FastQCFastQC Report
Thu 7 Jul 2022
SRR3321246.fastq.trimmed.20220707.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3321246.fastq.trimmed.20220707.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29131124
Sequences flagged as poor quality0
Sequence length36
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACAACATCCTTGGAAAAAGGATCCTGCCATGTTC458660.1574467226187359No Hit
CAACATCCTTGGAAAAAGGATCCTGCCATGTTCTCC383220.13155002189410886No Hit
GGAGGATCCTACAATTATGACATATCTAAAATGTCT346640.11899300555653122No Hit
CTCCCACATCCGACCAGCTGCATCATGGCAGTTATC310400.10655270287545375No Hit
CCCACATCCGACCAGCTGCATCATGGCAGTTATCAA305780.10496677024889256No Hit
GCCAAATCCATCCCCTTTATGGACAAGCCACTGGGA305590.10490154791143658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)