#==================================================
#All numbers are READ count
#==================================================

Total records:                          88696621

QC failed:                              0
Optical/PCR duplicate:                  77708778
Non primary hits                        6564515
Unmapped reads:                         0
mapq < mapq_cut (non-unique):           335542

mapq >= mapq_cut (unique):              4087786
Read-1:                                 2038198
Read-2:                                 2049588
Reads map to '+':                       2043971
Reads map to '-':                       2043815
Non-splice reads:                       2854177
Splice reads:                           1233609
Reads mapped in proper pairs:           4067600
Proper-paired reads map to different chrom:0