# This file was produced by samtools stats (1.9+htslib-1.9) and can be plotted using plot-bamstats # This file contains statistics for all reads. # The command line was: stats sorted.bam # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) CHK d21f49e0 ce7cf9f6 e915fe15 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. SN raw total sequences: 3526260 SN filtered sequences: 0 SN sequences: 3526260 SN is sorted: 1 SN 1st fragments: 3526260 SN last fragments: 0 SN reads mapped: 3526260 SN reads mapped and paired: 0 # paired-end technology bit set + both mates mapped SN reads unmapped: 0 SN reads properly paired: 0 # proper-pair bit set SN reads paired: 0 # paired-end technology bit set SN reads duplicated: 0 # PCR or optical duplicate bit set SN reads MQ0: 1765452 # mapped and MQ=0 SN reads QC failed: 0 SN non-primary alignments: 0 SN total length: 176960088 # ignores clipping SN total first fragment length: 176960088 # ignores clipping SN total last fragment length: 0 # ignores clipping SN bases mapped: 176960088 # ignores clipping SN bases mapped (cigar): 175275063 # more accurate SN bases trimmed: 0 SN bases duplicated: 0 SN mismatches: 3116999 # from NM fields SN error rate: 1.778347e-02 # mismatches / bases mapped (cigar) SN average length: 50 SN average first fragment length: 50 SN average last fragment length: 0 SN maximum length: 51 SN maximum first fragment length: 0 SN maximum last fragment length: 0 SN average quality: 34.3 SN insert size average: 0.0 SN insert size standard deviation: 0.0 SN inward oriented pairs: 0 SN outward oriented pairs: 0 SN pairs with other orientation: 0 SN pairs on different chromosomes: 0 SN percentage of properly paired reads (%): 0.0 # First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. # Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. GCF 0.75 8549 GCF 1.76 5397 GCF 2.26 4562 GCF 3.02 4422 GCF 3.77 5204 GCF 4.27 5519 GCF 4.77 5622 GCF 5.28 5675 GCF 5.78 8159 GCF 6.28 8637 GCF 6.78 8687 GCF 7.29 8723 GCF 7.79 14622 GCF 8.29 15671 GCF 8.79 15753 GCF 9.30 15837 GCF 9.80 27319 GCF 10.30 29017 GCF 10.80 29333 GCF 11.31 29444 GCF 11.81 51422 GCF 12.31 54157 GCF 12.81 54723 GCF 13.32 54916 GCF 13.82 85132 GCF 14.32 87899 GCF 14.82 90309 GCF 15.33 90964 GCF 15.83 132890 GCF 16.33 136205 GCF 16.83 138831 GCF 17.34 139296 GCF 17.84 180850 GCF 18.34 184619 GCF 18.84 187234 GCF 19.35 188481 GCF 19.85 230655 GCF 20.35 234339 GCF 20.85 236418 GCF 21.36 261184 GCF 21.86 270447 GCF 22.36 273564 GCF 22.86 275353 GCF 23.37 293884 GCF 23.87 302401 GCF 24.37 305323 GCF 24.87 306595 GCF 25.38 310168 GCF 25.88 315006 GCF 26.38 316255 GCF 26.88 316736 GCF 27.39 314435 GCF 27.89 314349 GCF 28.39 314060 GCF 28.89 314083 GCF 29.40 301978 GCF 29.90 298269 GCF 30.40 297579 GCF 30.90 297343 GCF 31.41 277413 GCF 31.91 272351 GCF 32.66 270390 GCF 33.42 244632 GCF 33.92 238138 GCF 34.42 238085 GCF 34.92 235176 GCF 35.43 207473 GCF 35.93 198315 GCF 36.43 198114 GCF 36.93 195098 GCF 37.44 168637 GCF 37.94 159823 GCF 38.44 159204 GCF 38.94 155281 GCF 39.45 130759 GCF 39.95 122591 GCF 40.45 121797 GCF 40.95 99775 GCF 41.46 97453 GCF 41.96 90713 GCF 42.46 90053 GCF 42.96 74592 GCF 43.47 74167 GCF 43.97 67287 GCF 44.47 66742 GCF 44.97 54737 GCF 45.48 54425 GCF 45.98 49402 GCF 46.48 49271 GCF 46.98 40147 GCF 47.49 40076 GCF 47.99 36791 GCF 48.49 36713 GCF 49.25 28910 GCF 50.25 25206 GCF 51.01 20468 GCF 51.51 20401 GCF 52.01 17220 GCF 52.51 16925 GCF 53.02 12941 GCF 53.52 12616 GCF 54.02 10842 GCF 54.52 10302 GCF 55.03 7643 GCF 55.53 7150 GCF 56.03 5798 GCF 56.53 5583 GCF 57.04 3876 GCF 57.54 3675 GCF 58.04 2991 GCF 58.54 2833 GCF 59.05 1995 GCF 59.55 1938 GCF 60.05 1611 GCF 60.55 1195 GCF 61.06 1077 GCF 61.56 1034 GCF 62.06 854 GCF 62.56 650 GCF 63.07 570 GCF 63.57 558 GCF 64.07 442 GCF 64.57 329 GCF 65.08 298 GCF 65.58 301 GCF 66.08 272 GCF 66.83 210 GCF 67.59 194 GCF 68.09 155 GCF 68.59 119 GCF 69.10 117 GCF 69.60 99 GCF 70.10 71 GCF 70.60 48 GCF 71.11 45 GCF 71.61 38 GCF 72.11 29 GCF 72.86 19 GCF 73.62 20 GCF 74.37 18 GCF 75.13 17 GCF 75.63 12 GCF 76.13 9 GCF 76.63 7 GCF 77.14 5 GCF 77.89 1 GCF 79.15 3 GCF 80.40 2 GCF 81.91 3 GCF 83.17 4 GCF 83.67 3 GCF 84.17 4 GCF 85.18 3 GCF 86.93 2 GCF 88.94 0 GCF 90.20 1 GCF 90.95 2 GCF 91.96 3 GCF 92.71 2 GCF 93.22 3 GCF 94.22 2 GCF 95.48 1 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] GCC 1 39.73 31.29 12.95 16.03 0.33 0.00 GCC 2 44.07 29.18 10.11 16.64 0.00 0.00 GCC 3 50.22 25.00 7.13 17.65 0.00 0.00 GCC 4 45.35 26.97 7.02 20.66 0.00 0.00 GCC 5 40.12 27.63 3.62 28.63 0.00 0.00 GCC 6 41.66 24.14 3.70 30.50 0.00 0.00 GCC 7 43.27 24.30 3.83 28.60 0.00 0.00 GCC 8 43.18 23.52 3.93 29.38 0.00 0.00 GCC 9 43.07 24.07 4.15 28.72 0.00 0.00 GCC 10 42.17 24.80 4.25 28.78 0.00 0.00 GCC 11 42.26 24.58 4.50 28.66 0.07 0.00 GCC 12 42.31 24.61 4.48 28.60 0.00 0.00 GCC 13 42.40 24.72 4.45 28.42 0.00 0.00 GCC 14 42.70 24.85 4.44 28.01 0.00 0.00 GCC 15 42.37 24.69 4.59 28.35 0.00 0.00 GCC 16 42.08 24.66 4.34 28.92 0.00 0.00 GCC 17 41.76 24.48 4.30 29.46 0.00 0.00 GCC 18 42.10 23.80 4.44 29.66 0.00 0.00 GCC 19 41.93 24.43 4.39 29.25 0.00 0.00 GCC 20 43.10 23.73 4.48 28.69 0.00 0.00 GCC 21 43.57 23.54 4.57 28.32 0.00 0.00 GCC 22 43.67 23.49 4.61 28.23 0.00 0.00 GCC 23 43.22 23.71 4.47 28.60 0.00 0.00 GCC 24 43.37 23.36 4.53 28.74 0.00 0.00 GCC 25 43.15 23.66 4.44 28.76 0.00 0.00 GCC 26 43.03 23.45 4.55 28.96 0.00 0.00 GCC 27 43.05 23.36 4.55 29.04 0.00 0.00 GCC 28 43.44 23.08 4.42 29.06 0.00 0.00 GCC 29 43.51 23.11 4.33 29.05 0.00 0.00 GCC 30 44.42 22.18 4.29 29.11 0.00 0.00 GCC 31 44.53 22.07 4.35 29.05 0.00 0.00 GCC 32 44.77 22.13 4.35 28.75 0.00 0.00 GCC 33 45.14 22.09 4.37 28.40 0.00 0.00 GCC 34 45.27 21.97 4.37 28.38 0.00 0.00 GCC 35 45.08 22.22 4.35 28.34 0.00 0.00 GCC 36 45.39 21.69 4.37 28.55 0.00 0.00 GCC 37 45.47 21.66 4.54 28.33 0.00 0.00 GCC 38 45.12 21.83 4.34 28.71 0.00 0.00 GCC 39 45.61 21.67 4.37 28.36 0.00 0.00 GCC 40 45.62 21.55 4.33 28.50 0.00 0.00 GCC 41 45.54 21.58 4.44 28.44 0.00 0.00 GCC 42 45.54 21.43 4.42 28.62 0.00 0.00 GCC 43 45.59 21.54 4.47 28.41 0.00 0.00 GCC 44 45.86 21.56 4.38 28.20 0.00 0.00 GCC 45 45.87 21.39 4.40 28.34 0.00 0.00 GCC 46 46.14 21.29 4.37 28.20 0.00 0.00 GCC 47 45.92 21.50 4.40 28.18 0.00 0.00 GCC 48 46.48 21.05 4.41 28.06 0.00 0.00 GCC 49 47.79 19.08 4.41 28.72 4.92 0.00 GCC 50 51.57 16.19 4.27 27.97 0.00 0.00 GCC 51 62.33 1.85 4.91 30.91 0.00 0.00 # ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] # ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] LBC 1 39.73 31.29 12.95 16.03 0.33 0.00 LBC 2 44.07 29.18 10.11 16.64 0.00 0.00 LBC 3 50.22 25.00 7.13 17.65 0.00 0.00 LBC 4 45.35 26.97 7.02 20.66 0.00 0.00 LBC 5 40.12 27.63 3.62 28.63 0.00 0.00 LBC 6 41.66 24.14 3.70 30.50 0.00 0.00 LBC 7 43.27 24.30 3.83 28.60 0.00 0.00 LBC 8 43.18 23.52 3.93 29.38 0.00 0.00 LBC 9 43.07 24.07 4.15 28.72 0.00 0.00 LBC 10 42.17 24.80 4.25 28.78 0.00 0.00 LBC 11 42.26 24.58 4.50 28.66 0.07 0.00 LBC 12 42.31 24.61 4.48 28.60 0.00 0.00 LBC 13 42.40 24.72 4.45 28.42 0.00 0.00 LBC 14 42.70 24.85 4.44 28.01 0.00 0.00 LBC 15 42.37 24.69 4.59 28.35 0.00 0.00 LBC 16 42.08 24.66 4.34 28.92 0.00 0.00 LBC 17 41.76 24.48 4.30 29.46 0.00 0.00 LBC 18 42.10 23.80 4.44 29.66 0.00 0.00 LBC 19 41.93 24.43 4.39 29.25 0.00 0.00 LBC 20 43.10 23.73 4.48 28.69 0.00 0.00 LBC 21 43.57 23.54 4.57 28.32 0.00 0.00 LBC 22 43.67 23.49 4.61 28.23 0.00 0.00 LBC 23 43.22 23.71 4.47 28.60 0.00 0.00 LBC 24 43.37 23.36 4.53 28.74 0.00 0.00 LBC 25 43.15 23.66 4.44 28.76 0.00 0.00 LBC 26 43.03 23.45 4.55 28.96 0.00 0.00 LBC 27 43.05 23.36 4.55 29.04 0.00 0.00 LBC 28 43.44 23.08 4.42 29.06 0.00 0.00 LBC 29 43.51 23.11 4.33 29.05 0.00 0.00 LBC 30 44.42 22.18 4.29 29.11 0.00 0.00 LBC 31 44.53 22.07 4.35 29.05 0.00 0.00 LBC 32 44.77 22.13 4.35 28.75 0.00 0.00 LBC 33 45.14 22.09 4.37 28.40 0.00 0.00 LBC 34 45.27 21.97 4.37 28.38 0.00 0.00 LBC 35 45.08 22.22 4.35 28.34 0.00 0.00 LBC 36 45.39 21.69 4.37 28.55 0.00 0.00 LBC 37 45.47 21.66 4.54 28.33 0.00 0.00 LBC 38 45.12 21.83 4.34 28.71 0.00 0.00 LBC 39 45.61 21.67 4.37 28.36 0.00 0.00 LBC 40 45.62 21.55 4.33 28.50 0.00 0.00 LBC 41 45.54 21.58 4.44 28.44 0.00 0.00 LBC 42 45.54 21.43 4.42 28.62 0.00 0.00 LBC 43 45.59 21.54 4.47 28.41 0.00 0.00 LBC 44 45.86 21.56 4.38 28.20 0.00 0.00 LBC 45 45.87 21.39 4.40 28.34 0.00 0.00 LBC 46 46.14 21.29 4.37 28.20 0.00 0.00 LBC 47 45.92 21.50 4.40 28.18 0.00 0.00 LBC 48 46.48 21.05 4.41 28.06 0.00 0.00 LBC 49 47.79 19.08 4.41 28.72 4.92 0.00 LBC 50 51.57 16.19 4.27 27.97 0.00 0.00 LBC 51 62.33 1.85 4.91 30.91 0.00 0.00 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count RL 36 4743 RL 37 5175 RL 38 5564 RL 39 5982 RL 40 6570 RL 41 7440 RL 42 7909 RL 43 9622 RL 44 11615 RL 45 17506 RL 46 33602 RL 47 50638 RL 48 152676 RL 49 265257 RL 50 751189 RL 51 2190772 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions ID 1 16750 29616 ID 2 4000 6725 ID 3 840 1315 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) IC 2 0 25 0 20 IC 3 0 39 0 34 IC 4 0 88 0 85 IC 5 0 100 0 164 IC 6 0 207 0 175 IC 7 0 166 0 180 IC 8 0 145 0 230 IC 9 0 190 0 147 IC 10 0 112 0 206 IC 11 0 135 0 161 IC 12 0 212 0 159 IC 13 0 181 0 155 IC 14 0 134 0 136 IC 15 0 134 0 241 IC 16 0 261 0 151 IC 17 0 107 0 149 IC 18 0 124 0 191 IC 19 0 81 0 159 IC 20 0 95 0 120 IC 21 0 76 0 142 IC 22 0 33 0 57 IC 23 0 21 0 39 IC 24 0 30 0 45 IC 25 0 45 0 27 IC 26 0 29 0 52 IC 27 0 54 0 83 IC 28 0 66 0 153 IC 29 0 136 0 332 IC 30 0 217 0 1913 IC 31 0 1028 0 2013 IC 32 0 1029 0 2045 IC 33 0 1370 0 2064 IC 34 0 1159 0 2110 IC 35 0 1234 0 2169 IC 36 0 1180 0 2033 IC 37 0 1086 0 2163 IC 38 0 1106 0 2068 IC 39 0 944 0 2068 IC 40 0 1010 0 2083 IC 41 0 1134 0 1965 IC 42 0 1068 0 2050 IC 43 0 1100 0 1930 IC 44 0 1150 0 1783 IC 45 0 1086 0 1588 IC 46 0 968 0 1204 IC 47 0 377 0 463 IC 48 0 166 0 115 IC 49 0 139 0 36 IC 50 0 13 0 0 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. COV [1-1] 1 27956341 COV [2-2] 2 8988426 COV [3-3] 3 4360877 COV [4-4] 4 2533485 COV [5-5] 5 1636324 COV [6-6] 6 1134345 COV [7-7] 7 815479 COV [8-8] 8 610658 COV [9-9] 9 466629 COV [10-10] 10 374811 COV [11-11] 11 296631 COV [12-12] 12 242235 COV [13-13] 13 200653 COV [14-14] 14 167205 COV [15-15] 15 141305 COV [16-16] 16 121542 COV [17-17] 17 105563 COV [18-18] 18 93441 COV [19-19] 19 81519 COV [20-20] 20 70638 COV [21-21] 21 64209 COV [22-22] 22 56521 COV [23-23] 23 51603 COV [24-24] 24 44832 COV [25-25] 25 40821 COV [26-26] 26 38057 COV [27-27] 27 33440 COV [28-28] 28 31686 COV [29-29] 29 29637 COV [30-30] 30 26617 COV [31-31] 31 25725 COV [32-32] 32 22828 COV [33-33] 33 21332 COV [34-34] 34 20844 COV [35-35] 35 18452 COV [36-36] 36 17859 COV [37-37] 37 16498 COV [38-38] 38 15615 COV [39-39] 39 14336 COV [40-40] 40 13103 COV [41-41] 41 13257 COV [42-42] 42 11890 COV [43-43] 43 11231 COV [44-44] 44 10717 COV [45-45] 45 10074 COV [46-46] 46 10614 COV [47-47] 47 9149 COV [48-48] 48 9496 COV [49-49] 49 8166 COV [50-50] 50 7328 COV [51-51] 51 7158 COV [52-52] 52 6924 COV [53-53] 53 6715 COV [54-54] 54 6488 COV [55-55] 55 6269 COV [56-56] 56 6178 COV [57-57] 57 6187 COV [58-58] 58 5715 COV [59-59] 59 4881 COV [60-60] 60 5216 COV [61-61] 61 4767 COV [62-62] 62 4810 COV [63-63] 63 4626 COV [64-64] 64 4287 COV [65-65] 65 4250 COV [66-66] 66 4529 COV [67-67] 67 4522 COV [68-68] 68 3921 COV [69-69] 69 3615 COV [70-70] 70 3302 COV [71-71] 71 3150 COV [72-72] 72 3350 COV [73-73] 73 3217 COV [74-74] 74 3013 COV [75-75] 75 2985 COV [76-76] 76 2885 COV [77-77] 77 2793 COV [78-78] 78 2775 COV [79-79] 79 2706 COV [80-80] 80 2485 COV [81-81] 81 2511 COV [82-82] 82 2205 COV [83-83] 83 2248 COV [84-84] 84 1908 COV [85-85] 85 2161 COV [86-86] 86 2033 COV [87-87] 87 1927 COV [88-88] 88 1928 COV [89-89] 89 2229 COV [90-90] 90 1993 COV [91-91] 91 2042 COV [92-92] 92 1687 COV [93-93] 93 1612 COV [94-94] 94 1529 COV [95-95] 95 1535 COV [96-96] 96 1546 COV [97-97] 97 1570 COV [98-98] 98 1465 COV [99-99] 99 1451 COV [100-100] 100 1400 COV [101-101] 101 1462 COV [102-102] 102 1474 COV [103-103] 103 1273 COV [104-104] 104 1297 COV [105-105] 105 1190 COV [106-106] 106 1278 COV [107-107] 107 1295 COV [108-108] 108 1080 COV [109-109] 109 1256 COV [110-110] 110 1360 COV [111-111] 111 1209 COV [112-112] 112 1479 COV [113-113] 113 1213 COV [114-114] 114 1090 COV [115-115] 115 1155 COV [116-116] 116 945 COV [117-117] 117 1008 COV [118-118] 118 972 COV [119-119] 119 904 COV [120-120] 120 771 COV [121-121] 121 849 COV [122-122] 122 909 COV [123-123] 123 673 COV [124-124] 124 723 COV [125-125] 125 766 COV [126-126] 126 677 COV [127-127] 127 894 COV [128-128] 128 757 COV [129-129] 129 643 COV [130-130] 130 727 COV [131-131] 131 615 COV [132-132] 132 694 COV [133-133] 133 820 COV [134-134] 134 732 COV [135-135] 135 722 COV [136-136] 136 635 COV [137-137] 137 689 COV [138-138] 138 587 COV [139-139] 139 647 COV [140-140] 140 650 COV [141-141] 141 565 COV [142-142] 142 705 COV [143-143] 143 490 COV [144-144] 144 509 COV [145-145] 145 476 COV [146-146] 146 510 COV [147-147] 147 519 COV [148-148] 148 611 COV [149-149] 149 555 COV [150-150] 150 501 COV [151-151] 151 663 COV [152-152] 152 532 COV [153-153] 153 512 COV [154-154] 154 398 COV [155-155] 155 424 COV [156-156] 156 388 COV [157-157] 157 413 COV [158-158] 158 484 COV [159-159] 159 470 COV [160-160] 160 489 COV [161-161] 161 427 COV [162-162] 162 404 COV [163-163] 163 402 COV [164-164] 164 401 COV [165-165] 165 437 COV [166-166] 166 492 COV [167-167] 167 356 COV [168-168] 168 332 COV [169-169] 169 383 COV [170-170] 170 359 COV [171-171] 171 337 COV [172-172] 172 347 COV [173-173] 173 439 COV [174-174] 174 332 COV [175-175] 175 373 COV [176-176] 176 394 COV [177-177] 177 325 COV [178-178] 178 325 COV [179-179] 179 269 COV [180-180] 180 328 COV [181-181] 181 394 COV [182-182] 182 322 COV [183-183] 183 256 COV [184-184] 184 307 COV [185-185] 185 275 COV [186-186] 186 257 COV [187-187] 187 234 COV [188-188] 188 269 COV [189-189] 189 240 COV [190-190] 190 394 COV [191-191] 191 264 COV [192-192] 192 293 COV [193-193] 193 419 COV [194-194] 194 324 COV [195-195] 195 308 COV [196-196] 196 266 COV [197-197] 197 172 COV [198-198] 198 189 COV [199-199] 199 273 COV [200-200] 200 323 COV [201-201] 201 274 COV [202-202] 202 318 COV [203-203] 203 188 COV [204-204] 204 210 COV [205-205] 205 167 COV [206-206] 206 206 COV [207-207] 207 193 COV [208-208] 208 205 COV [209-209] 209 245 COV [210-210] 210 145 COV [211-211] 211 257 COV [212-212] 212 146 COV [213-213] 213 212 COV [214-214] 214 229 COV [215-215] 215 183 COV [216-216] 216 188 COV [217-217] 217 258 COV [218-218] 218 157 COV [219-219] 219 209 COV [220-220] 220 202 COV [221-221] 221 171 COV [222-222] 222 223 COV [223-223] 223 195 COV [224-224] 224 261 COV [225-225] 225 165 COV [226-226] 226 203 COV [227-227] 227 182 COV [228-228] 228 134 COV [229-229] 229 187 COV [230-230] 230 121 COV [231-231] 231 170 COV [232-232] 232 149 COV [233-233] 233 202 COV [234-234] 234 105 COV [235-235] 235 161 COV [236-236] 236 101 COV [237-237] 237 119 COV [238-238] 238 171 COV [239-239] 239 169 COV [240-240] 240 184 COV [241-241] 241 208 COV [242-242] 242 165 COV [243-243] 243 114 COV [244-244] 244 123 COV [245-245] 245 129 COV [246-246] 246 138 COV [247-247] 247 209 COV [248-248] 248 115 COV [249-249] 249 169 COV [250-250] 250 87 COV [251-251] 251 148 COV [252-252] 252 153 COV [253-253] 253 95 COV [254-254] 254 75 COV [255-255] 255 102 COV [256-256] 256 188 COV [257-257] 257 81 COV [258-258] 258 70 COV [259-259] 259 68 COV [260-260] 260 83 COV [261-261] 261 62 COV [262-262] 262 70 COV [263-263] 263 96 COV [264-264] 264 90 COV [265-265] 265 68 COV [266-266] 266 79 COV [267-267] 267 80 COV [268-268] 268 98 COV [269-269] 269 131 COV [270-270] 270 59 COV [271-271] 271 78 COV [272-272] 272 92 COV [273-273] 273 81 COV [274-274] 274 77 COV [275-275] 275 86 COV [276-276] 276 90 COV [277-277] 277 95 COV [278-278] 278 112 COV [279-279] 279 72 COV [280-280] 280 112 COV [281-281] 281 72 COV [282-282] 282 83 COV [283-283] 283 91 COV [284-284] 284 201 COV [285-285] 285 73 COV [286-286] 286 91 COV [287-287] 287 67 COV [288-288] 288 88 COV [289-289] 289 106 COV [290-290] 290 73 COV [291-291] 291 91 COV [292-292] 292 94 COV [293-293] 293 154 COV [294-294] 294 145 COV [295-295] 295 91 COV [296-296] 296 119 COV [297-297] 297 117 COV [298-298] 298 91 COV [299-299] 299 64 COV [300-300] 300 116 COV [301-301] 301 104 COV [302-302] 302 61 COV [303-303] 303 65 COV [304-304] 304 88 COV [305-305] 305 56 COV [306-306] 306 65 COV [307-307] 307 85 COV [308-308] 308 119 COV [309-309] 309 96 COV [310-310] 310 95 COV [311-311] 311 103 COV [312-312] 312 58 COV [313-313] 313 51 COV [314-314] 314 116 COV [315-315] 315 68 COV [316-316] 316 59 COV [317-317] 317 52 COV [318-318] 318 53 COV [319-319] 319 70 COV [320-320] 320 90 COV [321-321] 321 53 COV [322-322] 322 57 COV [323-323] 323 57 COV [324-324] 324 87 COV [325-325] 325 53 COV [326-326] 326 52 COV [327-327] 327 83 COV [328-328] 328 53 COV [329-329] 329 58 COV [330-330] 330 64 COV [331-331] 331 47 COV [332-332] 332 67 COV [333-333] 333 60 COV [334-334] 334 89 COV [335-335] 335 27 COV [336-336] 336 45 COV [337-337] 337 68 COV [338-338] 338 135 COV [339-339] 339 67 COV [340-340] 340 35 COV [341-341] 341 99 COV [342-342] 342 82 COV [343-343] 343 20 COV [344-344] 344 32 COV [345-345] 345 37 COV [346-346] 346 45 COV [347-347] 347 57 COV [348-348] 348 72 COV [349-349] 349 38 COV [350-350] 350 58 COV [351-351] 351 42 COV [352-352] 352 51 COV [353-353] 353 63 COV [354-354] 354 64 COV [355-355] 355 57 COV [356-356] 356 39 COV [357-357] 357 48 COV [358-358] 358 20 COV [359-359] 359 37 COV [360-360] 360 41 COV [361-361] 361 77 COV [362-362] 362 30 COV [363-363] 363 41 COV [364-364] 364 42 COV [365-365] 365 30 COV [366-366] 366 23 COV [367-367] 367 20 COV [368-368] 368 61 COV [369-369] 369 66 COV [370-370] 370 86 COV [371-371] 371 28 COV [372-372] 372 45 COV [373-373] 373 43 COV [374-374] 374 32 COV [375-375] 375 47 COV [376-376] 376 51 COV [377-377] 377 40 COV [378-378] 378 20 COV [379-379] 379 39 COV [380-380] 380 45 COV [381-381] 381 47 COV [382-382] 382 37 COV [383-383] 383 51 COV [384-384] 384 58 COV [385-385] 385 41 COV [386-386] 386 29 COV [387-387] 387 24 COV [388-388] 388 39 COV [389-389] 389 18 COV [390-390] 390 24 COV [391-391] 391 22 COV [392-392] 392 23 COV [393-393] 393 20 COV [394-394] 394 30 COV [395-395] 395 29 COV [396-396] 396 26 COV [397-397] 397 27 COV [398-398] 398 33 COV [399-399] 399 37 COV [400-400] 400 22 COV [401-401] 401 24 COV [402-402] 402 29 COV [403-403] 403 19 COV [404-404] 404 14 COV [405-405] 405 19 COV [406-406] 406 19 COV [407-407] 407 62 COV [408-408] 408 15 COV [409-409] 409 21 COV [410-410] 410 77 COV [411-411] 411 31 COV [412-412] 412 15 COV [413-413] 413 12 COV [414-414] 414 22 COV [415-415] 415 23 COV [416-416] 416 42 COV [417-417] 417 18 COV [418-418] 418 15 COV [419-419] 419 29 COV [420-420] 420 35 COV [421-421] 421 32 COV [422-422] 422 43 COV [423-423] 423 43 COV [424-424] 424 38 COV [425-425] 425 87 COV [426-426] 426 42 COV [427-427] 427 31 COV [428-428] 428 59 COV [429-429] 429 29 COV [430-430] 430 40 COV [431-431] 431 19 COV [432-432] 432 20 COV [433-433] 433 14 COV [434-434] 434 12 COV [435-435] 435 13 COV [436-436] 436 20 COV [437-437] 437 16 COV [438-438] 438 11 COV [439-439] 439 15 COV [440-440] 440 72 COV [441-441] 441 22 COV [442-442] 442 25 COV [443-443] 443 35 COV [444-444] 444 22 COV [445-445] 445 64 COV [446-446] 446 13 COV [447-447] 447 19 COV [448-448] 448 10 COV [449-449] 449 23 COV [450-450] 450 28 COV [451-451] 451 9 COV [452-452] 452 10 COV [453-453] 453 44 COV [454-454] 454 37 COV [455-455] 455 8 COV [456-456] 456 9 COV [457-457] 457 23 COV [458-458] 458 24 COV [459-459] 459 23 COV [460-460] 460 14 COV [461-461] 461 18 COV [462-462] 462 20 COV [463-463] 463 57 COV [464-464] 464 16 COV [465-465] 465 21 COV [466-466] 466 23 COV [467-467] 467 18 COV [468-468] 468 10 COV [469-469] 469 5 COV [470-470] 470 13 COV [471-471] 471 9 COV [472-472] 472 3 COV [473-473] 473 14 COV [474-474] 474 22 COV [475-475] 475 15 COV [476-476] 476 10 COV [477-477] 477 19 COV [478-478] 478 29 COV [479-479] 479 12 COV [480-480] 480 31 COV [481-481] 481 21 COV [482-482] 482 9 COV [483-483] 483 19 COV [484-484] 484 17 COV [485-485] 485 16 COV [486-486] 486 34 COV [487-487] 487 31 COV [488-488] 488 49 COV [489-489] 489 13 COV [490-490] 490 16 COV [491-491] 491 42 COV [492-492] 492 43 COV [493-493] 493 30 COV [494-494] 494 10 COV [495-495] 495 11 COV [496-496] 496 22 COV [497-497] 497 15 COV [498-498] 498 3 COV [499-499] 499 7 COV [500-500] 500 16 COV [501-501] 501 10 COV [502-502] 502 11 COV [503-503] 503 8 COV [504-504] 504 9 COV [505-505] 505 13 COV [506-506] 506 11 COV [507-507] 507 11 COV [508-508] 508 17 COV [509-509] 509 3 COV [510-510] 510 11 COV [511-511] 511 12 COV [512-512] 512 9 COV [513-513] 513 21 COV [514-514] 514 37 COV [515-515] 515 13 COV [516-516] 516 12 COV [517-517] 517 10 COV [518-518] 518 28 COV [519-519] 519 15 COV [520-520] 520 38 COV [521-521] 521 8 COV [522-522] 522 10 COV [523-523] 523 6 COV [524-524] 524 17 COV [525-525] 525 15 COV [526-526] 526 8 COV [527-527] 527 11 COV [528-528] 528 11 COV [529-529] 529 17 COV [530-530] 530 29 COV [531-531] 531 51 COV [532-532] 532 11 COV [533-533] 533 21 COV [534-534] 534 9 COV [535-535] 535 10 COV [536-536] 536 13 COV [537-537] 537 13 COV [538-538] 538 8 COV [539-539] 539 5 COV [540-540] 540 3 COV [541-541] 541 16 COV [542-542] 542 10 COV [543-543] 543 25 COV [544-544] 544 10 COV [545-545] 545 55 COV [546-546] 546 17 COV [547-547] 547 3 COV [548-548] 548 10 COV [549-549] 549 3 COV [550-550] 550 11 COV [551-551] 551 8 COV [552-552] 552 6 COV [553-553] 553 32 COV [554-554] 554 12 COV [555-555] 555 4 COV [556-556] 556 4 COV [557-557] 557 9 COV [558-558] 558 7 COV [559-559] 559 2 COV [560-560] 560 3 COV [561-561] 561 12 COV [562-562] 562 10 COV [563-563] 563 77 COV [564-564] 564 15 COV [565-565] 565 16 COV [566-566] 566 18 COV [567-567] 567 19 COV [568-568] 568 13 COV [569-569] 569 25 COV [570-570] 570 51 COV [571-571] 571 59 COV [572-572] 572 5 COV [573-573] 573 13 COV [574-574] 574 17 COV [575-575] 575 9 COV [576-576] 576 13 COV [577-577] 577 9 COV [578-578] 578 12 COV [579-579] 579 52 COV [580-580] 580 2 COV [581-581] 581 5 COV [582-582] 582 10 COV [583-583] 583 8 COV [584-584] 584 8 COV [585-585] 585 10 COV [586-586] 586 5 COV [587-587] 587 6 COV [588-588] 588 3 COV [589-589] 589 7 COV [590-590] 590 28 COV [591-591] 591 11 COV [592-592] 592 35 COV [593-593] 593 8 COV [594-594] 594 4 COV [595-595] 595 4 COV [596-596] 596 6 COV [597-597] 597 4 COV [598-598] 598 8 COV [599-599] 599 13 COV [600-600] 600 11 COV [601-601] 601 4 COV [602-602] 602 5 COV [603-603] 603 3 COV [604-604] 604 4 COV [605-605] 605 8 COV [606-606] 606 3 COV [607-607] 607 5 COV [608-608] 608 3 COV [609-609] 609 3 COV [610-610] 610 3 COV [611-611] 611 2 COV [612-612] 612 6 COV [613-613] 613 3 COV [614-614] 614 5 COV [615-615] 615 2 COV [616-616] 616 7 COV [617-617] 617 11 COV [618-618] 618 12 COV [619-619] 619 14 COV [620-620] 620 10 COV [621-621] 621 15 COV [622-622] 622 1 COV [623-623] 623 3 COV [624-624] 624 7 COV [625-625] 625 1 COV [626-626] 626 7 COV [627-627] 627 4 COV [628-628] 628 8 COV [629-629] 629 48 COV [630-630] 630 7 COV [631-631] 631 10 COV [632-632] 632 19 COV [633-633] 633 17 COV [634-634] 634 1 COV [636-636] 636 4 COV [637-637] 637 5 COV [638-638] 638 4 COV [639-639] 639 2 COV [640-640] 640 5 COV [641-641] 641 3 COV [642-642] 642 4 COV [643-643] 643 8 COV [644-644] 644 6 COV [645-645] 645 11 COV [646-646] 646 6 COV [647-647] 647 2 COV [648-648] 648 5 COV [649-649] 649 6 COV [650-650] 650 24 COV [651-651] 651 9 COV [652-652] 652 25 COV [653-653] 653 8 COV [654-654] 654 9 COV [655-655] 655 2 COV [656-656] 656 5 COV [657-657] 657 4 COV [658-658] 658 6 COV [659-659] 659 5 COV [660-660] 660 6 COV [661-661] 661 7 COV [662-662] 662 6 COV [663-663] 663 23 COV [664-664] 664 29 COV [665-665] 665 3 COV [666-666] 666 3 COV [667-667] 667 3 COV [668-668] 668 8 COV [669-669] 669 7 COV [670-670] 670 3 COV [671-671] 671 9 COV [672-672] 672 2 COV [673-673] 673 3 COV [674-674] 674 5 COV [675-675] 675 5 COV [676-676] 676 11 COV [677-677] 677 25 COV [678-678] 678 11 COV [679-679] 679 6 COV [680-680] 680 3 COV [681-681] 681 8 COV [682-682] 682 9 COV [683-683] 683 8 COV [684-684] 684 22 COV [685-685] 685 1 COV [686-686] 686 2 COV [687-687] 687 4 COV [688-688] 688 12 COV [689-689] 689 5 COV [690-690] 690 6 COV [691-691] 691 9 COV [692-692] 692 28 COV [693-693] 693 2 COV [694-694] 694 40 COV [695-695] 695 2 COV [698-698] 698 2 COV [699-699] 699 3 COV [700-700] 700 1 COV [701-701] 701 2 COV [702-702] 702 3 COV [704-704] 704 3 COV [705-705] 705 5 COV [706-706] 706 2 COV [707-707] 707 1 COV [708-708] 708 18 COV [709-709] 709 1 COV [711-711] 711 4 COV [712-712] 712 1 COV [713-713] 713 4 COV [714-714] 714 2 COV [715-715] 715 3 COV [716-716] 716 1 COV [717-717] 717 13 COV [718-718] 718 10 COV [719-719] 719 5 COV [720-720] 720 12 COV [721-721] 721 4 COV [722-722] 722 5 COV [723-723] 723 2 COV [724-724] 724 2 COV [725-725] 725 2 COV [727-727] 727 1 COV [728-728] 728 1 COV [730-730] 730 2 COV [731-731] 731 2 COV [732-732] 732 3 COV [735-735] 735 4 COV [736-736] 736 13 COV [737-737] 737 1 COV [738-738] 738 5 COV [739-739] 739 6 COV [740-740] 740 6 COV [741-741] 741 1 COV [742-742] 742 1 COV [743-743] 743 1 COV [744-744] 744 3 COV [745-745] 745 2 COV [746-746] 746 2 COV [747-747] 747 2 COV [748-748] 748 4 COV [749-749] 749 1 COV [750-750] 750 1 COV [751-751] 751 2 COV [752-752] 752 2 COV [753-753] 753 4 COV [754-754] 754 3 COV [755-755] 755 9 COV [756-756] 756 3 COV [757-757] 757 4 COV [758-758] 758 1 COV [759-759] 759 3 COV [760-760] 760 3 COV [761-761] 761 14 COV [762-762] 762 1 COV [763-763] 763 1 COV [764-764] 764 2 COV [765-765] 765 1 COV [766-766] 766 1 COV [767-767] 767 2 COV [768-768] 768 8 COV [769-769] 769 4 COV [770-770] 770 3 COV [771-771] 771 2 COV [773-773] 773 4 COV [774-774] 774 2 COV [775-775] 775 4 COV [776-776] 776 2 COV [777-777] 777 5 COV [778-778] 778 5 COV [779-779] 779 4 COV [780-780] 780 1 COV [781-781] 781 7 COV [782-782] 782 6 COV [783-783] 783 1 COV [784-784] 784 3 COV [785-785] 785 3 COV [786-786] 786 4 COV [787-787] 787 13 COV [788-788] 788 2 COV [789-789] 789 4 COV [790-790] 790 2 COV [791-791] 791 5 COV [792-792] 792 4 COV [793-793] 793 3 COV [794-794] 794 2 COV [795-795] 795 1 COV [796-796] 796 6 COV [797-797] 797 2 COV [798-798] 798 2 COV [799-799] 799 1 COV [800-800] 800 3 COV [801-801] 801 3 COV [802-802] 802 2 COV [803-803] 803 2 COV [804-804] 804 1 COV [805-805] 805 2 COV [806-806] 806 1 COV [808-808] 808 3 COV [809-809] 809 2 COV [810-810] 810 1 COV [811-811] 811 2 COV [813-813] 813 2 COV [815-815] 815 2 COV [818-818] 818 2 COV [819-819] 819 2 COV [820-820] 820 3 COV [821-821] 821 1 COV [822-822] 822 2 COV [824-824] 824 1 COV [826-826] 826 2 COV [827-827] 827 3 COV [828-828] 828 3 COV [829-829] 829 1 COV [830-830] 830 4 COV [831-831] 831 1 COV [832-832] 832 2 COV [833-833] 833 1 COV [834-834] 834 3 COV [835-835] 835 2 COV [836-836] 836 5 COV [837-837] 837 26 COV [838-838] 838 5 COV [839-839] 839 2 COV [840-840] 840 1 COV [841-841] 841 2 COV [843-843] 843 3 COV [844-844] 844 15 COV [845-845] 845 1 COV [846-846] 846 1 COV [847-847] 847 1 COV [849-849] 849 1 COV [850-850] 850 2 COV [852-852] 852 3 COV [853-853] 853 1 COV [856-856] 856 1 COV [858-858] 858 1 COV [859-859] 859 1 COV [860-860] 860 14 COV [861-861] 861 4 COV [862-862] 862 29 COV [863-863] 863 3 COV [864-864] 864 2 COV [865-865] 865 1 COV [866-866] 866 2 COV [867-867] 867 1 COV [868-868] 868 4 COV [869-869] 869 1 COV [871-871] 871 1 COV [872-872] 872 3 COV [873-873] 873 7 COV [875-875] 875 2 COV [876-876] 876 1 COV [877-877] 877 2 COV [878-878] 878 1 COV [881-881] 881 2 COV [888-888] 888 1 COV [891-891] 891 2 COV [893-893] 893 2 COV [895-895] 895 1 COV [897-897] 897 1 COV [898-898] 898 2 COV [899-899] 899 2 COV [900-900] 900 3 COV [901-901] 901 1 COV [902-902] 902 1 COV [903-903] 903 1 COV [905-905] 905 1 COV [907-907] 907 2 COV [908-908] 908 1 COV [909-909] 909 1 COV [910-910] 910 1 COV [911-911] 911 1 COV [912-912] 912 3 COV [913-913] 913 1 COV [914-914] 914 1 COV [915-915] 915 1 COV [916-916] 916 2 COV [917-917] 917 2 COV [918-918] 918 2 COV [919-919] 919 4 COV [920-920] 920 2 COV [921-921] 921 1 COV [922-922] 922 2 COV [923-923] 923 1 COV [925-925] 925 10 COV [926-926] 926 1 COV [927-927] 927 2 COV [928-928] 928 3 COV [929-929] 929 7 COV [930-930] 930 35 COV [932-932] 932 1 COV [933-933] 933 2 COV [939-939] 939 2 COV [940-940] 940 1 COV [942-942] 942 1 COV [943-943] 943 1 COV [947-947] 947 1 COV [950-950] 950 1 COV [951-951] 951 1 COV [952-952] 952 1 COV [953-953] 953 3 COV [954-954] 954 2 COV [955-955] 955 1 COV [957-957] 957 1 COV [958-958] 958 2 COV [959-959] 959 2 COV [960-960] 960 1 COV [961-961] 961 1 COV [962-962] 962 1 COV [963-963] 963 4 COV [964-964] 964 1 COV [965-965] 965 1 COV [966-966] 966 1 COV [968-968] 968 2 COV [969-969] 969 1 COV [970-970] 970 1 COV [973-973] 973 1 COV [974-974] 974 2 COV [975-975] 975 1 COV [978-978] 978 1 COV [980-980] 980 1 COV [981-981] 981 1 COV [982-982] 982 1 COV [983-983] 983 1 COV [984-984] 984 2 COV [985-985] 985 1 COV [987-987] 987 2 COV [989-989] 989 1 COV [990-990] 990 3 COV [991-991] 991 2 COV [993-993] 993 2 COV [994-994] 994 1 COV [995-995] 995 1 COV [997-997] 997 1 COV [998-998] 998 3 COV [999-999] 999 2 COV [1000<] 1000 756 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile GCD 0.0 0.006 0.000 0.000 0.000 0.002 0.002 GCD 1.0 0.010 0.010 0.010 0.010 18.153 18.153 GCD 2.0 0.017 0.002 0.002 0.005 0.018 0.425 GCD 3.0 0.025 0.005 0.005 0.010 0.013 0.145 GCD 4.0 0.035 0.002 0.002 0.015 0.743 0.760 GCD 5.0 0.052 0.002 0.002 0.007 0.127 1.933 GCD 6.0 0.079 0.002 0.005 0.068 0.308 0.595 GCD 7.0 0.092 0.005 0.023 0.080 0.675 1.525 GCD 8.0 0.116 0.002 0.007 0.023 0.055 0.697 GCD 9.0 0.145 0.005 0.010 0.060 0.083 0.168 GCD 10.0 0.187 0.002 0.005 0.015 0.065 0.183 GCD 11.0 0.247 0.005 0.005 0.018 0.093 0.207 GCD 12.0 0.337 0.002 0.002 0.010 0.040 0.102 GCD 13.0 0.459 0.005 0.010 0.023 0.047 0.130 GCD 14.0 0.605 0.002 0.005 0.010 0.032 0.117 GCD 15.0 0.817 0.005 0.007 0.015 0.043 0.085 GCD 16.0 1.208 0.005 0.010 0.020 0.045 0.120 GCD 17.0 1.744 0.007 0.013 0.020 0.050 0.132 GCD 18.0 2.574 0.005 0.013 0.025 0.052 0.108 GCD 19.0 4.006 0.010 0.015 0.030 0.068 0.135 GCD 20.0 6.218 0.010 0.018 0.038 0.075 0.165 GCD 21.0 9.521 0.013 0.025 0.047 0.090 0.188 GCD 22.0 14.553 0.015 0.027 0.055 0.112 0.228 GCD 23.0 21.500 0.018 0.032 0.070 0.135 0.250 GCD 24.0 30.514 0.020 0.040 0.078 0.153 0.290 GCD 25.0 40.876 0.023 0.045 0.090 0.183 0.335 GCD 26.0 51.692 0.025 0.047 0.102 0.200 0.355 GCD 27.0 62.394 0.025 0.055 0.115 0.233 0.407 GCD 28.0 71.392 0.027 0.058 0.120 0.243 0.425 GCD 29.0 78.928 0.025 0.058 0.127 0.262 0.488 GCD 30.0 84.622 0.027 0.055 0.125 0.268 0.475 GCD 31.0 89.163 0.025 0.055 0.125 0.280 0.515 GCD 32.0 92.253 0.025 0.055 0.125 0.285 0.543 GCD 33.0 94.496 0.025 0.058 0.127 0.292 0.545 GCD 34.0 96.115 0.023 0.055 0.130 0.295 0.618 GCD 35.0 97.206 0.020 0.050 0.117 0.298 0.538 GCD 36.0 97.984 0.025 0.058 0.130 0.282 0.620 GCD 37.0 98.566 0.020 0.047 0.127 0.292 0.605 GCD 38.0 98.967 0.018 0.045 0.132 0.352 0.772 GCD 39.0 99.254 0.015 0.047 0.120 0.282 0.757 GCD 40.0 99.441 0.018 0.043 0.117 0.287 0.805 GCD 41.0 99.618 0.015 0.052 0.132 0.325 0.550 GCD 42.0 99.736 0.010 0.050 0.165 0.395 0.695 GCD 43.0 99.821 0.005 0.018 0.112 0.460 0.827 GCD 44.0 99.871 0.002 0.032 0.195 0.412 1.092 GCD 45.0 99.915 0.013 0.055 0.123 0.435 0.812 GCD 46.0 99.940 0.007 0.015 0.183 0.590 0.738 GCD 47.0 99.958 0.002 0.002 0.027 0.117 2.145 GCD 48.0 99.977 0.002 0.002 0.060 0.290 0.555 GCD 49.0 99.983 0.460 0.460 0.918 2.122 2.122 GCD 50.0 99.990 0.002 0.002 0.058 0.545 4.173 GCD 51.0 99.994 0.087 0.087 0.087 0.347 0.347 GCD 52.0 99.998 2.267 2.267 2.267 4.685 4.685 GCD 53.0 100.000 0.085 0.085 0.085 0.085 0.085