#id: dupradar #section_name: 'DupRadar' #section_href: 'bioconductor.org/packages/release/bioc/html/dupRadar.html' #description: "provides duplication rate quality control for RNA-Seq datasets. Highly expressed genes can be expected to have a lot of duplicate reads, but high numbers of duplicates at low read counts can indicate low library complexity with technical duplication. # This plot shows the general linear models - a summary of the gene duplication distributions. " #pconfig: # title: 'DupRadar General Linear Model' # xLog: True # xlab: 'expression (reads/kbp)' # ylab: '% duplicate reads' # ymax: 100 # ymin: 0 # tt_label: '{point.x:.1f} reads/kbp: {point.y:,.2f}% duplicates' # xPlotLines: # - color: 'green' # dashStyle: 'LongDash' # label: # style: {color: 'green'} # text: '0.5 RPKM' # verticalAlign: 'bottom' # y: -65 # value: 0.5 # width: 1 # - color: 'red' # dashStyle: 'LongDash' # label: # style: {color: 'red'} # text: '1 read/bp' # verticalAlign: 'bottom' # y: -65 # value: 1000 # width: 1 0.121138703815869 18.3162486681091 0.2710027100271 20.1606800928896 0.382262996941896 20.9898572221341 0.43917435221783 21.3314238690303 0.490196078431373 21.6047798244588 0.530785562632696 21.804213721141 0.565291124929339 21.9630471540149 0.587889476778366 22.0623180012556 0.621890547263682 22.2052714304809 0.654878847413229 22.3372671956179 0.668002672010688 22.3880876142507 0.692281066112842 22.4797314548024 0.713775874375446 22.558436022345 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