# This file was produced by samtools stats (1.9+htslib-1.9) and can be plotted using plot-bamstats # This file contains statistics for all reads. # The command line was: stats sorted.bam # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) CHK b44f74ca 7d128744 41fffb1b # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. SN raw total sequences: 3829412 SN filtered sequences: 0 SN sequences: 3829412 SN is sorted: 1 SN 1st fragments: 3829412 SN last fragments: 0 SN reads mapped: 3829412 SN reads mapped and paired: 0 # paired-end technology bit set + both mates mapped SN reads unmapped: 0 SN reads properly paired: 0 # proper-pair bit set SN reads paired: 0 # paired-end technology bit set SN reads duplicated: 0 # PCR or optical duplicate bit set SN reads MQ0: 1930187 # mapped and MQ=0 SN reads QC failed: 0 SN non-primary alignments: 0 SN total length: 191954936 # ignores clipping SN total first fragment length: 191954936 # ignores clipping SN total last fragment length: 0 # ignores clipping SN bases mapped: 191954936 # ignores clipping SN bases mapped (cigar): 190113123 # more accurate SN bases trimmed: 0 SN bases duplicated: 0 SN mismatches: 3452774 # from NM fields SN error rate: 1.816168e-02 # mismatches / bases mapped (cigar) SN average length: 50 SN average first fragment length: 50 SN average last fragment length: 0 SN maximum length: 51 SN maximum first fragment length: 0 SN maximum last fragment length: 0 SN average quality: 34.3 SN insert size average: 0.0 SN insert size standard deviation: 0.0 SN inward oriented pairs: 0 SN outward oriented pairs: 0 SN pairs with other orientation: 0 SN pairs on different chromosomes: 0 SN percentage of properly paired reads (%): 0.0 # First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. # Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. GCF 0.75 9249 GCF 1.76 5628 GCF 2.26 4876 GCF 3.02 4740 GCF 3.77 5932 GCF 4.27 6179 GCF 4.77 6294 GCF 5.28 6332 GCF 5.78 8944 GCF 6.28 9517 GCF 6.78 9619 GCF 7.29 9708 GCF 7.79 15951 GCF 8.29 16974 GCF 8.79 17084 GCF 9.30 17145 GCF 9.80 30147 GCF 10.30 32031 GCF 10.80 32428 GCF 11.31 32598 GCF 11.81 56586 GCF 12.31 59717 GCF 12.81 60450 GCF 13.32 60727 GCF 13.82 94263 GCF 14.32 97531 GCF 14.82 100265 GCF 15.33 100898 GCF 15.83 147076 GCF 16.33 150665 GCF 16.83 153658 GCF 17.34 154365 GCF 17.84 201217 GCF 18.34 205945 GCF 18.84 209264 GCF 19.35 210805 GCF 19.85 257973 GCF 20.35 262481 GCF 20.85 264868 GCF 21.36 292243 GCF 21.86 302986 GCF 22.36 306277 GCF 22.86 308432 GCF 23.37 328560 GCF 23.87 338115 GCF 24.37 340782 GCF 24.87 342430 GCF 25.38 346270 GCF 25.88 350094 GCF 26.38 351847 GCF 26.88 352254 GCF 27.39 347934 GCF 27.89 348184 GCF 28.39 348121 GCF 28.89 347850 GCF 29.40 332982 GCF 29.90 328676 GCF 30.40 327339 GCF 30.90 327215 GCF 31.41 303418 GCF 31.91 296994 GCF 32.66 294338 GCF 33.42 265544 GCF 33.92 257268 GCF 34.42 257139 GCF 34.92 253661 GCF 35.43 222605 GCF 35.93 212719 GCF 36.43 212412 GCF 36.93 208690 GCF 37.44 178822 GCF 37.94 168719 GCF 38.44 167718 GCF 38.94 162737 GCF 39.45 134936 GCF 39.95 125412 GCF 40.45 124575 GCF 40.95 101254 GCF 41.46 98919 GCF 41.96 91360 GCF 42.46 90429 GCF 42.96 74345 GCF 43.47 73905 GCF 43.97 66778 GCF 44.47 66232 GCF 44.97 53586 GCF 45.48 53210 GCF 45.98 47821 GCF 46.48 47613 GCF 46.98 38443 GCF 47.49 38201 GCF 47.99 34958 GCF 48.49 34935 GCF 49.25 27607 GCF 50.25 23809 GCF 51.01 19015 GCF 51.51 18924 GCF 52.01 15744 GCF 52.51 15452 GCF 53.02 11439 GCF 53.52 11054 GCF 54.02 9229 GCF 54.52 8688 GCF 55.03 6353 GCF 55.53 5886 GCF 56.03 4711 GCF 56.53 4525 GCF 57.04 3118 GCF 57.54 2924 GCF 58.04 2451 GCF 58.54 2307 GCF 59.05 1650 GCF 59.55 1592 GCF 60.05 1283 GCF 60.55 940 GCF 61.06 815 GCF 61.56 789 GCF 62.06 650 GCF 62.56 473 GCF 63.07 406 GCF 63.57 402 GCF 64.07 348 GCF 64.57 267 GCF 65.08 238 GCF 65.58 241 GCF 66.08 178 GCF 66.83 148 GCF 67.59 133 GCF 68.09 107 GCF 68.84 75 GCF 69.60 65 GCF 70.10 48 GCF 70.60 39 GCF 71.11 37 GCF 71.61 29 GCF 72.11 27 GCF 72.61 21 GCF 73.37 13 GCF 74.12 16 GCF 74.62 18 GCF 75.13 17 GCF 75.63 13 GCF 76.13 8 GCF 76.88 6 GCF 77.64 4 GCF 78.14 5 GCF 79.15 3 GCF 80.15 2 GCF 80.65 1 GCF 81.41 0 GCF 82.16 1 GCF 83.67 2 GCF 85.18 1 GCF 85.93 2 GCF 86.68 3 GCF 87.19 4 GCF 87.69 3 GCF 88.69 2 GCF 89.70 0 GCF 90.45 1 GCF 91.46 2 GCF 92.46 1 GCF 93.22 0 GCF 94.47 1 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] GCC 1 40.15 29.99 13.78 16.09 0.33 0.00 GCC 2 44.46 28.20 10.73 16.61 0.00 0.00 GCC 3 50.63 24.26 7.44 17.68 0.00 0.00 GCC 4 46.24 26.19 6.71 20.86 0.00 0.00 GCC 5 40.87 27.16 3.49 28.48 0.00 0.00 GCC 6 41.99 23.92 3.56 30.52 0.00 0.00 GCC 7 43.75 24.16 3.68 28.41 0.00 0.00 GCC 8 43.68 23.35 3.77 29.20 0.00 0.00 GCC 9 43.52 23.97 3.98 28.54 0.00 0.00 GCC 10 42.52 24.72 4.12 28.64 0.00 0.00 GCC 11 42.54 24.55 4.33 28.58 0.07 0.00 GCC 12 42.61 24.53 4.32 28.55 0.00 0.00 GCC 13 42.71 24.60 4.30 28.39 0.00 0.00 GCC 14 42.97 24.81 4.29 27.93 0.00 0.00 GCC 15 42.66 24.60 4.40 28.33 0.00 0.00 GCC 16 42.39 24.56 4.17 28.88 0.00 0.00 GCC 17 42.03 24.36 4.13 29.48 0.00 0.00 GCC 18 42.33 23.76 4.23 29.68 0.00 0.00 GCC 19 42.09 24.31 4.20 29.40 0.00 0.00 GCC 20 43.40 23.66 4.30 28.65 0.00 0.00 GCC 21 43.86 23.49 4.39 28.26 0.00 0.00 GCC 22 43.92 23.36 4.46 28.26 0.00 0.00 GCC 23 43.46 23.66 4.34 28.54 0.00 0.00 GCC 24 43.57 23.34 4.39 28.70 0.00 0.00 GCC 25 43.33 23.58 4.30 28.80 0.00 0.00 GCC 26 43.30 23.37 4.38 28.95 0.00 0.00 GCC 27 43.39 23.19 4.37 29.05 0.00 0.00 GCC 28 43.75 22.94 4.24 29.06 0.00 0.00 GCC 29 43.90 22.95 4.12 29.03 0.00 0.00 GCC 30 44.76 22.07 4.14 29.04 0.00 0.00 GCC 31 44.86 21.92 4.23 28.98 0.00 0.00 GCC 32 45.06 22.05 4.19 28.70 0.00 0.00 GCC 33 45.53 21.94 4.20 28.33 0.00 0.00 GCC 34 45.67 21.72 4.24 28.36 0.00 0.00 GCC 35 45.46 22.04 4.18 28.31 0.00 0.00 GCC 36 45.69 21.54 4.21 28.56 0.00 0.00 GCC 37 45.91 21.49 4.32 28.29 0.00 0.00 GCC 38 45.56 21.63 4.16 28.64 0.00 0.00 GCC 39 45.95 21.53 4.20 28.32 0.00 0.00 GCC 40 45.96 21.42 4.16 28.45 0.00 0.00 GCC 41 45.89 21.36 4.26 28.49 0.00 0.00 GCC 42 45.91 21.25 4.23 28.61 0.00 0.00 GCC 43 45.96 21.41 4.28 28.35 0.00 0.00 GCC 44 46.20 21.40 4.23 28.17 0.00 0.00 GCC 45 46.16 21.24 4.26 28.34 0.00 0.00 GCC 46 46.43 21.19 4.23 28.15 0.00 0.00 GCC 47 46.26 21.32 4.23 28.18 0.00 0.00 GCC 48 46.80 20.94 4.26 27.99 0.00 0.00 GCC 49 48.14 18.89 4.29 28.67 4.93 0.00 GCC 50 51.85 16.09 4.14 27.92 0.00 0.00 GCC 51 62.63 1.78 4.80 30.79 0.00 0.00 # ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] # ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] LBC 1 40.15 29.99 13.78 16.09 0.33 0.00 LBC 2 44.46 28.20 10.73 16.61 0.00 0.00 LBC 3 50.63 24.26 7.44 17.68 0.00 0.00 LBC 4 46.24 26.19 6.71 20.86 0.00 0.00 LBC 5 40.87 27.16 3.49 28.48 0.00 0.00 LBC 6 41.99 23.92 3.56 30.52 0.00 0.00 LBC 7 43.75 24.16 3.68 28.41 0.00 0.00 LBC 8 43.68 23.35 3.77 29.20 0.00 0.00 LBC 9 43.52 23.97 3.98 28.54 0.00 0.00 LBC 10 42.52 24.72 4.12 28.64 0.00 0.00 LBC 11 42.54 24.55 4.33 28.58 0.07 0.00 LBC 12 42.61 24.53 4.32 28.55 0.00 0.00 LBC 13 42.71 24.60 4.30 28.39 0.00 0.00 LBC 14 42.97 24.81 4.29 27.93 0.00 0.00 LBC 15 42.66 24.60 4.40 28.33 0.00 0.00 LBC 16 42.39 24.56 4.17 28.88 0.00 0.00 LBC 17 42.03 24.36 4.13 29.48 0.00 0.00 LBC 18 42.33 23.76 4.23 29.68 0.00 0.00 LBC 19 42.09 24.31 4.20 29.40 0.00 0.00 LBC 20 43.40 23.66 4.30 28.65 0.00 0.00 LBC 21 43.86 23.49 4.39 28.26 0.00 0.00 LBC 22 43.92 23.36 4.46 28.26 0.00 0.00 LBC 23 43.46 23.66 4.34 28.54 0.00 0.00 LBC 24 43.57 23.34 4.39 28.70 0.00 0.00 LBC 25 43.33 23.58 4.30 28.80 0.00 0.00 LBC 26 43.30 23.37 4.38 28.95 0.00 0.00 LBC 27 43.39 23.19 4.37 29.05 0.00 0.00 LBC 28 43.75 22.94 4.24 29.06 0.00 0.00 LBC 29 43.90 22.95 4.12 29.03 0.00 0.00 LBC 30 44.76 22.07 4.14 29.04 0.00 0.00 LBC 31 44.86 21.92 4.23 28.98 0.00 0.00 LBC 32 45.06 22.05 4.19 28.70 0.00 0.00 LBC 33 45.53 21.94 4.20 28.33 0.00 0.00 LBC 34 45.67 21.72 4.24 28.36 0.00 0.00 LBC 35 45.46 22.04 4.18 28.31 0.00 0.00 LBC 36 45.69 21.54 4.21 28.56 0.00 0.00 LBC 37 45.91 21.49 4.32 28.29 0.00 0.00 LBC 38 45.56 21.63 4.16 28.64 0.00 0.00 LBC 39 45.95 21.53 4.20 28.32 0.00 0.00 LBC 40 45.96 21.42 4.16 28.45 0.00 0.00 LBC 41 45.89 21.36 4.26 28.49 0.00 0.00 LBC 42 45.91 21.25 4.23 28.61 0.00 0.00 LBC 43 45.96 21.41 4.28 28.35 0.00 0.00 LBC 44 46.20 21.40 4.23 28.17 0.00 0.00 LBC 45 46.16 21.24 4.26 28.34 0.00 0.00 LBC 46 46.43 21.19 4.23 28.15 0.00 0.00 LBC 47 46.26 21.32 4.23 28.18 0.00 0.00 LBC 48 46.80 20.94 4.26 27.99 0.00 0.00 LBC 49 48.14 18.89 4.29 28.67 4.93 0.00 LBC 50 51.85 16.09 4.14 27.92 0.00 0.00 LBC 51 62.63 1.78 4.80 30.79 0.00 0.00 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count RL 36 6639 RL 37 7313 RL 38 7928 RL 39 8541 RL 40 9666 RL 41 10405 RL 42 10797 RL 43 12559 RL 44 15210 RL 45 20948 RL 46 37350 RL 47 56159 RL 48 167040 RL 49 287572 RL 50 809724 RL 51 2361561 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions ID 1 17408 31361 ID 2 4259 7373 ID 3 895 1348 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) IC 2 0 14 0 19 IC 3 0 35 0 34 IC 4 0 90 0 70 IC 5 0 126 0 181 IC 6 0 211 0 198 IC 7 0 187 0 168 IC 8 0 107 0 197 IC 9 0 155 0 175 IC 10 0 148 0 179 IC 11 0 119 0 149 IC 12 0 167 0 152 IC 13 0 184 0 140 IC 14 0 92 0 138 IC 15 0 124 0 186 IC 16 0 180 0 192 IC 17 0 125 0 161 IC 18 0 124 0 161 IC 19 0 92 0 149 IC 20 0 117 0 127 IC 21 0 82 0 136 IC 22 0 33 0 46 IC 23 0 18 0 39 IC 24 0 29 0 34 IC 25 0 42 0 33 IC 26 0 36 0 44 IC 27 0 52 0 86 IC 28 0 86 0 163 IC 29 0 135 0 308 IC 30 0 234 0 2036 IC 31 0 1017 0 2192 IC 32 0 1086 0 2129 IC 33 0 1360 0 2303 IC 34 0 1264 0 2300 IC 35 0 1315 0 2319 IC 36 0 1152 0 2366 IC 37 0 1129 0 2249 IC 38 0 1151 0 2183 IC 39 0 1118 0 2226 IC 40 0 1099 0 2203 IC 41 0 1190 0 2077 IC 42 0 1147 0 2309 IC 43 0 1230 0 2080 IC 44 0 1275 0 1874 IC 45 0 1172 0 1677 IC 46 0 1018 0 1257 IC 47 0 422 0 461 IC 48 0 186 0 140 IC 49 0 71 0 36 IC 50 0 16 0 0 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. COV [1-1] 1 29982501 COV [2-2] 2 9698008 COV [3-3] 3 4794030 COV [4-4] 4 2822582 COV [5-5] 5 1828016 COV [6-6] 6 1259596 COV [7-7] 7 912488 COV [8-8] 8 677781 COV [9-9] 9 523578 COV [10-10] 10 409622 COV [11-11] 11 324773 COV [12-12] 12 266811 COV [13-13] 13 221885 COV [14-14] 14 181952 COV [15-15] 15 154693 COV [16-16] 16 130570 COV [17-17] 17 115884 COV [18-18] 18 97996 COV [19-19] 19 85467 COV [20-20] 20 76472 COV [21-21] 21 68536 COV [22-22] 22 59740 COV [23-23] 23 53881 COV [24-24] 24 49310 COV [25-25] 25 45016 COV [26-26] 26 42286 COV [27-27] 27 38052 COV [28-28] 28 35249 COV [29-29] 29 30798 COV [30-30] 30 29012 COV [31-31] 31 26974 COV [32-32] 32 25005 COV [33-33] 33 21786 COV [34-34] 34 21984 COV [35-35] 35 20059 COV [36-36] 36 18913 COV [37-37] 37 17392 COV [38-38] 38 16531 COV [39-39] 39 15343 COV [40-40] 40 14474 COV [41-41] 41 14365 COV [42-42] 42 13039 COV [43-43] 43 12340 COV [44-44] 44 11351 COV [45-45] 45 10718 COV [46-46] 46 10240 COV [47-47] 47 9738 COV [48-48] 48 10074 COV [49-49] 49 8811 COV [50-50] 50 8698 COV [51-51] 51 8072 COV [52-52] 52 8289 COV [53-53] 53 7521 COV [54-54] 54 7721 COV [55-55] 55 7360 COV [56-56] 56 6508 COV [57-57] 57 6126 COV [58-58] 58 6381 COV [59-59] 59 6069 COV [60-60] 60 5717 COV [61-61] 61 5041 COV [62-62] 62 4957 COV [63-63] 63 4487 COV [64-64] 64 4420 COV [65-65] 65 4323 COV [66-66] 66 4719 COV [67-67] 67 4031 COV [68-68] 68 4101 COV [69-69] 69 3849 COV [70-70] 70 3667 COV [71-71] 71 3278 COV [72-72] 72 4199 COV [73-73] 73 3666 COV [74-74] 74 3470 COV [75-75] 75 3218 COV [76-76] 76 3168 COV [77-77] 77 2759 COV [78-78] 78 2683 COV [79-79] 79 2453 COV [80-80] 80 2739 COV [81-81] 81 2391 COV [82-82] 82 2497 COV [83-83] 83 2299 COV [84-84] 84 2276 COV [85-85] 85 2100 COV [86-86] 86 2194 COV [87-87] 87 2196 COV [88-88] 88 2093 COV [89-89] 89 1999 COV [90-90] 90 2099 COV [91-91] 91 1945 COV [92-92] 92 2065 COV [93-93] 93 1878 COV [94-94] 94 1890 COV [95-95] 95 1920 COV [96-96] 96 1716 COV [97-97] 97 1730 COV [98-98] 98 1589 COV [99-99] 99 1524 COV [100-100] 100 1619 COV [101-101] 101 1479 COV [102-102] 102 1515 COV [103-103] 103 1326 COV [104-104] 104 1443 COV [105-105] 105 1241 COV [106-106] 106 1267 COV [107-107] 107 1149 COV [108-108] 108 1177 COV [109-109] 109 1231 COV [110-110] 110 1229 COV [111-111] 111 1196 COV [112-112] 112 1238 COV [113-113] 113 1063 COV [114-114] 114 1171 COV [115-115] 115 1116 COV [116-116] 116 899 COV [117-117] 117 1030 COV [118-118] 118 1068 COV [119-119] 119 1135 COV [120-120] 120 1156 COV [121-121] 121 951 COV [122-122] 122 923 COV [123-123] 123 880 COV [124-124] 124 1037 COV [125-125] 125 941 COV [126-126] 126 770 COV [127-127] 127 994 COV [128-128] 128 891 COV [129-129] 129 787 COV [130-130] 130 810 COV [131-131] 131 672 COV [132-132] 132 674 COV [133-133] 133 910 COV [134-134] 134 802 COV [135-135] 135 671 COV [136-136] 136 838 COV [137-137] 137 762 COV [138-138] 138 834 COV [139-139] 139 767 COV [140-140] 140 583 COV [141-141] 141 587 COV [142-142] 142 594 COV [143-143] 143 678 COV [144-144] 144 463 COV [145-145] 145 556 COV [146-146] 146 491 COV [147-147] 147 617 COV [148-148] 148 552 COV [149-149] 149 605 COV [150-150] 150 615 COV [151-151] 151 608 COV [152-152] 152 516 COV [153-153] 153 432 COV [154-154] 154 409 COV [155-155] 155 456 COV [156-156] 156 484 COV [157-157] 157 479 COV [158-158] 158 488 COV [159-159] 159 568 COV [160-160] 160 418 COV [161-161] 161 377 COV [162-162] 162 436 COV [163-163] 163 367 COV [164-164] 164 408 COV [165-165] 165 564 COV [166-166] 166 432 COV [167-167] 167 432 COV [168-168] 168 460 COV [169-169] 169 449 COV [170-170] 170 288 COV [171-171] 171 408 COV [172-172] 172 329 COV [173-173] 173 461 COV [174-174] 174 335 COV [175-175] 175 408 COV [176-176] 176 440 COV [177-177] 177 276 COV [178-178] 178 320 COV [179-179] 179 344 COV [180-180] 180 380 COV [181-181] 181 332 COV [182-182] 182 312 COV [183-183] 183 291 COV [184-184] 184 296 COV [185-185] 185 257 COV [186-186] 186 242 COV [187-187] 187 266 COV [188-188] 188 232 COV [189-189] 189 226 COV [190-190] 190 209 COV [191-191] 191 261 COV [192-192] 192 225 COV [193-193] 193 310 COV [194-194] 194 280 COV [195-195] 195 259 COV [196-196] 196 207 COV [197-197] 197 321 COV [198-198] 198 291 COV [199-199] 199 290 COV [200-200] 200 216 COV [201-201] 201 268 COV [202-202] 202 320 COV [203-203] 203 235 COV [204-204] 204 245 COV [205-205] 205 217 COV [206-206] 206 287 COV [207-207] 207 213 COV [208-208] 208 203 COV [209-209] 209 351 COV [210-210] 210 196 COV [211-211] 211 223 COV [212-212] 212 124 COV [213-213] 213 116 COV [214-214] 214 133 COV [215-215] 215 150 COV [216-216] 216 166 COV [217-217] 217 157 COV [218-218] 218 241 COV [219-219] 219 129 COV [220-220] 220 229 COV [221-221] 221 201 COV [222-222] 222 231 COV [223-223] 223 191 COV [224-224] 224 266 COV [225-225] 225 125 COV [226-226] 226 247 COV [227-227] 227 122 COV [228-228] 228 168 COV [229-229] 229 253 COV [230-230] 230 219 COV [231-231] 231 140 COV [232-232] 232 159 COV [233-233] 233 195 COV [234-234] 234 129 COV [235-235] 235 153 COV [236-236] 236 129 COV [237-237] 237 117 COV [238-238] 238 184 COV [239-239] 239 152 COV [240-240] 240 104 COV [241-241] 241 121 COV [242-242] 242 151 COV [243-243] 243 112 COV [244-244] 244 205 COV [245-245] 245 148 COV [246-246] 246 133 COV [247-247] 247 145 COV [248-248] 248 172 COV [249-249] 249 196 COV [250-250] 250 110 COV [251-251] 251 134 COV [252-252] 252 159 COV [253-253] 253 152 COV [254-254] 254 78 COV [255-255] 255 106 COV [256-256] 256 116 COV [257-257] 257 100 COV [258-258] 258 117 COV [259-259] 259 130 COV [260-260] 260 140 COV [261-261] 261 114 COV [262-262] 262 184 COV [263-263] 263 115 COV [264-264] 264 149 COV [265-265] 265 67 COV [266-266] 266 131 COV [267-267] 267 148 COV [268-268] 268 145 COV [269-269] 269 170 COV [270-270] 270 73 COV [271-271] 271 90 COV [272-272] 272 133 COV [273-273] 273 80 COV [274-274] 274 153 COV [275-275] 275 180 COV [276-276] 276 94 COV [277-277] 277 75 COV [278-278] 278 61 COV [279-279] 279 86 COV [280-280] 280 114 COV [281-281] 281 78 COV [282-282] 282 177 COV [283-283] 283 185 COV [284-284] 284 75 COV [285-285] 285 58 COV [286-286] 286 60 COV [287-287] 287 81 COV [288-288] 288 56 COV [289-289] 289 59 COV [290-290] 290 56 COV [291-291] 291 87 COV [292-292] 292 65 COV [293-293] 293 108 COV [294-294] 294 127 COV [295-295] 295 98 COV [296-296] 296 81 COV [297-297] 297 96 COV [298-298] 298 69 COV [299-299] 299 54 COV [300-300] 300 72 COV [301-301] 301 50 COV [302-302] 302 55 COV [303-303] 303 71 COV [304-304] 304 86 COV [305-305] 305 74 COV [306-306] 306 151 COV [307-307] 307 88 COV [308-308] 308 126 COV [309-309] 309 74 COV [310-310] 310 72 COV [311-311] 311 63 COV [312-312] 312 86 COV [313-313] 313 61 COV [314-314] 314 57 COV [315-315] 315 71 COV [316-316] 316 102 COV [317-317] 317 73 COV [318-318] 318 76 COV [319-319] 319 76 COV [320-320] 320 42 COV [321-321] 321 28 COV [322-322] 322 65 COV [323-323] 323 89 COV [324-324] 324 61 COV [325-325] 325 55 COV [326-326] 326 61 COV [327-327] 327 59 COV [328-328] 328 78 COV [329-329] 329 37 COV [330-330] 330 29 COV [331-331] 331 59 COV [332-332] 332 58 COV [333-333] 333 92 COV [334-334] 334 56 COV [335-335] 335 55 COV [336-336] 336 60 COV [337-337] 337 78 COV [338-338] 338 61 COV [339-339] 339 99 COV [340-340] 340 87 COV [341-341] 341 34 COV [342-342] 342 74 COV [343-343] 343 28 COV [344-344] 344 32 COV [345-345] 345 32 COV [346-346] 346 57 COV [347-347] 347 27 COV [348-348] 348 89 COV [349-349] 349 28 COV [350-350] 350 75 COV [351-351] 351 32 COV [352-352] 352 51 COV [353-353] 353 57 COV [354-354] 354 33 COV [355-355] 355 46 COV [356-356] 356 29 COV [357-357] 357 21 COV [358-358] 358 24 COV [359-359] 359 28 COV [360-360] 360 53 COV [361-361] 361 19 COV [362-362] 362 22 COV [363-363] 363 23 COV [364-364] 364 21 COV [365-365] 365 42 COV [366-366] 366 17 COV [367-367] 367 24 COV [368-368] 368 27 COV [369-369] 369 38 COV [370-370] 370 23 COV [371-371] 371 29 COV [372-372] 372 20 COV [373-373] 373 24 COV [374-374] 374 65 COV [375-375] 375 23 COV [376-376] 376 44 COV [377-377] 377 68 COV [378-378] 378 39 COV [379-379] 379 43 COV [380-380] 380 36 COV [381-381] 381 38 COV [382-382] 382 44 COV [383-383] 383 34 COV [384-384] 384 31 COV [385-385] 385 16 COV [386-386] 386 17 COV [387-387] 387 29 COV [388-388] 388 32 COV [389-389] 389 35 COV [390-390] 390 60 COV [391-391] 391 36 COV [392-392] 392 28 COV [393-393] 393 38 COV [394-394] 394 31 COV [395-395] 395 48 COV [396-396] 396 43 COV [397-397] 397 79 COV [398-398] 398 98 COV [399-399] 399 73 COV [400-400] 400 83 COV [401-401] 401 11 COV [402-402] 402 47 COV [403-403] 403 33 COV [404-404] 404 33 COV [405-405] 405 37 COV [406-406] 406 34 COV [407-407] 407 85 COV [408-408] 408 21 COV [409-409] 409 28 COV [410-410] 410 45 COV [411-411] 411 27 COV [412-412] 412 61 COV [413-413] 413 73 COV [414-414] 414 73 COV [415-415] 415 27 COV [416-416] 416 58 COV [417-417] 417 42 COV [418-418] 418 33 COV [419-419] 419 57 COV [420-420] 420 61 COV [421-421] 421 24 COV [422-422] 422 13 COV [423-423] 423 15 COV [424-424] 424 18 COV [425-425] 425 20 COV [426-426] 426 61 COV [427-427] 427 34 COV [428-428] 428 21 COV [429-429] 429 26 COV [430-430] 430 19 COV [431-431] 431 65 COV [432-432] 432 55 COV [433-433] 433 23 COV [434-434] 434 30 COV [435-435] 435 48 COV [436-436] 436 17 COV [437-437] 437 27 COV [438-438] 438 41 COV [439-439] 439 16 COV [440-440] 440 17 COV [441-441] 441 17 COV [442-442] 442 26 COV [443-443] 443 36 COV [444-444] 444 19 COV [445-445] 445 23 COV [446-446] 446 27 COV [447-447] 447 56 COV [448-448] 448 24 COV [449-449] 449 73 COV [450-450] 450 28 COV [451-451] 451 25 COV [452-452] 452 48 COV [453-453] 453 22 COV [454-454] 454 29 COV [455-455] 455 23 COV [456-456] 456 36 COV [457-457] 457 20 COV [458-458] 458 17 COV [459-459] 459 30 COV [460-460] 460 40 COV [461-461] 461 30 COV [462-462] 462 18 COV [463-463] 463 24 COV [464-464] 464 9 COV [465-465] 465 28 COV [466-466] 466 28 COV [467-467] 467 13 COV [468-468] 468 11 COV [469-469] 469 10 COV [470-470] 470 28 COV [471-471] 471 49 COV [472-472] 472 30 COV [473-473] 473 9 COV [474-474] 474 5 COV [475-475] 475 11 COV [476-476] 476 51 COV [477-477] 477 18 COV [478-478] 478 22 COV [479-479] 479 28 COV [480-480] 480 12 COV [481-481] 481 16 COV [482-482] 482 19 COV [483-483] 483 18 COV [484-484] 484 19 COV [485-485] 485 13 COV [486-486] 486 13 COV [487-487] 487 13 COV [488-488] 488 10 COV [489-489] 489 9 COV [490-490] 490 19 COV [491-491] 491 28 COV [492-492] 492 37 COV [493-493] 493 8 COV [494-494] 494 17 COV [495-495] 495 12 COV [496-496] 496 15 COV [497-497] 497 16 COV [498-498] 498 16 COV [499-499] 499 24 COV [500-500] 500 13 COV [501-501] 501 12 COV [502-502] 502 30 COV [503-503] 503 20 COV [504-504] 504 24 COV [505-505] 505 8 COV [506-506] 506 15 COV [507-507] 507 46 COV [508-508] 508 27 COV [509-509] 509 18 COV [510-510] 510 13 COV [511-511] 511 23 COV [512-512] 512 13 COV [513-513] 513 7 COV [514-514] 514 12 COV [515-515] 515 10 COV [516-516] 516 10 COV [517-517] 517 39 COV [518-518] 518 9 COV [519-519] 519 16 COV [520-520] 520 5 COV [521-521] 521 8 COV [522-522] 522 4 COV [523-523] 523 7 COV [524-524] 524 4 COV [525-525] 525 2 COV [526-526] 526 5 COV [527-527] 527 7 COV [528-528] 528 4 COV [529-529] 529 5 COV [530-530] 530 4 COV [531-531] 531 11 COV [532-532] 532 8 COV [533-533] 533 9 COV [534-534] 534 14 COV [535-535] 535 25 COV [536-536] 536 59 COV [537-537] 537 2 COV [538-538] 538 7 COV [539-539] 539 9 COV [540-540] 540 13 COV [541-541] 541 8 COV [542-542] 542 10 COV [543-543] 543 12 COV [544-544] 544 10 COV [545-545] 545 8 COV [546-546] 546 28 COV [547-547] 547 8 COV [548-548] 548 3 COV [549-549] 549 11 COV [550-550] 550 8 COV [551-551] 551 6 COV [552-552] 552 9 COV [553-553] 553 17 COV [554-554] 554 52 COV [555-555] 555 16 COV [556-556] 556 12 COV [557-557] 557 1 COV [558-558] 558 4 COV [559-559] 559 22 COV [560-560] 560 12 COV [561-561] 561 11 COV [562-562] 562 20 COV [563-563] 563 16 COV [564-564] 564 7 COV [565-565] 565 10 COV [566-566] 566 3 COV [567-567] 567 3 COV [568-568] 568 7 COV [569-569] 569 1 COV [570-570] 570 4 COV [571-571] 571 5 COV [572-572] 572 2 COV [573-573] 573 6 COV [574-574] 574 4 COV [575-575] 575 6 COV [576-576] 576 14 COV [577-577] 577 18 COV [578-578] 578 1 COV [579-579] 579 1 COV [580-580] 580 16 COV [581-581] 581 1 COV [582-582] 582 12 COV [583-583] 583 4 COV [584-584] 584 9 COV [585-585] 585 10 COV [586-586] 586 8 COV [587-587] 587 3 COV [588-588] 588 1 COV [589-589] 589 14 COV [590-590] 590 6 COV [591-591] 591 9 COV [592-592] 592 7 COV [593-593] 593 12 COV [594-594] 594 17 COV [595-595] 595 6 COV [596-596] 596 3 COV [597-597] 597 9 COV [598-598] 598 4 COV [599-599] 599 3 COV [600-600] 600 8 COV [601-601] 601 3 COV [602-602] 602 3 COV [603-603] 603 9 COV [604-604] 604 60 COV [605-605] 605 6 COV [606-606] 606 6 COV [607-607] 607 16 COV [608-608] 608 12 COV [609-609] 609 3 COV [610-610] 610 5 COV [611-611] 611 10 COV [612-612] 612 10 COV [613-613] 613 10 COV [614-614] 614 21 COV [615-615] 615 8 COV [616-616] 616 8 COV [617-617] 617 11 COV [618-618] 618 13 COV [619-619] 619 13 COV [620-620] 620 7 COV [621-621] 621 10 COV [622-622] 622 5 COV [623-623] 623 5 COV [624-624] 624 8 COV [625-625] 625 11 COV [626-626] 626 6 COV [627-627] 627 8 COV [628-628] 628 46 COV [629-629] 629 9 COV [630-630] 630 16 COV [631-631] 631 8 COV [632-632] 632 16 COV [633-633] 633 43 COV [634-634] 634 37 COV [635-635] 635 10 COV [636-636] 636 28 COV [637-637] 637 6 COV [638-638] 638 6 COV [639-639] 639 3 COV [640-640] 640 8 COV [641-641] 641 20 COV [642-642] 642 9 COV [643-643] 643 5 COV [644-644] 644 5 COV [645-645] 645 5 COV [646-646] 646 4 COV [647-647] 647 4 COV [648-648] 648 41 COV [649-649] 649 2 COV [650-650] 650 2 COV [651-651] 651 2 COV [652-652] 652 4 COV [653-653] 653 1 COV [654-654] 654 1 COV [655-655] 655 7 COV [656-656] 656 4 COV [657-657] 657 2 COV [658-658] 658 4 COV [659-659] 659 7 COV [660-660] 660 4 COV [661-661] 661 2 COV [662-662] 662 6 COV [663-663] 663 1 COV [664-664] 664 5 COV [665-665] 665 4 COV [666-666] 666 4 COV [667-667] 667 5 COV [668-668] 668 5 COV [669-669] 669 4 COV [670-670] 670 7 COV [671-671] 671 8 COV [672-672] 672 4 COV [673-673] 673 6 COV [674-674] 674 5 COV [675-675] 675 5 COV [676-676] 676 7 COV [677-677] 677 7 COV [678-678] 678 21 COV [679-679] 679 7 COV [680-680] 680 38 COV [681-681] 681 1 COV [682-682] 682 4 COV [683-683] 683 12 COV [684-684] 684 6 COV [685-685] 685 7 COV [686-686] 686 2 COV [687-687] 687 4 COV [688-688] 688 4 COV [689-689] 689 6 COV [691-691] 691 8 COV [692-692] 692 10 COV [693-693] 693 15 COV [694-694] 694 22 COV [695-695] 695 1 COV [696-696] 696 2 COV [697-697] 697 3 COV [698-698] 698 12 COV [699-699] 699 8 COV [700-700] 700 6 COV [701-701] 701 15 COV [702-702] 702 8 COV [703-703] 703 5 COV [704-704] 704 4 COV [705-705] 705 4 COV [706-706] 706 5 COV [707-707] 707 6 COV [708-708] 708 3 COV [709-709] 709 1 COV [710-710] 710 6 COV [711-711] 711 22 COV [712-712] 712 4 COV [713-713] 713 2 COV [714-714] 714 4 COV [715-715] 715 6 COV [716-716] 716 2 COV [717-717] 717 3 COV [718-718] 718 9 COV [719-719] 719 9 COV [720-720] 720 7 COV [721-721] 721 2 COV [722-722] 722 6 COV [723-723] 723 5 COV [724-724] 724 8 COV [725-725] 725 7 COV [726-726] 726 4 COV [727-727] 727 23 COV [728-728] 728 4 COV [729-729] 729 2 COV [731-731] 731 4 COV [732-732] 732 4 COV [733-733] 733 5 COV [734-734] 734 5 COV [735-735] 735 2 COV [736-736] 736 1 COV [737-737] 737 4 COV [738-738] 738 40 COV [740-740] 740 2 COV [743-743] 743 2 COV [745-745] 745 4 COV [746-746] 746 3 COV [747-747] 747 2 COV [748-748] 748 1 COV [749-749] 749 1 COV [750-750] 750 1 COV [751-751] 751 28 COV [752-752] 752 20 COV [754-754] 754 4 COV [755-755] 755 2 COV [756-756] 756 4 COV [757-757] 757 2 COV [758-758] 758 7 COV [759-759] 759 13 COV [760-760] 760 2 COV [762-762] 762 3 COV [763-763] 763 2 COV [764-764] 764 2 COV [765-765] 765 4 COV [766-766] 766 4 COV [767-767] 767 2 COV [768-768] 768 2 COV [769-769] 769 4 COV [770-770] 770 1 COV [773-773] 773 7 COV [774-774] 774 6 COV [776-776] 776 18 COV [779-779] 779 1 COV [780-780] 780 1 COV [781-781] 781 5 COV [782-782] 782 4 COV [783-783] 783 8 COV [784-784] 784 19 COV [785-785] 785 2 COV [786-786] 786 2 COV [787-787] 787 2 COV [788-788] 788 1 COV [789-789] 789 1 COV [790-790] 790 1 COV [791-791] 791 7 COV [792-792] 792 2 COV [793-793] 793 3 COV [794-794] 794 12 COV [795-795] 795 11 COV [797-797] 797 4 COV [798-798] 798 2 COV [799-799] 799 2 COV [801-801] 801 4 COV [803-803] 803 1 COV [804-804] 804 5 COV [805-805] 805 2 COV [806-806] 806 1 COV [807-807] 807 1 COV [809-809] 809 8 COV [810-810] 810 9 COV [811-811] 811 2 COV [812-812] 812 1 COV [813-813] 813 2 COV [814-814] 814 4 COV [815-815] 815 1 COV [817-817] 817 2 COV [820-820] 820 2 COV [821-821] 821 1 COV [822-822] 822 3 COV [824-824] 824 2 COV [825-825] 825 2 COV [827-827] 827 3 COV [828-828] 828 3 COV [829-829] 829 4 COV [830-830] 830 5 COV [831-831] 831 2 COV [832-832] 832 4 COV [833-833] 833 16 COV [834-834] 834 2 COV [835-835] 835 3 COV [837-837] 837 2 COV [838-838] 838 4 COV [839-839] 839 1 COV [840-840] 840 2 COV [842-842] 842 5 COV [844-844] 844 1 COV [845-845] 845 1 COV [846-846] 846 1 COV [848-848] 848 2 COV [852-852] 852 1 COV [853-853] 853 1 COV [854-854] 854 1 COV [857-857] 857 2 COV [859-859] 859 2 COV [860-860] 860 1 COV [861-861] 861 2 COV [862-862] 862 1 COV [865-865] 865 3 COV [866-866] 866 1 COV [867-867] 867 1 COV [869-869] 869 1 COV [870-870] 870 1 COV [871-871] 871 1 COV [872-872] 872 1 COV [873-873] 873 1 COV [874-874] 874 3 COV [876-876] 876 4 COV [877-877] 877 1 COV [879-879] 879 2 COV [881-881] 881 2 COV [882-882] 882 1 COV [883-883] 883 2 COV [884-884] 884 1 COV [886-886] 886 2 COV [889-889] 889 3 COV [890-890] 890 1 COV [893-893] 893 1 COV [894-894] 894 2 COV [895-895] 895 1 COV [896-896] 896 1 COV [897-897] 897 2 COV [898-898] 898 6 COV [903-903] 903 1 COV [905-905] 905 2 COV [907-907] 907 1 COV [908-908] 908 1 COV [909-909] 909 2 COV [913-913] 913 3 COV [914-914] 914 3 COV [915-915] 915 1 COV [916-916] 916 1 COV [918-918] 918 2 COV [919-919] 919 1 COV [920-920] 920 2 COV [921-921] 921 3 COV [923-923] 923 2 COV [926-926] 926 4 COV [927-927] 927 1 COV [928-928] 928 2 COV [930-930] 930 1 COV [931-931] 931 3 COV [933-933] 933 1 COV [935-935] 935 1 COV [936-936] 936 1 COV [937-937] 937 2 COV [938-938] 938 1 COV [939-939] 939 1 COV [942-942] 942 1 COV [944-944] 944 4 COV [945-945] 945 2 COV [946-946] 946 1 COV [947-947] 947 1 COV [949-949] 949 1 COV [953-953] 953 1 COV [954-954] 954 2 COV [955-955] 955 1 COV [956-956] 956 1 COV [957-957] 957 2 COV [958-958] 958 1 COV [959-959] 959 1 COV [960-960] 960 2 COV [961-961] 961 1 COV [962-962] 962 1 COV [963-963] 963 1 COV [964-964] 964 4 COV [965-965] 965 2 COV [966-966] 966 3 COV [967-967] 967 1 COV [969-969] 969 2 COV [970-970] 970 4 COV [971-971] 971 1 COV [973-973] 973 1 COV [974-974] 974 2 COV [975-975] 975 2 COV [976-976] 976 3 COV [980-980] 980 2 COV [981-981] 981 1 COV [982-982] 982 1 COV [983-983] 983 1 COV [984-984] 984 1 COV [985-985] 985 1 COV [986-986] 986 2 COV [988-988] 988 1 COV [990-990] 990 1 COV [993-993] 993 1 COV [994-994] 994 2 COV [995-995] 995 2 COV [996-996] 996 3 COV [997-997] 997 1 COV [998-998] 998 1 COV [999-999] 999 1 COV [1000-1000] 1000 1 COV [1000<] 1000 735 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile GCD 0.0 0.004 0.000 0.000 0.000 0.000 0.000 GCD 1.0 0.009 0.010 0.010 1.955 19.692 19.692 GCD 2.0 0.015 0.002 0.002 0.002 0.460 0.460 GCD 3.0 0.021 0.085 0.085 0.165 0.730 0.730 GCD 4.0 0.025 0.222 0.222 0.222 0.663 0.663 GCD 5.0 0.028 0.005 0.005 0.005 0.697 0.697 GCD 6.0 0.049 0.002 0.010 0.100 0.495 0.608 GCD 7.0 0.070 0.005 0.007 0.100 0.645 1.300 GCD 8.0 0.093 0.002 0.002 0.010 0.018 0.140 GCD 9.0 0.117 0.002 0.007 0.023 0.050 0.147 GCD 10.0 0.182 0.002 0.002 0.013 0.052 0.155 GCD 11.0 0.238 0.005 0.010 0.027 0.065 0.095 GCD 12.0 0.310 0.005 0.007 0.035 0.087 0.338 GCD 13.0 0.425 0.005 0.007 0.018 0.058 0.145 GCD 14.0 0.543 0.002 0.005 0.013 0.045 0.115 GCD 15.0 0.739 0.005 0.010 0.020 0.055 0.100 GCD 16.0 1.144 0.002 0.007 0.023 0.058 0.115 GCD 17.0 1.617 0.007 0.013 0.025 0.060 0.130 GCD 18.0 2.434 0.005 0.013 0.027 0.060 0.132 GCD 19.0 3.761 0.007 0.018 0.032 0.062 0.130 GCD 20.0 5.850 0.010 0.020 0.043 0.083 0.177 GCD 21.0 9.152 0.015 0.025 0.047 0.102 0.213 GCD 22.0 14.301 0.018 0.030 0.060 0.120 0.230 GCD 23.0 21.336 0.020 0.038 0.075 0.147 0.273 GCD 24.0 30.683 0.023 0.043 0.087 0.175 0.315 GCD 25.0 41.718 0.025 0.050 0.100 0.200 0.360 GCD 26.0 53.075 0.027 0.055 0.112 0.218 0.387 GCD 27.0 64.019 0.032 0.062 0.132 0.250 0.430 GCD 28.0 73.171 0.032 0.062 0.135 0.265 0.447 GCD 29.0 80.626 0.032 0.065 0.135 0.278 0.488 GCD 30.0 86.204 0.032 0.068 0.147 0.298 0.540 GCD 31.0 90.508 0.030 0.060 0.138 0.275 0.525 GCD 32.0 93.429 0.032 0.065 0.147 0.305 0.572 GCD 33.0 95.458 0.027 0.062 0.130 0.285 0.577 GCD 34.0 96.823 0.027 0.060 0.135 0.325 0.538 GCD 35.0 97.805 0.020 0.065 0.150 0.298 0.527 GCD 36.0 98.482 0.023 0.062 0.147 0.357 0.717 GCD 37.0 98.960 0.020 0.052 0.127 0.278 0.560 GCD 38.0 99.257 0.027 0.052 0.130 0.382 0.785 GCD 39.0 99.457 0.018 0.055 0.153 0.347 0.692 GCD 40.0 99.614 0.005 0.038 0.145 0.370 0.658 GCD 41.0 99.731 0.013 0.062 0.127 0.300 0.855 GCD 42.0 99.803 0.005 0.062 0.153 0.605 1.023 GCD 43.0 99.860 0.002 0.023 0.110 0.273 0.468 GCD 44.0 99.905 0.015 0.055 0.145 0.220 0.360 GCD 45.0 99.932 0.018 0.047 0.175 0.463 1.567 GCD 46.0 99.951 0.007 0.007 0.215 0.595 0.647 GCD 47.0 99.968 0.002 0.002 0.108 0.127 0.738 GCD 48.0 99.977 0.140 0.140 0.338 0.525 0.670 GCD 49.0 99.987 0.005 0.005 0.527 0.935 1.635 GCD 50.0 99.992 0.002 0.002 0.145 3.392 3.392 GCD 51.0 100.000 0.002 0.002 0.005 0.138 1.847