FastQCFastQC Report
Thu 7 Jul 2022
SRR3321232.fastq.trimmed.20220707.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3321232.fastq.trimmed.20220707.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3770390
Sequences flagged as poor quality0
Sequence length15-36
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACATCCTTGGAAAAAGGATCCTGCCATGTTCTCC59380.15749033919568003No Hit
CTCCCACATCCGACCAGCTGCATCATGGCAGTTATC51430.1364049872824827No Hit
CCCACATCCGACCAGCTGCATCATGGCAGTTATCAA45220.11993454258047577No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCC43640.11574399465307303TruSeq Adapter, Index 6 (100% over 36bp)
GCCAAATCCATCCCCTTTATGGACAAGCCACTGGGA39610.10505544519267236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)