FastQCFastQC Report
Thu 7 Jul 2022
SRR3321207.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3321207.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9041484
Sequences flagged as poor quality0
Sequence length36
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTT1001761.1079597110385861TruSeq Adapter, Index 1 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTA728110.8052992185796048TruSeq Adapter, Index 3 (100% over 36bp)
GCCCGGGATAGCTTGCCTCTTTTGGCCGGTGAGTAG211980.2344526628593271No Hit
CTCAGACAGGCGTAGCCCCAGGAGGAACCTGGAGCC188940.208970120391741No Hit
CGGACACGGAAAGGATTGACAGATTGATAGCTCTTT150830.16681996008619823No Hit
CCTCAGACAGGCGTAGCCCCAGGAGGAACCTGGAGC142060.15712022495422212No Hit
CTGACTTTCAATAGATCGCAGCGAGTGAGCTGCTCT141720.15674418049072475No Hit
CCGGGATAGCTTGCCTCTTTTGGCCGGTGAGTAGAG136760.15125835537617496No Hit
CCCGGGATAGCTTGCCTCTTTTGGCCGGTGAGTAGA126720.1401539835717234No Hit
CTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTG105120.11626410000836146No Hit
CCTCACCCGGCCCGGACACGGAAAGGATTGACAGAT91220.10089051753008688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)