FastQCFastQC Report
Thu 7 Jul 2022
SRR3321260.fastq.trimmed.20220707.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3321260.fastq.trimmed.20220707.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6984410
Sequences flagged as poor quality0
Sequence length15-36
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGGATAGCTTGCCTCTTTTGGCCGGTGAGTAG176700.2529920208006116No Hit
CTCAGACAGGCGTAGCCCCAGGAGGAACCTGGAGCC151640.21711211111604276No Hit
CGGACACGGAAAGGATTGACAGATTGATAGCTCTTT137710.19716769204557008No Hit
CCTCAGACAGGCGTAGCCCCAGGAGGAACCTGGAGC116880.1673441278504555No Hit
CCCGGGATAGCTTGCCTCTTTTGGCCGGTGAGTAGA97640.1397970623144976No Hit
CCGGACACGGAAAGGATTGACAGATTGATAGCTCTT77150.11046029657480017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)