[high_fourier] Nextflow Workflow Report

task_id	process	tag	status	hash	allocated cpus	%cpu	allocated memory	%mem	vmem	rss	peak_vmem	peak_rss	allocated time	duration	realtime	script	exit	submit	start	complete	rchar	wchar	syscr	syscw	read_bytes	write_bytes	native_id	name	module	container	disk	attempt	scratch	workdir


samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_8_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_4_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_13_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_18_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_1_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_2_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_3_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_15_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_6_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_14_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_11_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_17_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_12_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_7_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_10_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_9_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_5_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
samtools sort -T deleteme -m 966367642 -@ 2 \
    -o sorted.bam zr1394_16_s456.bam || exit $?
    samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam
    samtools index calmd.bam
change_sam_queries.py -T 8 -t . calmd.bam variants.bam || exit $?
    find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;
change_sam_queries.py -T 8 -t . -G calmd.bam clustering.bam || exit $?
    find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;
change_sam_queries.py -T 8 -t . -G calmd.bam clustering.bam || exit $?
    find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;
change_sam_queries.py -T 8 -t . calmd.bam variants.bam || exit $?
    find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;
change_sam_queries.py -T 8 -t . calmd.bam variants.bam || exit $?
    find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;
change_sam_queries.py -T 8 -t . -G calmd.bam clustering.bam || exit $?
    find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;
change_sam_queries.py -T 8 -t . -G calmd.bam clustering.bam || exit $?
    find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;

task_id	process	tag	status	hash	allocated cpus	%cpu	allocated memory	%mem	vmem	rss	peak_vmem	peak_rss	allocated time	duration	realtime	script	submit	start	complete	rchar	wchar	syscr	syscw	read_bytes	write_bytes	native_id	name	module	container	disk	attempt	scratch	workdir
1	SNPS:preprocessing	zr1394_8_s456	COMPLETED	`58/50ee17`	2	102.6	2.000 GB	0.3	2.348 GB	792.355 MB	2.372 GB	859.516 MB	2h 0m	38.3s	38.2s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_8_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:08+00:00	2.700 GB	504.045 MB	94.270 kB	2.711 MB	0	262.230 MB	32145	SNPS:preprocessing (zr1394_8_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/58/50ee175ae012a5df14c1fb13a4d573`
2	SNPS:preprocessing	zr1394_4_s456	COMPLETED	`7b/c11058`	2	93.9	2.000 GB	0.4	2.348 GB	924.891 MB	2.377 GB	1003.910 MB	2h 0m	47.0s	47.0s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_4_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:16+00:00	2.758 GB	586.536 MB	103.883 kB	3.176 MB	0	303.207 MB	32104	SNPS:preprocessing (zr1394_4_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/7b/c11058eecfa09d7508e289060f32c3`
3	SNPS:preprocessing	zr1394_13_s456	COMPLETED	`12/ed86f3`	2	95.4	2.000 GB	0.6	2.441 GB	1.407 GB	2.503 GB	1.528 GB	2h 0m	1m 8s	1m 8s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_13_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:38+00:00	2.958 GB	887.671 MB	141.619 kB	4.979 MB	0	443.484 MB	32081	SNPS:preprocessing (zr1394_13_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/12/ed86f30d670c4f8b34402421b2cc96`
4	SNPS:preprocessing	zr1394_18_s456	COMPLETED	`50/efd48e`	2	101.9	2.000 GB	0.5	2.441 GB	1.136 GB	2.503 GB	1.234 GB	2h 0m	53.0s	52.9s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_18_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:22+00:00	2.861 GB	733.463 MB	121.524 kB	4.013 MB	0	375.406 MB	32125	SNPS:preprocessing (zr1394_18_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/50/efd48ece0d79eb8790d3225f9a3a2e`
5	SNPS:preprocessing	zr1394_1_s456	COMPLETED	`42/62ec7a`	2	94.7	2.000 GB	0.4	2.348 GB	933.809 MB	2.378 GB	1013.801 MB	2h 0m	48.0s	47.9s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_1_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:17+00:00	2.766 GB	594.784 MB	104.524 kB	3.203 MB	0	309.066 MB	32031	SNPS:preprocessing (zr1394_1_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/42/62ec7a7d7bca2a2f499028d4dac820`
6	SNPS:preprocessing	zr1394_2_s456	COMPLETED	`f1/bfba2c`	2	93.1	2.000 GB	0.4	2.348 GB	918.617 MB	2.377 GB	997.063 MB	2h 0m	47.5s	47.4s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_2_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:17+00:00	2.761 GB	586.352 MB	103.450 kB	3.152 MB	0	305.168 MB	32166	SNPS:preprocessing (zr1394_2_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/f1/bfba2cd1c50e9019680b05bafe30f4`
7	SNPS:preprocessing	zr1394_3_s456	COMPLETED	`4e/7f560c`	2	98.0	2.000 GB	0.4	2.348 GB	937.090 MB	2.378 GB	1016.965 MB	2h 0m	44.6s	44.5s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_3_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:14+00:00	2.770 GB	597.375 MB	104.758 kB	3.204 MB	0	311.527 MB	32089	SNPS:preprocessing (zr1394_3_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/4e/7f560ca79d18941aadeceb46d733d4`
8	SNPS:preprocessing	zr1394_15_s456	COMPLETED	`ac/49fc45`	2	94.8	2.000 GB	0.6	2.441 GB	1.430 GB	2.503 GB	1.553 GB	2h 0m	1m 9s	1m 9s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_15_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:39+00:00	2.958 GB	891.810 MB	143.243 kB	5.032 MB	0	442.941 MB	32072	SNPS:preprocessing (zr1394_15_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/ac/49fc45adb94f6056426c3da4bcf9ea`
9	SNPS:preprocessing	zr1394_6_s456	COMPLETED	`16/71b673`	2	94.1	2.000 GB	0.4	2.348 GB	929.875 MB	2.378 GB	1009.352 MB	2h 0m	47.2s	47.1s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_6_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:16+00:00	2.776 GB	600.846 MB	104.282 kB	3.197 MB	0	315.590 MB	32026	SNPS:preprocessing (zr1394_6_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/16/71b6739f76ad07b574f237524e1170`
10	SNPS:preprocessing	zr1394_14_s456	COMPLETED	`f4/0b7637`	2	101.3	2.000 GB	0.7	2.441 GB	1.650 GB	2.514 GB	1.793 GB	2h 0m	1m 12s	1m 12s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_14_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:00:29+00:00	2022-07-20T23:00:29+00:00	2022-07-20T23:01:42+00:00	3.068 GB	1.012 GB	159.646 kB	5.778 MB	0	520.625 MB	32060	SNPS:preprocessing (zr1394_14_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/f4/0b76371ba61055a2c4a5bb90934bae`
11	SNPS:preprocessing	zr1394_11_s456	COMPLETED	`64/26b33b`	2	100.3	2.000 GB	0.5	2.441 GB	1.177 GB	2.503 GB	1.278 GB	2h 0m	59.5s	59.4s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_11_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:01:08+00:00	2022-07-20T23:01:08+00:00	2022-07-20T23:02:07+00:00	2.846 GB	733.416 MB	124.461 kB	4.136 MB	0	364.531 MB	41281	SNPS:preprocessing (zr1394_11_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/64/26b33b4bcfbb1aa10512509b7a99b0`
12	SNPS:preprocessing	zr1394_17_s456	COMPLETED	`df/dfd323`	2	105.5	2.000 GB	0.4	2.348 GB	985.613 MB	2.380 GB	1.045 GB	2h 0m	51.4s	51.3s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_17_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:01:14+00:00	2022-07-20T23:01:14+00:00	2022-07-20T23:02:05+00:00	2.770 GB	614.728 MB	108.499 kB	3.402 MB	0	311.211 MB	43957	SNPS:preprocessing (zr1394_17_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/df/dfd323f0e9d75220b5ba430eff0585`
13	SNPS:preprocessing	zr1394_12_s456	COMPLETED	`8d/c87a41`	2	101.1	2.000 GB	0.5	2.441 GB	1.268 GB	2.503 GB	1.377 GB	2h 0m	1m 5s	1m 5s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_12_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:01:16+00:00	2022-07-20T23:01:16+00:00	2022-07-20T23:02:22+00:00	2.929 GB	824.513 MB	131.284 kB	4.491 MB	0	423.770 MB	45721	SNPS:preprocessing (zr1394_12_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/8d/c87a419f153b3989f54680189402cb`
14	SNPS:preprocessing	zr1394_7_s456	COMPLETED	`5d/6fff5e`	2	95.5	2.000 GB	0.4	2.348 GB	1003.492 MB	2.381 GB	1.064 GB	2h 0m	57.8s	57.7s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_7_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:01:16+00:00	2022-07-20T23:01:17+00:00	2022-07-20T23:02:14+00:00	2.798 GB	639.566 MB	109.593 kB	3.459 MB	4.000 kB	330.969 MB	45833	SNPS:preprocessing (zr1394_7_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/5d/6fff5ebbd5cbaea2425318b0e08c2e`
15	SNPS:preprocessing	zr1394_10_s456	COMPLETED	`63/882d12`	2	114.9	2.000 GB	0.8	2.442 GB	1.983 GB	2.543 GB	2.154 GB	2h 0m	1m 42s	1m 42s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_10_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:01:17+00:00	2022-07-20T23:01:17+00:00	2022-07-20T23:02:59+00:00	3.487 GB	1.572 GB	246.323 kB	7.932 MB	4.000 kB	903.684 MB	46568	SNPS:preprocessing (zr1394_10_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/63/882d12cf864c17393baf39032dabb5`
16	SNPS:preprocessing	zr1394_9_s456	COMPLETED	`8c/f6ec62`	2	103.0	2.000 GB	0.7	2.441 GB	1.649 GB	2.514 GB	1.791 GB	2h 0m	1m 14s	1m 14s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_9_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:01:22+00:00	2022-07-20T23:01:22+00:00	2022-07-20T23:02:37+00:00	3.094 GB	1.037 GB	159.311 kB	5.860 MB	0	539.508 MB	2848	SNPS:preprocessing (zr1394_9_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/8c/f6ec62f539617ac6919361f4a9a069`
17	SNPS:preprocessing	zr1394_5_s456	COMPLETED	`ff/20fd74`	2	99.9	2.000 GB	0.4	2.348 GB	994.805 MB	2.380 GB	1.055 GB	2h 0m	53.4s	53.3s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_5_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:01:17+00:00	2022-07-20T23:01:17+00:00	2022-07-20T23:02:11+00:00	2.804 GB	641.850 MB	108.993 kB	3.434 MB	0	335.434 MB	47253	SNPS:preprocessing (zr1394_5_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/ff/20fd74fe6a1445520b9c19c1d122d2`
18	SNPS:preprocessing	zr1394_16_s456	COMPLETED	`c9/abe043`	2	110.1	2.000 GB	0.6	2.441 GB	1.480 GB	2.503 GB	1.608 GB	2h 0m	1m 1s	1m 1s	`samtools sort -T deleteme -m 966367642 -@ 2 \ -o sorted.bam zr1394_16_s456.bam \|\| exit $? samtools calmd -b sorted.bam Olurida_v081-mergecat98.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam`	2022-07-20T23:01:38+00:00	2022-07-20T23:01:38+00:00	2022-07-20T23:02:39+00:00	2.992 GB	930.332 MB	147.007 kB	5.196 MB	0	466.887 MB	9069	SNPS:preprocessing (zr1394_16_s456)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/c9/abe0438a3341a32d387c414937e0a7`
19	SNPS:masking	zr1394_8_s456 - variants	COMPLETED	`52/61b3a4`	8	413.9	8.000 GB	0.0	688.898 MB	177.797 MB	690.801 MB	179.762 MB	2h 0m	47.3s	47.2s	`change_sam_queries.py -T 8 -t . calmd.bam variants.bam \|\| exit $? find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;`	2022-07-20T23:01:09+00:00	2022-07-20T23:01:09+00:00	2022-07-20T23:01:56+00:00	325.516 MB	307.702 MB	42.087 kB	20.593 kB	0	307.711 MB	41388	SNPS:masking (zr1394_8_s456 - variants)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/52/61b3a4d06c5805622c84e7f968d0a4`
20	SNPS:masking	zr1394_8_s456 - clustering	COMPLETED	`20/f1100a`	8	413.0	8.000 GB	0.0	688.914 MB	176.367 MB	690.816 MB	178.371 MB	2h 0m	44.2s	44.1s	`change_sam_queries.py -T 8 -t . -G calmd.bam clustering.bam \|\| exit $? find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;`	2022-07-20T23:01:09+00:00	2022-07-20T23:01:09+00:00	2022-07-20T23:01:53+00:00	312.743 MB	281.995 MB	41.953 kB	20.451 kB	0	282.004 MB	41392	SNPS:masking (zr1394_8_s456 - clustering)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/20/f1100a57e6afdcc8b2503ea971ab8b`
21	SNPS:masking	zr1394_3_s456 - clustering	COMPLETED	`2f/6cda0e`	8	381.8	8.000 GB	0.0	686.352 MB	174.879 MB	747.199 MB	177.328 MB	2h 0m	50.9s	50.8s	`change_sam_queries.py -T 8 -t . -G calmd.bam clustering.bam \|\| exit $? find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;`	2022-07-20T23:01:42+00:00	2022-07-20T23:01:42+00:00	2022-07-20T23:02:33+00:00	365.567 MB	335.408 MB	49.487 kB	24.204 kB	0	335.414 MB	10424	SNPS:masking (zr1394_3_s456 - clustering)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/2f/6cda0ef18f0b4601b28dbe042f7432`
22	SNPS:masking	zr1394_3_s456 - variants	COMPLETED	`8e/03700c`	8	392.1	8.000 GB	0.0	686.336 MB	175.387 MB	688.051 MB	178.121 MB	2h 0m	58.8s	58.7s	`change_sam_queries.py -T 8 -t . calmd.bam variants.bam \|\| exit $? find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;`	2022-07-20T23:01:14+00:00	2022-07-20T23:01:14+00:00	2022-07-20T23:02:13+00:00	380.720 MB	365.927 MB	49.646 kB	24.375 kB	0	365.949 MB	43965	SNPS:masking (zr1394_3_s456 - variants)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/8e/03700ca165a90eb455fe437d95bd8a`
23	SNPS:masking	zr1394_4_s456 - variants	COMPLETED	`28/bd78a3`	8	424.3	8.000 GB	0.0	686.617 MB	175.445 MB	688.332 MB	177.418 MB	2h 0m	53.0s	53.0s	`change_sam_queries.py -T 8 -t . calmd.bam variants.bam \|\| exit $? find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;`	2022-07-20T23:01:56+00:00	2022-07-20T23:01:56+00:00	2022-07-20T23:02:49+00:00	370.825 MB	354.744 MB	49.027 kB	24.065 kB	0	354.758 MB	17337	SNPS:masking (zr1394_4_s456 - variants)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/28/bd78a3219870ddc60f92a2e960c15d`
24	SNPS:masking	zr1394_4_s456 - clustering	COMPLETED	`ff/1da59f`	8	405.0	8.000 GB	0.0	686.633 MB	174.520 MB	688.348 MB	176.391 MB	2h 0m	49.1s	49.0s	`change_sam_queries.py -T 8 -t . -G calmd.bam clustering.bam \|\| exit $? find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;`	2022-07-20T23:01:53+00:00	2022-07-20T23:01:53+00:00	2022-07-20T23:02:42+00:00	356.524 MB	325.953 MB	48.876 kB	23.902 kB	0	325.969 MB	15125	SNPS:masking (zr1394_4_s456 - clustering)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/ff/1da59fa626ea46728d395caf6587c7`
25	SNPS:masking	zr1394_6_s456 - clustering	COMPLETED	`0e/34e3d9`	8	347.0	8.000 GB	0.0	686.023 MB	174.215 MB	687.738 MB	176.441 MB	2h 0m	53.0s	53.0s	`change_sam_queries.py -T 8 -t . -G calmd.bam clustering.bam \|\| exit $? find -mindepth 1 -maxdepth 1 -type d -exec rm -r {} \;`	2022-07-20T23:02:13+00:00	2022-07-20T23:02:13+00:00	2022-07-20T23:03:06+00:00	370.268 MB	340.987 MB	49.169 kB	24.057 kB	0	341.000 MB	26215	SNPS:masking (zr1394_6_s456 - clustering)	-	`-`	-	1	`-`	`/home/shared/8TB_HDD_01/sam/analyses/20220720-olur-zr1394_all_untrimmed-nextflow_epidiverse-snp-conda/work/0e/34e3d98c7d38f0500a44c3395e9ce4`

Nextflow workflow report

`[high_fourier]`

Resource Usage

CPU

Memory

Job Duration

I/O

Tasks