343.164 MB | 27.566 MB | 8h 0m | 23m 2s | 23m 2s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:10:40+00:00 | 10.136 GB | 9.862 GB | 316.277 kB | 317.286 kB | 1.743 GB | 1.470 GB | 33784 | WGBS:read_trimming (zr1394_18_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/a5/538c5b52372e8c39b3b8cb479b4334 |
20 | WGBS:read_trimming | zr1394_1_s456 | COMPLETED | 3e/98ae15 | 1 | 101.7 | 2.000 GB | 0.0 | 214.695 MB | 26.934 MB | 342.695 MB | 26.934 MB | 8h 0m | 20m 10s | 20m 10s |
| 0 | 2022-07-21T14:47:38+00:00 | 2022-07-21T14:47:38+00:00 | 2022-07-21T15:07:48+00:00 | 8.640 GB | 8.400 GB | 269.649 kB | 270.312 kB | 1.487 GB | 1.248 GB | 33769 | WGBS:read_trimming (zr1394_1_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/3e/98ae15234607fed3186e7c5fc72643 |
21 | WGBS:fastqc | zr1394_8_s456 | COMPLETED | 28/5a7c1d | 1 | 105.1 | 500.000 MB | 0.1 | 3.373 GB | 246.070 MB | 3.436 GB | 246.070 MB | 2h 0m | 1m 47s | 1m 47s |
| 0 | 2022-07-21T15:04:10+00:00 | 2022-07-21T15:04:10+00:00 | 2022-07-21T15:05:58+00:00 | 1.054 GB | 1.776 MB | 2.084 MB | 5.790 kB | 28.000 kB | 2.000 MB | 43043 | WGBS:fastqc (zr1394_8_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/28/5a7c1d3f84ce101102e1141e025391 |
22 | WGBS:fastqc | zr1394_17_s456 | COMPLETED | 0f/528c83 | 1 | 104.0 | 500.000 MB | 0.1 | 3.448 GB | 326.297 MB | 3.451 GB | 328.867 MB | 2h 0m | 1m 59s | 1m 59s |
| 0 | 2022-07-21T15:05:40+00:00 | 2022-07-21T15:05:40+00:00 | 2022-07-21T15:07:39+00:00 | 1.149 GB | 1.779 MB | 2.276 MB | 5.842 kB | 0 | 2.004 MB | 48822 | WGBS:fastqc (zr1394_17_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/0f/528c83fb989d16d603674737dd5858 |
23 | WGBS:fastqc | zr1394_4_s456 | COMPLETED | e3/2d4d05 | 1 | 103.9 | 500.000 MB | 0.1 | 3.439 GB | 248.828 MB | 3.439 GB | 248.828 MB | 2h 0m | 2m 1s | 2m 1s |
| 0 | 2022-07-21T15:06:38+00:00 | 2022-07-21T15:06:39+00:00 | 2022-07-21T15:08:40+00:00 | 1.219 GB | 1.782 MB | 2.415 MB | 5.825 kB | 0 | 2.004 MB | 4262 | WGBS:fastqc (zr1394_4_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/e3/2d4d05ab1c4d2c521d2c057d40f505 |
24 | WGBS:fastqc | zr1394_2_s456 | COMPLETED | 5c/586c09 | 1 | 104.7 | 500.000 MB | 0.1 | 3.310 GB | 243.684 MB | 3.311 GB | 243.684 MB | 2h 0m | 2m 6s | 2m 6s |
| 0 | 2022-07-21T15:07:12+00:00 | 2022-07-21T15:07:12+00:00 | 2022-07-21T15:09:18+00:00 | 1.249 GB | 1.803 MB | 2.475 MB | 5.879 kB | 0 | 2.039 MB | 6773 | WGBS:fastqc (zr1394_2_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/5c/586c091403d1f81b3d909d34934ad0 |
25 | WGBS:fastqc | zr1394_6_s456 | COMPLETED | 9b/ba92a1 | 1 | 104.2 | 500.000 MB | 0.1 | 3.373 GB | 244.723 MB | 3.436 GB | 244.723 MB | 2h 0m | 2m 7s | 2m 7s |
| 0 | 2022-07-21T15:07:15+00:00 | 2022-07-21T15:07:15+00:00 | 2022-07-21T15:09:23+00:00 | 1.259 GB | 1.799 MB | 2.494 MB | 5.807 kB | 0 | 2.039 MB | 7130 | WGBS:fastqc (zr1394_6_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/9b/ba92a19590ef109f73af0956b7043b |
26 | WGBS:fastqc | zr1394_5_s456 | COMPLETED | 79/ccdb30 | 1 | 104.0 | 500.000 MB | 0.1 | 3.310 GB | 241.953 MB | 3.311 GB | 241.953 MB | 2h 0m | 2m 7s | 2m 7s |
| 0 | 2022-07-21T15:07:35+00:00 | 2022-07-21T15:07:35+00:00 | 2022-07-21T15:09:42+00:00 | 1.278 GB | 1.774 MB | 2.532 MB | 5.834 kB | 0 | 2.016 MB | 9901 | WGBS:fastqc (zr1394_5_s456) | - | - | - | 1 | - | /home/shared/8TB_HDD_01/sam/analyses/20220721-olur-zr1394_all_untrimmed-nextflow_epidiverse-wgbs-conda-trim_10bp_5prime/work/79/ccdb30975aa6f69e3d90ec1e845d16 |