FastQCFastQC Report
Thu 7 Jul 2022
SRR3321200.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3321200.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12575700
Sequences flagged as poor quality0
Sequence length36
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAG1011880.8046311537329929TruSeq Adapter, Index 7 (100% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCA282870.22493380090173906TruSeq Adapter, Index 7 (100% over 35bp)
CCACAACATCCTTGGAAAAAGGATCCTGCCATGTTC140870.11201762128549503No Hit
CAACATCCTTGGAAAAAGGATCCTGCCATGTTCTCC129900.10329444881795845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)