# This file was produced by samtools stats (1.9+htslib-1.9) and can be plotted using plot-bamstats # This file contains statistics for all reads. # The command line was: stats sorted.bam # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) CHK 63113946 d2e78c1e 75675b07 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. SN raw total sequences: 3797687 SN filtered sequences: 0 SN sequences: 3797687 SN is sorted: 1 SN 1st fragments: 3797687 SN last fragments: 0 SN reads mapped: 3797687 SN reads mapped and paired: 0 # paired-end technology bit set + both mates mapped SN reads unmapped: 0 SN reads properly paired: 0 # proper-pair bit set SN reads paired: 0 # paired-end technology bit set SN reads duplicated: 0 # PCR or optical duplicate bit set SN reads MQ0: 1800297 # mapped and MQ=0 SN reads QC failed: 0 SN non-primary alignments: 0 SN total length: 190328423 # ignores clipping SN total first fragment length: 190328423 # ignores clipping SN total last fragment length: 0 # ignores clipping SN bases mapped: 190328423 # ignores clipping SN bases mapped (cigar): 188552695 # more accurate SN bases trimmed: 0 SN bases duplicated: 0 SN mismatches: 3287607 # from NM fields SN error rate: 1.743601e-02 # mismatches / bases mapped (cigar) SN average length: 50 SN average first fragment length: 50 SN average last fragment length: 0 SN maximum length: 51 SN maximum first fragment length: 0 SN maximum last fragment length: 0 SN average quality: 34.3 SN insert size average: 0.0 SN insert size standard deviation: 0.0 SN inward oriented pairs: 0 SN outward oriented pairs: 0 SN pairs with other orientation: 0 SN pairs on different chromosomes: 0 SN percentage of properly paired reads (%): 0.0 # First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. # Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. GCF 0.75 8255 GCF 1.76 5346 GCF 2.26 4700 GCF 3.02 4564 GCF 3.77 5617 GCF 4.27 5955 GCF 4.77 6053 GCF 5.28 6163 GCF 5.78 8402 GCF 6.28 8837 GCF 6.78 8871 GCF 7.29 8990 GCF 7.79 14958 GCF 8.29 16047 GCF 8.79 16121 GCF 9.30 16205 GCF 9.80 30052 GCF 10.30 32152 GCF 10.80 32547 GCF 11.31 32717 GCF 11.81 58946 GCF 12.31 62486 GCF 12.81 63284 GCF 13.32 63548 GCF 13.82 101546 GCF 14.32 104944 GCF 14.82 107585 GCF 15.33 108404 GCF 15.83 158688 GCF 16.33 162860 GCF 16.83 166773 GCF 17.34 167390 GCF 17.84 219702 GCF 18.34 224790 GCF 18.84 228145 GCF 19.35 229833 GCF 19.85 281314 GCF 20.35 286174 GCF 20.85 289141 GCF 21.36 316799 GCF 21.86 327248 GCF 22.36 331224 GCF 22.86 333000 GCF 23.37 349319 GCF 23.87 357811 GCF 24.37 360044 GCF 24.87 361316 GCF 25.38 359576 GCF 25.88 362807 GCF 26.38 363625 GCF 26.88 363620 GCF 27.39 352819 GCF 27.89 349310 GCF 28.39 348414 GCF 28.89 348286 GCF 29.40 327503 GCF 29.90 320685 GCF 30.40 318252 GCF 30.90 317927 GCF 31.41 288962 GCF 31.91 281003 GCF 32.66 277599 GCF 33.42 244663 GCF 33.92 235555 GCF 34.42 235412 GCF 34.92 231772 GCF 35.43 200543 GCF 35.93 190077 GCF 36.43 189702 GCF 36.93 185545 GCF 37.44 156845 GCF 37.94 146852 GCF 38.44 146026 GCF 38.94 141805 GCF 39.45 115928 GCF 39.95 107292 GCF 40.45 106267 GCF 40.95 85489 GCF 41.46 83156 GCF 41.96 76344 GCF 42.46 75536 GCF 42.96 62093 GCF 43.47 61724 GCF 43.97 55587 GCF 44.47 55210 GCF 44.97 44657 GCF 45.48 44407 GCF 45.98 39975 GCF 46.48 39877 GCF 46.98 32731 GCF 47.49 32604 GCF 47.99 30317 GCF 48.49 30283 GCF 49.25 24848 GCF 50.25 22565 GCF 51.01 18892 GCF 51.51 18832 GCF 52.01 15819 GCF 52.51 15571 GCF 53.02 11315 GCF 53.52 10798 GCF 54.02 8978 GCF 54.52 8232 GCF 55.03 6138 GCF 55.53 5534 GCF 56.03 4478 GCF 56.53 4240 GCF 57.04 3055 GCF 57.54 2812 GCF 58.04 2279 GCF 58.54 2063 GCF 59.05 1366 GCF 59.55 1287 GCF 60.05 1070 GCF 60.55 822 GCF 61.06 766 GCF 61.56 741 GCF 62.06 611 GCF 62.56 430 GCF 63.07 362 GCF 63.57 355 GCF 64.07 277 GCF 64.57 224 GCF 65.08 200 GCF 65.58 204 GCF 66.08 193 GCF 66.83 158 GCF 67.59 138 GCF 68.09 97 GCF 68.59 69 GCF 69.10 64 GCF 69.60 56 GCF 70.10 43 GCF 70.60 34 GCF 71.11 38 GCF 71.61 37 GCF 72.11 29 GCF 72.61 28 GCF 73.12 22 GCF 73.62 20 GCF 74.12 15 GCF 74.62 12 GCF 75.13 11 GCF 75.63 10 GCF 76.13 9 GCF 76.88 5 GCF 77.64 4 GCF 78.14 5 GCF 78.89 4 GCF 79.65 3 GCF 80.15 1 GCF 80.90 0 GCF 81.66 1 GCF 82.66 2 GCF 83.67 3 GCF 84.92 1 GCF 86.93 3 GCF 88.19 2 GCF 89.20 3 GCF 90.70 1 GCF 91.71 0 GCF 92.96 2 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] GCC 1 41.29 30.72 12.08 15.90 0.33 0.00 GCC 2 45.35 28.93 9.10 16.63 0.00 0.00 GCC 3 51.04 24.85 6.40 17.71 0.00 0.00 GCC 4 45.59 27.55 6.16 20.71 0.00 0.00 GCC 5 40.79 27.47 2.98 28.75 0.00 0.00 GCC 6 42.01 24.37 2.98 30.65 0.00 0.00 GCC 7 43.77 24.57 3.04 28.62 0.00 0.00 GCC 8 43.49 23.67 3.15 29.69 0.00 0.00 GCC 9 43.31 24.59 3.27 28.83 0.00 0.00 GCC 10 42.53 25.05 3.35 29.06 0.00 0.00 GCC 11 42.59 24.87 3.54 29.01 0.07 0.00 GCC 12 42.74 24.74 3.50 29.01 0.00 0.00 GCC 13 42.76 24.87 3.55 28.81 0.00 0.00 GCC 14 43.07 25.16 3.51 28.27 0.00 0.00 GCC 15 42.77 24.93 3.62 28.68 0.00 0.00 GCC 16 42.61 24.78 3.44 29.18 0.00 0.00 GCC 17 42.10 24.72 3.43 29.76 0.00 0.00 GCC 18 42.60 24.07 3.46 29.87 0.00 0.00 GCC 19 42.29 24.53 3.45 29.73 0.00 0.00 GCC 20 43.81 23.77 3.50 28.91 0.00 0.00 GCC 21 44.14 23.56 3.57 28.73 0.00 0.00 GCC 22 44.27 23.46 3.58 28.69 0.00 0.00 GCC 23 43.90 23.70 3.54 28.86 0.00 0.00 GCC 24 43.91 23.40 3.56 29.13 0.00 0.00 GCC 25 43.79 23.66 3.52 29.02 0.00 0.00 GCC 26 43.71 23.44 3.57 29.28 0.00 0.00 GCC 27 43.65 23.38 3.56 29.40 0.00 0.00 GCC 28 44.10 23.01 3.45 29.43 0.00 0.00 GCC 29 44.16 23.13 3.37 29.35 0.00 0.00 GCC 30 45.06 22.12 3.33 29.49 0.00 0.00 GCC 31 45.30 21.97 3.45 29.28 0.00 0.00 GCC 32 45.59 22.01 3.40 29.00 0.00 0.00 GCC 33 46.11 21.87 3.41 28.61 0.00 0.00 GCC 34 46.21 21.74 3.40 28.64 0.00 0.00 GCC 35 46.08 22.01 3.41 28.50 0.00 0.00 GCC 36 46.34 21.55 3.40 28.71 0.00 0.00 GCC 37 46.47 21.60 3.50 28.42 0.00 0.00 GCC 38 46.22 21.56 3.38 28.85 0.00 0.00 GCC 39 46.52 21.60 3.42 28.46 0.00 0.00 GCC 40 46.47 21.41 3.38 28.73 0.00 0.00 GCC 41 46.57 21.36 3.50 28.57 0.00 0.00 GCC 42 46.52 21.26 3.46 28.76 0.00 0.00 GCC 43 46.68 21.45 3.49 28.38 0.00 0.00 GCC 44 46.77 21.45 3.42 28.36 0.00 0.00 GCC 45 46.76 21.37 3.45 28.43 0.00 0.00 GCC 46 47.08 21.25 3.41 28.26 0.00 0.00 GCC 47 46.88 21.37 3.44 28.30 0.00 0.00 GCC 48 47.43 20.98 3.46 28.14 0.00 0.00 GCC 49 48.77 18.96 3.48 28.78 4.92 0.00 GCC 50 52.70 16.02 3.32 27.97 0.00 0.00 GCC 51 63.66 1.73 3.82 30.79 0.00 0.00 # ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] # ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] LBC 1 41.29 30.72 12.08 15.90 0.33 0.00 LBC 2 45.35 28.93 9.10 16.63 0.00 0.00 LBC 3 51.04 24.85 6.40 17.71 0.00 0.00 LBC 4 45.59 27.55 6.16 20.71 0.00 0.00 LBC 5 40.79 27.47 2.98 28.75 0.00 0.00 LBC 6 42.01 24.37 2.98 30.65 0.00 0.00 LBC 7 43.77 24.57 3.04 28.62 0.00 0.00 LBC 8 43.49 23.67 3.15 29.69 0.00 0.00 LBC 9 43.31 24.59 3.27 28.83 0.00 0.00 LBC 10 42.53 25.05 3.35 29.06 0.00 0.00 LBC 11 42.59 24.87 3.54 29.01 0.07 0.00 LBC 12 42.74 24.74 3.50 29.01 0.00 0.00 LBC 13 42.76 24.87 3.55 28.81 0.00 0.00 LBC 14 43.07 25.16 3.51 28.27 0.00 0.00 LBC 15 42.77 24.93 3.62 28.68 0.00 0.00 LBC 16 42.61 24.78 3.44 29.18 0.00 0.00 LBC 17 42.10 24.72 3.43 29.76 0.00 0.00 LBC 18 42.60 24.07 3.46 29.87 0.00 0.00 LBC 19 42.29 24.53 3.45 29.73 0.00 0.00 LBC 20 43.81 23.77 3.50 28.91 0.00 0.00 LBC 21 44.14 23.56 3.57 28.73 0.00 0.00 LBC 22 44.27 23.46 3.58 28.69 0.00 0.00 LBC 23 43.90 23.70 3.54 28.86 0.00 0.00 LBC 24 43.91 23.40 3.56 29.13 0.00 0.00 LBC 25 43.79 23.66 3.52 29.02 0.00 0.00 LBC 26 43.71 23.44 3.57 29.28 0.00 0.00 LBC 27 43.65 23.38 3.56 29.40 0.00 0.00 LBC 28 44.10 23.01 3.45 29.43 0.00 0.00 LBC 29 44.16 23.13 3.37 29.35 0.00 0.00 LBC 30 45.06 22.12 3.33 29.49 0.00 0.00 LBC 31 45.30 21.97 3.45 29.28 0.00 0.00 LBC 32 45.59 22.01 3.40 29.00 0.00 0.00 LBC 33 46.11 21.87 3.41 28.61 0.00 0.00 LBC 34 46.21 21.74 3.40 28.64 0.00 0.00 LBC 35 46.08 22.01 3.41 28.50 0.00 0.00 LBC 36 46.34 21.55 3.40 28.71 0.00 0.00 LBC 37 46.47 21.60 3.50 28.42 0.00 0.00 LBC 38 46.22 21.56 3.38 28.85 0.00 0.00 LBC 39 46.52 21.60 3.42 28.46 0.00 0.00 LBC 40 46.47 21.41 3.38 28.73 0.00 0.00 LBC 41 46.57 21.36 3.50 28.57 0.00 0.00 LBC 42 46.52 21.26 3.46 28.76 0.00 0.00 LBC 43 46.68 21.45 3.49 28.38 0.00 0.00 LBC 44 46.77 21.45 3.42 28.36 0.00 0.00 LBC 45 46.76 21.37 3.45 28.43 0.00 0.00 LBC 46 47.08 21.25 3.41 28.26 0.00 0.00 LBC 47 46.88 21.37 3.44 28.30 0.00 0.00 LBC 48 47.43 20.98 3.46 28.14 0.00 0.00 LBC 49 48.77 18.96 3.48 28.78 4.92 0.00 LBC 50 52.70 16.02 3.32 27.97 0.00 0.00 LBC 51 63.66 1.73 3.82 30.79 0.00 0.00 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count RL 36 6997 RL 37 7544 RL 38 8122 RL 39 8761 RL 40 9713 RL 41 10558 RL 42 11045 RL 43 13019 RL 44 15192 RL 45 21591 RL 46 38490 RL 47 56327 RL 48 165621 RL 49 283579 RL 50 798676 RL 51 2342452 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions ID 1 16833 30900 ID 2 4060 7385 ID 3 904 1535 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) IC 2 0 10 0 9 IC 3 0 43 0 35 IC 4 0 65 0 69 IC 5 0 109 0 179 IC 6 0 185 0 189 IC 7 0 136 0 167 IC 8 0 123 0 195 IC 9 0 195 0 162 IC 10 0 97 0 174 IC 11 0 119 0 165 IC 12 0 161 0 160 IC 13 0 163 0 132 IC 14 0 117 0 165 IC 15 0 117 0 198 IC 16 0 161 0 162 IC 17 0 116 0 132 IC 18 0 106 0 164 IC 19 0 89 0 167 IC 20 0 87 0 153 IC 21 0 83 0 133 IC 22 0 40 0 52 IC 23 0 26 0 27 IC 24 0 22 0 44 IC 25 0 42 0 35 IC 26 0 30 0 49 IC 27 0 38 0 74 IC 28 0 80 0 158 IC 29 0 123 0 337 IC 30 0 228 0 2152 IC 31 0 995 0 2164 IC 32 0 1066 0 2101 IC 33 0 1295 0 2221 IC 34 0 1172 0 2370 IC 35 0 1246 0 2196 IC 36 0 1148 0 2354 IC 37 0 1162 0 2204 IC 38 0 1107 0 2203 IC 39 0 1075 0 2192 IC 40 0 1039 0 2188 IC 41 0 1212 0 2153 IC 42 0 1179 0 2167 IC 43 0 1200 0 2116 IC 44 0 1247 0 1900 IC 45 0 1090 0 1580 IC 46 0 935 0 1279 IC 47 0 409 0 439 IC 48 0 202 0 117 IC 49 0 99 0 38 IC 50 0 8 0 0 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. COV [1-1] 1 37981983 COV [2-2] 2 11730699 COV [3-3] 3 5467524 COV [4-4] 4 3036612 COV [5-5] 5 1872418 COV [6-6] 6 1227215 COV [7-7] 7 854748 COV [8-8] 8 618081 COV [9-9] 9 456538 COV [10-10] 10 355331 COV [11-11] 11 277480 COV [12-12] 12 222358 COV [13-13] 13 182669 COV [14-14] 14 153299 COV [15-15] 15 131177 COV [16-16] 16 108404 COV [17-17] 17 96252 COV [18-18] 18 85066 COV [19-19] 19 72675 COV [20-20] 20 65607 COV [21-21] 21 55940 COV [22-22] 22 51255 COV [23-23] 23 46232 COV [24-24] 24 41261 COV [25-25] 25 36601 COV [26-26] 26 33315 COV [27-27] 27 31173 COV [28-28] 28 28742 COV [29-29] 29 26379 COV [30-30] 30 24414 COV [31-31] 31 23202 COV [32-32] 32 21339 COV [33-33] 33 18946 COV [34-34] 34 18265 COV [35-35] 35 17256 COV [36-36] 36 16722 COV [37-37] 37 14686 COV [38-38] 38 13862 COV [39-39] 39 13509 COV [40-40] 40 12661 COV [41-41] 41 11497 COV [42-42] 42 11094 COV [43-43] 43 10683 COV [44-44] 44 9463 COV [45-45] 45 9518 COV [46-46] 46 9106 COV [47-47] 47 7994 COV [48-48] 48 8195 COV [49-49] 49 7439 COV [50-50] 50 7062 COV [51-51] 51 6957 COV [52-52] 52 6294 COV [53-53] 53 6010 COV [54-54] 54 5727 COV [55-55] 55 5579 COV [56-56] 56 5413 COV [57-57] 57 4988 COV [58-58] 58 4867 COV [59-59] 59 4276 COV [60-60] 60 4199 COV [61-61] 61 4534 COV [62-62] 62 4259 COV [63-63] 63 3780 COV [64-64] 64 3899 COV [65-65] 65 3628 COV [66-66] 66 3260 COV [67-67] 67 3097 COV [68-68] 68 3320 COV [69-69] 69 2940 COV [70-70] 70 2929 COV [71-71] 71 2951 COV [72-72] 72 2747 COV [73-73] 73 2462 COV [74-74] 74 2586 COV [75-75] 75 2502 COV [76-76] 76 2540 COV [77-77] 77 2223 COV [78-78] 78 2529 COV [79-79] 79 2156 COV [80-80] 80 2015 COV [81-81] 81 2160 COV [82-82] 82 1835 COV [83-83] 83 2117 COV [84-84] 84 2260 COV [85-85] 85 1869 COV [86-86] 86 1829 COV [87-87] 87 1858 COV [88-88] 88 1778 COV [89-89] 89 1770 COV [90-90] 90 1650 COV [91-91] 91 1478 COV [92-92] 92 1472 COV [93-93] 93 1626 COV [94-94] 94 1686 COV [95-95] 95 1574 COV [96-96] 96 1318 COV [97-97] 97 1293 COV [98-98] 98 1377 COV [99-99] 99 1259 COV [100-100] 100 1439 COV [101-101] 101 1455 COV [102-102] 102 1141 COV [103-103] 103 1274 COV [104-104] 104 1114 COV [105-105] 105 995 COV [106-106] 106 948 COV [107-107] 107 974 COV [108-108] 108 908 COV [109-109] 109 828 COV [110-110] 110 980 COV [111-111] 111 861 COV [112-112] 112 657 COV [113-113] 113 902 COV [114-114] 114 985 COV [115-115] 115 766 COV [116-116] 116 727 COV [117-117] 117 768 COV [118-118] 118 718 COV [119-119] 119 598 COV [120-120] 120 824 COV [121-121] 121 627 COV [122-122] 122 724 COV [123-123] 123 651 COV [124-124] 124 684 COV [125-125] 125 706 COV [126-126] 126 661 COV [127-127] 127 599 COV [128-128] 128 645 COV [129-129] 129 636 COV [130-130] 130 658 COV [131-131] 131 448 COV [132-132] 132 406 COV [133-133] 133 372 COV [134-134] 134 428 COV [135-135] 135 611 COV [136-136] 136 569 COV [137-137] 137 428 COV [138-138] 138 456 COV [139-139] 139 619 COV [140-140] 140 488 COV [141-141] 141 488 COV [142-142] 142 679 COV [143-143] 143 453 COV [144-144] 144 476 COV [145-145] 145 560 COV [146-146] 146 602 COV [147-147] 147 561 COV [148-148] 148 386 COV [149-149] 149 415 COV [150-150] 150 376 COV [151-151] 151 418 COV [152-152] 152 349 COV [153-153] 153 459 COV [154-154] 154 371 COV [155-155] 155 331 COV [156-156] 156 412 COV [157-157] 157 289 COV [158-158] 158 350 COV [159-159] 159 352 COV [160-160] 160 350 COV [161-161] 161 351 COV [162-162] 162 310 COV [163-163] 163 377 COV [164-164] 164 344 COV [165-165] 165 338 COV [166-166] 166 283 COV [167-167] 167 345 COV [168-168] 168 327 COV [169-169] 169 265 COV [170-170] 170 341 COV [171-171] 171 403 COV [172-172] 172 206 COV [173-173] 173 266 COV [174-174] 174 235 COV [175-175] 175 337 COV [176-176] 176 261 COV [177-177] 177 240 COV [178-178] 178 266 COV [179-179] 179 220 COV [180-180] 180 254 COV [181-181] 181 339 COV [182-182] 182 225 COV [183-183] 183 310 COV [184-184] 184 190 COV [185-185] 185 293 COV [186-186] 186 168 COV [187-187] 187 186 COV [188-188] 188 232 COV [189-189] 189 188 COV [190-190] 190 152 COV [191-191] 191 195 COV [192-192] 192 253 COV [193-193] 193 190 COV [194-194] 194 258 COV [195-195] 195 216 COV [196-196] 196 196 COV [197-197] 197 222 COV [198-198] 198 155 COV [199-199] 199 191 COV [200-200] 200 247 COV [201-201] 201 151 COV [202-202] 202 137 COV [203-203] 203 83 COV [204-204] 204 156 COV [205-205] 205 203 COV [206-206] 206 192 COV [207-207] 207 159 COV [208-208] 208 131 COV [209-209] 209 177 COV [210-210] 210 173 COV [211-211] 211 139 COV [212-212] 212 140 COV [213-213] 213 194 COV [214-214] 214 108 COV [215-215] 215 105 COV [216-216] 216 139 COV [217-217] 217 186 COV [218-218] 218 211 COV [219-219] 219 153 COV [220-220] 220 183 COV [221-221] 221 144 COV [222-222] 222 145 COV [223-223] 223 134 COV [224-224] 224 130 COV [225-225] 225 96 COV [226-226] 226 121 COV [227-227] 227 134 COV [228-228] 228 94 COV [229-229] 229 113 COV [230-230] 230 160 COV [231-231] 231 126 COV [232-232] 232 139 COV [233-233] 233 204 COV [234-234] 234 115 COV [235-235] 235 170 COV [236-236] 236 138 COV [237-237] 237 252 COV [238-238] 238 92 COV [239-239] 239 178 COV [240-240] 240 167 COV [241-241] 241 168 COV [242-242] 242 102 COV [243-243] 243 133 COV [244-244] 244 112 COV [245-245] 245 188 COV [246-246] 246 94 COV [247-247] 247 164 COV [248-248] 248 134 COV [249-249] 249 120 COV [250-250] 250 95 COV [251-251] 251 105 COV [252-252] 252 79 COV [253-253] 253 91 COV [254-254] 254 99 COV [255-255] 255 106 COV [256-256] 256 63 COV [257-257] 257 83 COV [258-258] 258 120 COV [259-259] 259 105 COV [260-260] 260 150 COV [261-261] 261 84 COV [262-262] 262 62 COV [263-263] 263 57 COV [264-264] 264 108 COV [265-265] 265 87 COV [266-266] 266 81 COV [267-267] 267 62 COV [268-268] 268 62 COV [269-269] 269 98 COV [270-270] 270 100 COV [271-271] 271 156 COV [272-272] 272 92 COV [273-273] 273 118 COV [274-274] 274 60 COV [275-275] 275 114 COV [276-276] 276 62 COV [277-277] 277 96 COV [278-278] 278 62 COV [279-279] 279 105 COV [280-280] 280 117 COV [281-281] 281 44 COV [282-282] 282 93 COV [283-283] 283 49 COV [284-284] 284 87 COV [285-285] 285 116 COV [286-286] 286 54 COV [287-287] 287 49 COV [288-288] 288 33 COV [289-289] 289 63 COV [290-290] 290 50 COV [291-291] 291 52 COV [292-292] 292 124 COV [293-293] 293 97 COV [294-294] 294 70 COV [295-295] 295 70 COV [296-296] 296 102 COV [297-297] 297 122 COV [298-298] 298 63 COV [299-299] 299 55 COV [300-300] 300 46 COV [301-301] 301 51 COV [302-302] 302 55 COV [303-303] 303 68 COV [304-304] 304 67 COV [305-305] 305 47 COV [306-306] 306 49 COV [307-307] 307 44 COV [308-308] 308 63 COV [309-309] 309 49 COV [310-310] 310 42 COV [311-311] 311 29 COV [312-312] 312 19 COV [313-313] 313 36 COV [314-314] 314 17 COV [315-315] 315 49 COV [316-316] 316 22 COV [317-317] 317 22 COV [318-318] 318 44 COV [319-319] 319 90 COV [320-320] 320 22 COV [321-321] 321 24 COV [322-322] 322 17 COV [323-323] 323 22 COV [324-324] 324 31 COV [325-325] 325 83 COV [326-326] 326 34 COV [327-327] 327 20 COV [328-328] 328 46 COV [329-329] 329 34 COV [330-330] 330 57 COV [331-331] 331 43 COV [332-332] 332 69 COV [333-333] 333 60 COV [334-334] 334 59 COV [335-335] 335 53 COV [336-336] 336 23 COV [337-337] 337 27 COV [338-338] 338 81 COV [339-339] 339 58 COV [340-340] 340 47 COV [341-341] 341 21 COV [342-342] 342 23 COV [343-343] 343 61 COV [344-344] 344 13 COV [345-345] 345 35 COV [346-346] 346 23 COV [347-347] 347 48 COV [348-348] 348 43 COV [349-349] 349 15 COV [350-350] 350 31 COV [351-351] 351 43 COV [352-352] 352 66 COV [353-353] 353 107 COV [354-354] 354 46 COV [355-355] 355 54 COV [356-356] 356 45 COV [357-357] 357 14 COV [358-358] 358 11 COV [359-359] 359 26 COV [360-360] 360 38 COV [361-361] 361 55 COV [362-362] 362 20 COV [363-363] 363 12 COV [364-364] 364 13 COV [365-365] 365 15 COV [366-366] 366 23 COV [367-367] 367 95 COV [368-368] 368 27 COV [369-369] 369 21 COV [370-370] 370 62 COV [371-371] 371 21 COV [372-372] 372 70 COV [373-373] 373 37 COV [374-374] 374 15 COV [375-375] 375 17 COV [376-376] 376 23 COV [377-377] 377 48 COV [378-378] 378 32 COV [379-379] 379 66 COV [380-380] 380 15 COV [381-381] 381 51 COV [382-382] 382 33 COV [383-383] 383 21 COV [384-384] 384 20 COV [385-385] 385 17 COV [386-386] 386 15 COV [387-387] 387 20 COV [388-388] 388 70 COV [389-389] 389 25 COV [390-390] 390 32 COV [391-391] 391 18 COV [392-392] 392 14 COV [393-393] 393 38 COV [394-394] 394 10 COV [395-395] 395 18 COV [396-396] 396 20 COV [397-397] 397 9 COV [398-398] 398 20 COV [399-399] 399 27 COV [400-400] 400 37 COV [401-401] 401 20 COV [402-402] 402 25 COV [403-403] 403 40 COV [404-404] 404 29 COV [405-405] 405 9 COV [406-406] 406 17 COV [407-407] 407 44 COV [408-408] 408 13 COV [409-409] 409 23 COV [410-410] 410 20 COV [411-411] 411 39 COV [412-412] 412 4 COV [413-413] 413 17 COV [414-414] 414 31 COV [415-415] 415 51 COV [416-416] 416 20 COV [417-417] 417 8 COV [418-418] 418 3 COV [419-419] 419 11 COV [420-420] 420 5 COV [421-421] 421 28 COV [422-422] 422 3 COV [423-423] 423 9 COV [424-424] 424 12 COV [425-425] 425 7 COV [426-426] 426 6 COV [427-427] 427 7 COV [428-428] 428 12 COV [429-429] 429 10 COV [430-430] 430 11 COV [431-431] 431 12 COV [432-432] 432 11 COV [433-433] 433 7 COV [434-434] 434 11 COV [435-435] 435 38 COV [436-436] 436 11 COV [437-437] 437 9 COV [438-438] 438 44 COV [439-439] 439 5 COV [440-440] 440 13 COV [441-441] 441 8 COV [442-442] 442 16 COV [443-443] 443 7 COV [444-444] 444 15 COV [445-445] 445 7 COV [446-446] 446 10 COV [447-447] 447 10 COV [448-448] 448 17 COV [449-449] 449 13 COV [450-450] 450 33 COV [451-451] 451 15 COV [452-452] 452 9 COV [453-453] 453 6 COV [454-454] 454 9 COV [455-455] 455 9 COV [456-456] 456 31 COV [457-457] 457 6 COV [458-458] 458 6 COV [459-459] 459 6 COV [460-460] 460 4 COV [461-461] 461 18 COV [462-462] 462 7 COV [463-463] 463 15 COV [464-464] 464 9 COV [465-465] 465 13 COV [466-466] 466 10 COV [467-467] 467 7 COV [468-468] 468 5 COV [469-469] 469 5 COV [470-470] 470 19 COV [471-471] 471 18 COV [472-472] 472 14 COV [473-473] 473 6 COV [474-474] 474 50 COV [475-475] 475 8 COV [476-476] 476 12 COV [477-477] 477 4 COV [478-478] 478 4 COV [479-479] 479 14 COV [480-480] 480 34 COV [481-481] 481 10 COV [482-482] 482 10 COV [483-483] 483 15 COV [484-484] 484 45 COV [485-485] 485 36 COV [486-486] 486 6 COV [487-487] 487 22 COV [488-488] 488 15 COV [489-489] 489 7 COV [490-490] 490 10 COV [491-491] 491 49 COV [492-492] 492 9 COV [493-493] 493 11 COV [494-494] 494 7 COV [495-495] 495 11 COV [496-496] 496 2 COV [497-497] 497 5 COV [498-498] 498 3 COV [499-499] 499 12 COV [500-500] 500 6 COV [501-501] 501 4 COV [502-502] 502 4 COV [503-503] 503 9 COV [504-504] 504 15 COV [505-505] 505 3 COV [506-506] 506 41 COV [507-507] 507 7 COV [508-508] 508 7 COV [509-509] 509 9 COV [510-510] 510 8 COV [511-511] 511 9 COV [512-512] 512 7 COV [513-513] 513 9 COV [514-514] 514 9 COV [515-515] 515 7 COV [516-516] 516 19 COV [517-517] 517 42 COV [518-518] 518 29 COV [519-519] 519 54 COV [520-520] 520 17 COV [521-521] 521 15 COV [522-522] 522 29 COV [523-523] 523 12 COV [524-524] 524 6 COV [525-525] 525 4 COV [526-526] 526 6 COV [527-527] 527 1 COV [528-528] 528 8 COV [529-529] 529 12 COV [530-530] 530 1 COV [531-531] 531 10 COV [532-532] 532 11 COV [533-533] 533 11 COV [534-534] 534 5 COV [535-535] 535 17 COV [536-536] 536 8 COV [537-537] 537 5 COV [538-538] 538 5 COV [539-539] 539 23 COV [540-540] 540 10 COV [541-541] 541 6 COV [542-542] 542 3 COV [543-543] 543 8 COV [544-544] 544 11 COV [545-545] 545 9 COV [546-546] 546 8 COV [547-547] 547 44 COV [548-548] 548 6 COV [549-549] 549 3 COV [550-550] 550 2 COV [551-551] 551 11 COV [552-552] 552 9 COV [553-553] 553 15 COV [554-554] 554 12 COV [555-555] 555 5 COV [556-556] 556 7 COV [558-558] 558 11 COV [559-559] 559 5 COV [560-560] 560 7 COV [561-561] 561 39 COV [562-562] 562 23 COV [563-563] 563 9 COV [564-564] 564 5 COV [565-565] 565 26 COV [566-566] 566 7 COV [567-567] 567 5 COV [568-568] 568 34 COV [569-569] 569 7 COV [570-570] 570 6 COV [571-571] 571 13 COV [572-572] 572 5 COV [573-573] 573 6 COV [574-574] 574 2 COV [575-575] 575 7 COV [577-577] 577 3 COV [578-578] 578 5 COV [579-579] 579 12 COV [580-580] 580 37 COV [581-581] 581 5 COV [582-582] 582 1 COV [583-583] 583 6 COV [584-584] 584 6 COV [585-585] 585 6 COV [586-586] 586 31 COV [587-587] 587 19 COV [588-588] 588 22 COV [589-589] 589 6 COV [590-590] 590 4 COV [591-591] 591 4 COV [593-593] 593 10 COV [594-594] 594 4 COV [595-595] 595 3 COV [596-596] 596 7 COV [597-597] 597 2 COV [598-598] 598 8 COV [599-599] 599 5 COV [600-600] 600 5 COV [601-601] 601 27 COV [602-602] 602 14 COV [603-603] 603 2 COV [604-604] 604 12 COV [605-605] 605 16 COV [606-606] 606 15 COV [607-607] 607 3 COV [608-608] 608 29 COV [609-609] 609 4 COV [610-610] 610 3 COV [611-611] 611 16 COV [612-612] 612 3 COV [613-613] 613 2 COV [614-614] 614 5 COV [615-615] 615 3 COV [616-616] 616 2 COV [617-617] 617 13 COV [618-618] 618 2 COV [619-619] 619 3 COV [620-620] 620 6 COV [621-621] 621 4 COV [622-622] 622 3 COV [623-623] 623 1 COV [624-624] 624 5 COV [625-625] 625 4 COV [626-626] 626 2 COV [627-627] 627 7 COV [628-628] 628 2 COV [629-629] 629 7 COV [630-630] 630 10 COV [631-631] 631 3 COV [632-632] 632 6 COV [633-633] 633 1 COV [634-634] 634 6 COV [635-635] 635 4 COV [636-636] 636 8 COV [637-637] 637 3 COV [638-638] 638 4 COV [639-639] 639 4 COV [640-640] 640 12 COV [641-641] 641 4 COV [642-642] 642 13 COV [643-643] 643 8 COV [644-644] 644 4 COV [645-645] 645 2 COV [646-646] 646 1 COV [647-647] 647 1 COV [648-648] 648 4 COV [649-649] 649 8 COV [650-650] 650 8 COV [651-651] 651 26 COV [652-652] 652 9 COV [653-653] 653 6 COV [654-654] 654 3 COV [655-655] 655 4 COV [656-656] 656 5 COV [657-657] 657 4 COV [658-658] 658 3 COV [659-659] 659 4 COV [660-660] 660 3 COV [661-661] 661 5 COV [662-662] 662 8 COV [663-663] 663 8 COV [664-664] 664 7 COV [665-665] 665 21 COV [666-666] 666 11 COV [667-667] 667 13 COV [668-668] 668 2 COV [669-669] 669 5 COV [670-670] 670 22 COV [671-671] 671 8 COV [672-672] 672 4 COV [673-673] 673 2 COV [674-674] 674 5 COV [675-675] 675 16 COV [676-676] 676 3 COV [677-677] 677 11 COV [678-678] 678 13 COV [679-679] 679 19 COV [680-680] 680 8 COV [681-681] 681 6 COV [682-682] 682 3 COV [683-683] 683 14 COV [684-684] 684 17 COV [685-685] 685 7 COV [686-686] 686 10 COV [687-687] 687 3 COV [688-688] 688 32 COV [689-689] 689 7 COV [691-691] 691 2 COV [694-694] 694 2 COV [695-695] 695 3 COV [696-696] 696 2 COV [698-698] 698 1 COV [699-699] 699 1 COV [701-701] 701 1 COV [702-702] 702 1 COV [703-703] 703 1 COV [704-704] 704 2 COV [706-706] 706 3 COV [708-708] 708 5 COV [709-709] 709 2 COV [712-712] 712 4 COV [713-713] 713 9 COV [714-714] 714 5 COV [715-715] 715 23 COV [716-716] 716 8 COV [717-717] 717 16 COV [718-718] 718 2 COV [720-720] 720 1 COV [723-723] 723 1 COV [724-724] 724 1 COV [725-725] 725 1 COV [726-726] 726 3 COV [729-729] 729 2 COV [730-730] 730 2 COV [731-731] 731 2 COV [732-732] 732 1 COV [733-733] 733 2 COV [734-734] 734 1 COV [735-735] 735 1 COV [736-736] 736 2 COV [738-738] 738 3 COV [739-739] 739 2 COV [740-740] 740 3 COV [741-741] 741 1 COV [743-743] 743 1 COV [744-744] 744 1 COV [745-745] 745 2 COV [747-747] 747 1 COV [749-749] 749 2 COV [750-750] 750 2 COV [752-752] 752 1 COV [753-753] 753 2 COV [755-755] 755 1 COV [759-759] 759 1 COV [762-762] 762 2 COV [764-764] 764 1 COV [765-765] 765 1 COV [766-766] 766 1 COV [768-768] 768 2 COV [769-769] 769 1 COV [771-771] 771 1 COV [773-773] 773 1 COV [775-775] 775 1 COV [778-778] 778 1 COV [780-780] 780 1 COV [781-781] 781 1 COV [782-782] 782 2 COV [784-784] 784 1 COV [786-786] 786 2 COV [787-787] 787 1 COV [788-788] 788 1 COV [790-790] 790 1 COV [791-791] 791 1 COV [792-792] 792 2 COV [793-793] 793 1 COV [795-795] 795 1 COV [796-796] 796 3 COV [799-799] 799 13 COV [800-800] 800 67 COV [801-801] 801 9 COV [802-802] 802 1 COV [805-805] 805 3 COV [807-807] 807 3 COV [808-808] 808 6 COV [809-809] 809 5 COV [810-810] 810 4 COV [811-811] 811 1 COV [812-812] 812 1 COV [813-813] 813 4 COV [814-814] 814 1 COV [815-815] 815 3 COV [816-816] 816 3 COV [819-819] 819 1 COV [820-820] 820 1 COV [821-821] 821 1 COV [822-822] 822 2 COV [823-823] 823 1 COV [824-824] 824 2 COV [825-825] 825 1 COV [827-827] 827 3 COV [828-828] 828 1 COV [829-829] 829 3 COV [830-830] 830 2 COV [831-831] 831 8 COV [832-832] 832 2 COV [833-833] 833 7 COV [834-834] 834 3 COV [835-835] 835 1 COV [836-836] 836 14 COV [838-838] 838 6 COV [839-839] 839 4 COV [840-840] 840 7 COV [842-842] 842 3 COV [850-850] 850 1 COV [851-851] 851 1 COV [852-852] 852 1 COV [853-853] 853 2 COV [856-856] 856 2 COV [857-857] 857 1 COV [858-858] 858 1 COV [859-859] 859 1 COV [860-860] 860 3 COV [862-862] 862 2 COV [863-863] 863 2 COV [864-864] 864 12 COV [865-865] 865 20 COV [868-868] 868 1 COV [870-870] 870 1 COV [871-871] 871 1 COV [874-874] 874 1 COV [876-876] 876 1 COV [877-877] 877 1 COV [879-879] 879 36 COV [881-881] 881 4 COV [885-885] 885 1 COV [887-887] 887 1 COV [888-888] 888 1 COV [889-889] 889 1 COV [891-891] 891 1 COV [892-892] 892 1 COV [894-894] 894 1 COV [898-898] 898 1 COV [900-900] 900 2 COV [902-902] 902 1 COV [903-903] 903 1 COV [909-909] 909 1 COV [914-914] 914 1 COV [915-915] 915 1 COV [916-916] 916 1 COV [918-918] 918 1 COV [919-919] 919 1 COV [922-922] 922 1 COV [923-923] 923 1 COV [925-925] 925 1 COV [926-926] 926 1 COV [928-928] 928 1 COV [929-929] 929 1 COV [930-930] 930 1 COV [935-935] 935 1 COV [937-937] 937 2 COV [938-938] 938 1 COV [940-940] 940 1 COV [942-942] 942 2 COV [943-943] 943 1 COV [947-947] 947 2 COV [949-949] 949 1 COV [950-950] 950 4 COV [953-953] 953 1 COV [956-956] 956 1 COV [959-959] 959 2 COV [960-960] 960 1 COV [961-961] 961 1 COV [964-964] 964 2 COV [966-966] 966 1 COV [967-967] 967 2 COV [968-968] 968 1 COV [972-972] 972 4 COV [974-974] 974 2 COV [977-977] 977 1 COV [978-978] 978 1 COV [981-981] 981 1 COV [982-982] 982 1 COV [986-986] 986 1 COV [987-987] 987 1 COV [988-988] 988 1 COV [989-989] 989 1 COV [990-990] 990 1 COV [991-991] 991 2 COV [992-992] 992 5 COV [993-993] 993 19 COV [1000-1000] 1000 4 COV [1000<] 1000 522 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile GCD 0.0 0.004 0.000 0.000 0.000 0.000 0.000 GCD 1.0 0.006 17.225 17.225 17.225 17.225 17.225 GCD 1.2 0.007 0.013 0.013 0.013 0.013 0.013 GCD 2.0 0.013 0.002 0.002 0.002 0.407 0.407 GCD 3.0 0.017 0.145 0.145 0.145 0.675 0.675 GCD 4.0 0.020 0.632 0.632 0.632 1.965 1.965 GCD 5.0 0.037 0.002 0.002 0.007 0.145 0.603 GCD 6.0 0.046 0.002 0.002 0.300 0.632 1.275 GCD 7.0 0.057 0.127 0.127 0.257 0.642 1.565 GCD 8.0 0.076 0.002 0.002 0.005 0.097 0.482 GCD 9.0 0.100 0.007 0.010 0.040 0.120 0.222 GCD 10.0 0.146 0.002 0.005 0.030 0.110 0.200 GCD 11.0 0.201 0.005 0.013 0.060 0.095 0.282 GCD 12.0 0.255 0.002 0.007 0.030 0.095 0.192 GCD 13.0 0.347 0.005 0.007 0.027 0.102 0.210 GCD 14.0 0.462 0.005 0.007 0.013 0.043 0.090 GCD 15.0 0.611 0.007 0.013 0.027 0.065 0.108 GCD 16.0 0.859 0.005 0.010 0.018 0.040 0.093 GCD 17.0 1.282 0.010 0.015 0.027 0.060 0.165 GCD 18.0 2.039 0.007 0.018 0.035 0.068 0.140 GCD 19.0 3.293 0.013 0.020 0.038 0.070 0.147 GCD 20.0 5.572 0.013 0.023 0.043 0.080 0.160 GCD 21.0 9.277 0.018 0.027 0.052 0.105 0.198 GCD 22.0 15.436 0.020 0.035 0.062 0.120 0.225 GCD 23.0 23.764 0.025 0.043 0.080 0.153 0.270 GCD 24.0 35.000 0.027 0.050 0.095 0.183 0.310 GCD 25.0 47.516 0.030 0.058 0.110 0.207 0.360 GCD 26.0 59.742 0.035 0.065 0.127 0.245 0.403 GCD 27.0 70.663 0.035 0.068 0.132 0.252 0.428 GCD 28.0 79.504 0.035 0.070 0.142 0.278 0.482 GCD 29.0 85.814 0.035 0.070 0.145 0.275 0.463 GCD 30.0 90.324 0.035 0.070 0.142 0.287 0.495 GCD 31.0 93.477 0.035 0.070 0.142 0.275 0.490 GCD 32.0 95.531 0.032 0.070 0.150 0.303 0.527 GCD 33.0 96.980 0.030 0.072 0.145 0.295 0.543 GCD 34.0 97.898 0.032 0.070 0.142 0.287 0.572 GCD 35.0 98.532 0.027 0.065 0.140 0.280 0.540 GCD 36.0 98.958 0.027 0.075 0.183 0.393 0.637 GCD 37.0 99.265 0.020 0.047 0.130 0.270 0.540 GCD 38.0 99.479 0.018 0.062 0.153 0.287 0.605 GCD 39.0 99.603 0.055 0.108 0.233 0.505 1.055 GCD 40.0 99.716 0.030 0.065 0.140 0.257 0.520 GCD 41.0 99.791 0.030 0.075 0.185 0.543 0.697 GCD 42.0 99.854 0.007 0.055 0.135 0.350 0.570 GCD 43.0 99.889 0.010 0.035 0.125 0.468 0.762 GCD 44.0 99.917 0.032 0.100 0.282 0.565 0.890 GCD 45.0 99.941 0.018 0.070 0.172 0.440 0.620 GCD 46.0 99.956 0.010 0.050 0.108 0.190 0.605 GCD 47.0 99.976 0.047 0.203 0.375 0.933 1.100 GCD 48.0 99.987 0.007 0.007 0.228 0.442 0.920 GCD 49.0 99.991 0.292 0.292 0.292 2.525 2.525 GCD 50.0 99.994 1.242 1.242 1.242 5.823 5.823 GCD 51.0 99.996 0.162 0.162 0.162 0.162 0.162 GCD 53.0 99.998 3.368 3.368 3.368 3.368 3.368 GCD 54.0 100.000 0.268 0.268 0.268 0.268 0.268