#id: dupradar #section_name: 'DupRadar' #section_href: 'bioconductor.org/packages/release/bioc/html/dupRadar.html' #description: "provides duplication rate quality control for RNA-Seq datasets. Highly expressed genes can be expected to have a lot of duplicate reads, but high numbers of duplicates at low read counts can indicate low library complexity with technical duplication. # This plot shows the general linear models - a summary of the gene duplication distributions. " #pconfig: # title: 'DupRadar General Linear Model' # xLog: True # xlab: 'expression (reads/kbp)' # ylab: '% duplicate reads' # ymax: 100 # ymin: 0 # tt_label: '{point.x:.1f} reads/kbp: {point.y:,.2f}% duplicates' # xPlotLines: # - color: 'green' # dashStyle: 'LongDash' # label: # style: {color: 'green'} # text: '0.5 RPKM' # verticalAlign: 'bottom' # y: -65 # value: 0.5 # width: 1 # - color: 'red' # dashStyle: 'LongDash' # label: # style: {color: 'red'} # text: '1 read/bp' # verticalAlign: 'bottom' # y: -65 # value: 1000 # width: 1 0.0542269941977116 10.573576129726 0.127665007021575 11.8566424191612 0.183049606443346 12.4357885175483 0.20550760378134 12.626866333076 0.254647313470843 12.9874985391865 0.283446712018141 13.1709866799925 0.298953662182362 13.2630191717233 0.318522057652492 13.3732792635289 0.346140533056421 13.5190590960046 0.363504180298073 13.6054939663404 0.380952380952381 13.6887230011298 0.402576489533011 13.7872834534601 0.418235048097031 13.855750639968 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