Module	Section	Sample Name	Source
Picard	DuplicationMetrics	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/picard/markduplicates/larvae.markdup.sorted.MarkDuplicates.metrics.txt
Picard	DuplicationMetrics	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/picard/markduplicates/gonad.markdup.sorted.MarkDuplicates.metrics.txt
Picard	DuplicationMetrics	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/picard/markduplicates/heart.markdup.sorted.MarkDuplicates.metrics.txt
Picard	DuplicationMetrics	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/picard/markduplicates/ctenidia.markdup.sorted.MarkDuplicates.metrics.txt
Picard	DuplicationMetrics	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/picard/markduplicates/juvenile.markdup.sorted.MarkDuplicates.metrics.txt
Preseq	all_sections	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/preseq/larvae.ccurve.txt
Preseq	all_sections	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/preseq/juvenile.ccurve.txt
Preseq	all_sections	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/preseq/ctenidia.ccurve.txt
Preseq	all_sections	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/preseq/heart.ccurve.txt
Preseq	all_sections	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/preseq/gonad.ccurve.txt
QualiMap	rna_genome_results	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/juvenile/rnaseq_qc_results.txt
QualiMap	rna_genome_results	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/gonad/rnaseq_qc_results.txt
QualiMap	rna_genome_results	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/ctenidia/rnaseq_qc_results.txt
QualiMap	rna_genome_results	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/larvae/rnaseq_qc_results.txt
QualiMap	rna_genome_results	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/heart/rnaseq_qc_results.txt
QualiMap	rna_coverage_histogram	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/juvenile/raw_data_qualimapReport/coverage_profile_along_genes_(total).txt
QualiMap	rna_coverage_histogram	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/gonad/raw_data_qualimapReport/coverage_profile_along_genes_(total).txt
QualiMap	rna_coverage_histogram	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/ctenidia/raw_data_qualimapReport/coverage_profile_along_genes_(total).txt
QualiMap	rna_coverage_histogram	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/larvae/raw_data_qualimapReport/coverage_profile_along_genes_(total).txt
QualiMap	rna_coverage_histogram	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/qualimap/heart/raw_data_qualimapReport/coverage_profile_along_genes_(total).txt
RSeQC	read_distribution	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_distribution/gonad.read_distribution.txt
RSeQC	read_distribution	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_distribution/larvae.read_distribution.txt
RSeQC	read_distribution	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_distribution/heart.read_distribution.txt
RSeQC	read_distribution	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_distribution/ctenidia.read_distribution.txt
RSeQC	read_distribution	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_distribution/juvenile.read_distribution.txt
RSeQC	inner_distance	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/inner_distance/larvae.inner_distance_freq.txt
RSeQC	inner_distance	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/inner_distance/heart.inner_distance_freq.txt
RSeQC	inner_distance	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/inner_distance/ctenidia.inner_distance_freq.txt
RSeQC	inner_distance	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/inner_distance/gonad.inner_distance_freq.txt
RSeQC	inner_distance	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/inner_distance/juvenile.inner_distance_freq.txt
RSeQC	read_duplication	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_duplication/juvenile.pos.DupRate.xls
RSeQC	read_duplication	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_duplication/ctenidia.pos.DupRate.xls
RSeQC	read_duplication	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_duplication/gonad.pos.DupRate.xls
RSeQC	read_duplication	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_duplication/heart.pos.DupRate.xls
RSeQC	read_duplication	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/read_duplication/larvae.pos.DupRate.xls
RSeQC	junction_annotation	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_annotation/larvae.junction_annotation.log
RSeQC	junction_annotation	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_annotation/juvenile.junction_annotation.log
RSeQC	junction_annotation	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_annotation/heart.junction_annotation.log
RSeQC	junction_annotation	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_annotation/gonad.junction_annotation.log
RSeQC	junction_annotation	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_annotation/ctenidia.junction_annotation.log
RSeQC	junction_saturation	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_saturation/gonad.junctionSaturation_plot.r
RSeQC	junction_saturation	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_saturation/heart.junctionSaturation_plot.r
RSeQC	junction_saturation	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_saturation/juvenile.junctionSaturation_plot.r
RSeQC	junction_saturation	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_saturation/ctenidia.junctionSaturation_plot.r
RSeQC	junction_saturation	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/junction_saturation/larvae.junctionSaturation_plot.r
RSeQC	infer_experiment	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/infer_experiment/juvenile.infer_experiment.txt
RSeQC	infer_experiment	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/infer_experiment/ctenidia.infer_experiment.txt
RSeQC	infer_experiment	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/infer_experiment/larvae.infer_experiment.txt
RSeQC	infer_experiment	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/infer_experiment/gonad.infer_experiment.txt
RSeQC	infer_experiment	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/infer_experiment/heart.infer_experiment.txt
RSeQC	bam_stat	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/bam_stat/heart.bam_stat.txt
RSeQC	bam_stat	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/bam_stat/ctenidia.bam_stat.txt
RSeQC	bam_stat	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/bam_stat/larvae.bam_stat.txt
RSeQC	bam_stat	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/bam_stat/juvenile.bam_stat.txt
RSeQC	bam_stat	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/rseqc/bam_stat/gonad.bam_stat.txt
Salmon	all_sections	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/salmon/juvenile/libParams/flenDist.txt
Salmon	all_sections	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/salmon/gonad/libParams/flenDist.txt
Salmon	all_sections	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/salmon/ctenidia/libParams/flenDist.txt
Salmon	all_sections	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/salmon/larvae/libParams/flenDist.txt
Salmon	all_sections	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/salmon/heart/libParams/flenDist.txt
Samtools	stats	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/stats/heart.markdup.sorted.bam.stats
Samtools	stats	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/stats/ctenidia.markdup.sorted.bam.stats
Samtools	stats	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/stats/larvae.markdup.sorted.bam.stats
Samtools	stats	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/stats/juvenile.markdup.sorted.bam.stats
Samtools	stats	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/stats/gonad.markdup.sorted.bam.stats
Samtools	flagstat	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/flagstat/larvae.markdup.sorted.bam.flagstat
Samtools	flagstat	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/flagstat/juvenile.markdup.sorted.bam.flagstat
Samtools	flagstat	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/flagstat/gonad.markdup.sorted.bam.flagstat
Samtools	flagstat	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/flagstat/ctenidia.markdup.sorted.bam.flagstat
Samtools	flagstat	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/flagstat/heart.markdup.sorted.bam.flagstat
Samtools	idxstats	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/idxstats/larvae.markdup.sorted.bam.idxstats
Samtools	idxstats	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/idxstats/ctenidia.markdup.sorted.bam.idxstats
Samtools	idxstats	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/idxstats/juvenile.markdup.sorted.bam.idxstats
Samtools	idxstats	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/idxstats/gonad.markdup.sorted.bam.idxstats
Samtools	idxstats	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/samtools/idxstats/heart.markdup.sorted.bam.idxstats
STAR	SummaryLog	juvenile	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/star/juvenile.Log.final.out
STAR	SummaryLog	larvae	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/star/larvae.Log.final.out
STAR	SummaryLog	ctenidia	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/star/ctenidia.Log.final.out
STAR	SummaryLog	heart	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/star/heart.Log.final.out
STAR	SummaryLog	gonad	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/star/gonad.Log.final.out
FastQC (raw)	all_sections	heart_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/heart_1_fastqc.zip
FastQC (raw)	all_sections	juvenile_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/juvenile_1_fastqc.zip
FastQC (raw)	all_sections	gonad_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/gonad_1_fastqc.zip
FastQC (raw)	all_sections	ctenidia_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/ctenidia_1_fastqc.zip
FastQC (raw)	all_sections	heart_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/heart_2_fastqc.zip
FastQC (raw)	all_sections	gonad_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/gonad_2_fastqc.zip
FastQC (raw)	all_sections	larvae_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/larvae_2_fastqc.zip
FastQC (raw)	all_sections	juvenile_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/juvenile_2_fastqc.zip
FastQC (raw)	all_sections	larvae_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/larvae_1_fastqc.zip
FastQC (raw)	all_sections	ctenidia_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/fastqc/ctenidia_2_fastqc.zip
Cutadapt	all_sections	larvae_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/larvae_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	ctenidia_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/ctenidia_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	heart_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/heart_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	gonad_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/gonad_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	larvae_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/larvae_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	juvenile_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/juvenile_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	juvenile_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/juvenile_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	gonad_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/gonad_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	ctenidia_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/ctenidia_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	heart_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/heart_1.fastq.gz_trimming_report.txt
FastQC (trimmed)	all_sections	juvenile_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/juvenile_2_val_2_fastqc.zip
FastQC (trimmed)	all_sections	gonad_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/gonad_2_val_2_fastqc.zip
FastQC (trimmed)	all_sections	larvae_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/larvae_2_val_2_fastqc.zip
FastQC (trimmed)	all_sections	gonad_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/gonad_1_val_1_fastqc.zip
FastQC (trimmed)	all_sections	ctenidia_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/ctenidia_2_val_2_fastqc.zip
FastQC (trimmed)	all_sections	juvenile_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/juvenile_1_val_1_fastqc.zip
FastQC (trimmed)	all_sections	heart_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/heart_1_val_1_fastqc.zip
FastQC (trimmed)	all_sections	ctenidia_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/ctenidia_1_val_1_fastqc.zip
FastQC (trimmed)	all_sections	larvae_1	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/larvae_1_val_1_fastqc.zip
FastQC (trimmed)	all_sections	heart_2	/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work/52/429af6e7d80a8084c003f8911b5a80/trimgalore/fastqc/heart_2_val_2_fastqc.zip