FastQCFastQC Report
Thu 7 Jul 2022
SRR3321223.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3321223.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9397072
Sequences flagged as poor quality0
Sequence length36
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAT5073845.399383978328569TruSeq Adapter, Index 9 (100% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGA1625851.7301665880606214TruSeq Adapter, Index 7 (97% over 35bp)
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCACA183080.19482664387375132No Hit
CCACAACATCCTTGGAAAAAGGATCCTGCCATGTTC111800.11897322910796045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)