#id: dupradar #section_name: 'DupRadar' #section_href: 'bioconductor.org/packages/release/bioc/html/dupRadar.html' #description: "provides duplication rate quality control for RNA-Seq datasets. Highly expressed genes can be expected to have a lot of duplicate reads, but high numbers of duplicates at low read counts can indicate low library complexity with technical duplication. # This plot shows the general linear models - a summary of the gene duplication distributions. " #pconfig: # title: 'DupRadar General Linear Model' # xLog: True # xlab: 'expression (reads/kbp)' # ylab: '% duplicate reads' # ymax: 100 # ymin: 0 # tt_label: '{point.x:.1f} reads/kbp: {point.y:,.2f}% duplicates' # xPlotLines: # - color: 'green' # dashStyle: 'LongDash' # label: # style: {color: 'green'} # text: '0.5 RPKM' # verticalAlign: 'bottom' # y: -65 # value: 0.5 # width: 1 # - color: 'red' # dashStyle: 'LongDash' # label: # style: {color: 'red'} # text: '1 read/bp' # verticalAlign: 'bottom' # y: -65 # value: 1000 # width: 1 0.0313636933885334 9.24028298691318 0.130590923930787 19.5219861552751 0.175346308960196 22.4945447364033 0.243486729973216 26.1680266789184 0.289603243556328 28.2583536920865 0.327439423706614 29.7978117841552 0.352733686067019 30.7538116314818 0.374953130858643 31.5512369984395 0.404040404040404 32.5414747320026 0.440334654337296 33.701146275078 0.454132606721163 34.1220248237882 0.490918016691213 35.1955628208315 0.508905852417303 35.6967396208764 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