## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates INPUT=[heart.sorted.bam] OUTPUT=heart.markdup.sorted.bam METRICS_FILE=heart.markdup.sorted.MarkDuplicates.metrics.txt REMOVE_DUPLICATES=false ASSUME_SORTED=true TMP_DIR=[tmp] VALIDATION_STRINGENCY=LENIENT    MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 TAG_DUPLICATE_SET_MEMBERS=false REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag CLEAR_DT=true DUPLEX_UMI=false ADD_PG_TAG_TO_READS=true DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX=<optimized capture of last three ':' separated fields as numeric values> OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 MAX_OPTICAL_DUPLICATE_SET_SIZE=300000 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Mar 25 09:17:09 GMT 2022

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	73960	66278065	12150986	0	62141	33513399	0	0.505835	40806176

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	non_optical_sets
1.0	1	20048702	20048702
2.0	1.197066	7384539	7384539
3.0	1.235901	2640421	2640421
4.0	1.243554	1039963	1039963
5.0	1.245062	490909	490909
6.0	1.245359	276657	276657
7.0	1.245418	176939	176939
8.0	1.24543	122991	122991
9.0	1.245432	90157	90157
10.0	1.245432	68413	68413
11.0	1.245432	54095	54095
12.0	1.245432	43110	43110
13.0	1.245432	35541	35541
14.0	1.245432	29513	29513
15.0	1.245432	24976	24976
16.0	1.245432	21168	21168
17.0	1.245432	18257	18257
18.0	1.245432	15990	15990
19.0	1.245432	14104	14104
20.0	1.245432	12253	12253
21.0	1.245432	11035	11035
22.0	1.245432	9798	9798
23.0	1.245432	8902	8902
24.0	1.245432	7835	7835
25.0	1.245432	6926	6926
26.0	1.245432	6528	6528
27.0	1.245432	5886	5886
28.0	1.245432	5189	5189
29.0	1.245432	4923	4923
30.0	1.245432	4453	4453
31.0	1.245432	4221	4221
32.0	1.245432	3827	3827
33.0	1.245432	3482	3482
34.0	1.245432	3277	3277
35.0	1.245432	3101	3101
36.0	1.245432	2910	2910
37.0	1.245432	2733	2733
38.0	1.245432	2424	2424
39.0	1.245432	2362	2362
40.0	1.245432	2219	2219
41.0	1.245432	2058	2058
42.0	1.245432	1933	1933
43.0	1.245432	1809	1809
44.0	1.245432	1789	1789
45.0	1.245432	1611	1611
46.0	1.245432	1558	1558
47.0	1.245432	1455	1455
48.0	1.245432	1400	1400
49.0	1.245432	1334	1334
50.0	1.245432	1212	1212
51.0	1.245432	1195	1195
52.0	1.245432	1132	1132
53.0	1.245432	1101	1101
54.0	1.245432	1056	1056
55.0	1.245432	936	936
56.0	1.245432	898	898
57.0	1.245432	894	894
58.0	1.245432	860	860
59.0	1.245432	804	804
60.0	1.245432	797	797
61.0	1.245432	740	740
62.0	1.245432	754	754
63.0	1.245432	722	722
64.0	1.245432	619	619
65.0	1.245432	584	584
66.0	1.245432	612	612
67.0	1.245432	608	608
68.0	1.245432	577	577
69.0	1.245432	520	520
70.0	1.245432	559	559
71.0	1.245432	535	535
72.0	1.245432	473	473
73.0	1.245432	473	473
74.0	1.245432	424	424
75.0	1.245432	444	444
76.0	1.245432	458	458
77.0	1.245432	434	434
78.0	1.245432	452	452
79.0	1.245432	408	408
80.0	1.245432	421	421
81.0	1.245432	339	339
82.0	1.245432	325	325
83.0	1.245432	377	377
84.0	1.245432	300	300
85.0	1.245432	333	333
86.0	1.245432	284	284
87.0	1.245432	314	314
88.0	1.245432	298	298
89.0	1.245432	290	290
90.0	1.245432	280	280
91.0	1.245432	266	266
92.0	1.245432	256	256
93.0	1.245432	257	257
94.0	1.245432	268	268
95.0	1.245432	224	224
96.0	1.245432	218	218
97.0	1.245432	224	224
98.0	1.245432	243	243
99.0	1.245432	199	199
100.0	1.245432	176	176
101.0	0	225	225
102.0	0	206	206
103.0	0	190	190
104.0	0	185	185
105.0	0	186	186
106.0	0	193	193
107.0	0	184	184
108.0	0	194	194
109.0	0	154	154
110.0	0	173	173
111.0	0	177	177
112.0	0	150	150
113.0	0	165	165
114.0	0	145	145
115.0	0	168	168
116.0	0	121	121
117.0	0	123	123
118.0	0	144	144
119.0	0	129	129
120.0	0	115	115
121.0	0	124	124
122.0	0	122	122
123.0	0	125	125
124.0	0	121	121
125.0	0	97	97
126.0	0	116	116
127.0	0	108	108
128.0	0	120	120
129.0	0	97	97
130.0	0	104	104
131.0	0	95	95
132.0	0	100	100
133.0	0	108	108
134.0	0	89	89
135.0	0	101	101
136.0	0	99	99
137.0	0	88	88
138.0	0	86	86
139.0	0	83	83
140.0	0	90	90
141.0	0	91	91
142.0	0	74	74
143.0	0	100	100
144.0	0	78	78
145.0	0	85	85
146.0	0	70	70
147.0	0	72	72
148.0	0	60	60
149.0	0	72	72
150.0	0	80	80
151.0	0	58	58
152.0	0	60	60
153.0	0	55	55
154.0	0	55	55
155.0	0	66	66
156.0	0	58	58
157.0	0	67	67
158.0	0	62	62
159.0	0	61	61
160.0	0	61	61
161.0	0	61	61
162.0	0	58	58
163.0	0	40	40
164.0	0	55	55
165.0	0	61	61
166.0	0	61	61
167.0	0	62	62
168.0	0	48	48
169.0	0	47	47
170.0	0	64	64
171.0	0	40	40
172.0	0	41	41
173.0	0	46	46
174.0	0	54	54
175.0	0	41	41
176.0	0	40	40
177.0	0	42	42
178.0	0	50	50
179.0	0	44	44
180.0	0	56	56
181.0	0	38	38
182.0	0	46	46
183.0	0	43	43
184.0	0	32	32
185.0	0	45	45
186.0	0	46	46
187.0	0	31	31
188.0	0	29	29
189.0	0	31	31
190.0	0	36	36
191.0	0	31	31
192.0	0	38	38
193.0	0	42	42
194.0	0	38	38
195.0	0	39	39
196.0	0	38	38
197.0	0	35	35
198.0	0	35	35
199.0	0	26	26
200.0	0	44	44
201.0	0	28	28
202.0	0	30	30
203.0	0	21	21
204.0	0	24	24
205.0	0	37	37
206.0	0	15	15
207.0	0	22	22
208.0	0	33	33
209.0	0	31	31
210.0	0	27	27
211.0	0	27	27
212.0	0	30	30
213.0	0	28	28
214.0	0	27	27
215.0	0	26	26
216.0	0	21	21
217.0	0	24	24
218.0	0	28	28
219.0	0	24	24
220.0	0	18	18
221.0	0	15	15
222.0	0	24	24
223.0	0	24	24
224.0	0	20	20
225.0	0	28	28
226.0	0	14	14
227.0	0	24	24
228.0	0	19	19
229.0	0	20	20
230.0	0	19	19
231.0	0	22	22
232.0	0	23	23
233.0	0	15	15
234.0	0	21	21
235.0	0	23	23
236.0	0	19	19
237.0	0	17	17
238.0	0	14	14
239.0	0	18	18
240.0	0	20	20
241.0	0	19	19
242.0	0	14	14
243.0	0	14	14
244.0	0	20	20
245.0	0	17	17
246.0	0	17	17
247.0	0	15	15
248.0	0	16	16
249.0	0	23	23
250.0	0	16	16
251.0	0	20	20
252.0	0	15	15
253.0	0	16	16
254.0	0	17	17
255.0	0	17	17
256.0	0	17	17
257.0	0	12	12
258.0	0	25	25
259.0	0	13	13
260.0	0	15	15
261.0	0	10	10
262.0	0	13	13
263.0	0	20	20
264.0	0	15	15
265.0	0	16	16
266.0	0	11	11
267.0	0	17	17
268.0	0	11	11
269.0	0	12	12
270.0	0	7	7
271.0	0	17	17
272.0	0	9	9
273.0	0	8	8
274.0	0	20	20
275.0	0	15	15
276.0	0	14	14
277.0	0	16	16
278.0	0	9	9
279.0	0	12	12
280.0	0	8	8
281.0	0	12	12
282.0	0	11	11
283.0	0	16	16
284.0	0	10	10
285.0	0	10	10
286.0	0	14	14
287.0	0	13	13
288.0	0	9	9
289.0	0	11	11
290.0	0	9	9
291.0	0	11	11
292.0	0	10	10
293.0	0	6	6
294.0	0	11	11
295.0	0	8	8
296.0	0	10	10
297.0	0	9	9
298.0	0	10	10
299.0	0	12	12
300.0	0	6	6
301.0	0	13	13
302.0	0	13	13
303.0	0	7	7
304.0	0	10	10
305.0	0	9	9
306.0	0	8	8
307.0	0	8	8
308.0	0	11	11
309.0	0	11	11
310.0	0	12	12
311.0	0	5	5
312.0	0	6	6
313.0	0	7	7
314.0	0	5	5
315.0	0	16	16
316.0	0	12	12
317.0	0	10	10
318.0	0	8	8
319.0	0	5	5
320.0	0	10	10
321.0	0	9	9
322.0	0	11	11
323.0	0	10	10
324.0	0	10	10
325.0	0	5	5
326.0	0	5	5
327.0	0	4	4
328.0	0	6	6
329.0	0	8	8
330.0	0	11	11
331.0	0	7	7
332.0	0	6	6
333.0	0	4	4
334.0	0	11	11
335.0	0	2	2
336.0	0	9	9
337.0	0	6	6
338.0	0	8	8
339.0	0	4	4
340.0	0	6	6
341.0	0	8	8
342.0	0	7	7
343.0	0	7	7
344.0	0	13	13
345.0	0	8	8
346.0	0	9	9
347.0	0	10	10
348.0	0	7	7
349.0	0	6	6
350.0	0	3	3
351.0	0	9	9
352.0	0	4	4
353.0	0	10	10
354.0	0	10	10
355.0	0	3	3
356.0	0	4	4
357.0	0	8	8
358.0	0	3	3
359.0	0	6	6
360.0	0	7	7
361.0	0	12	12
362.0	0	3	3
363.0	0	9	9
364.0	0	10	10
365.0	0	8	8
366.0	0	5	5
367.0	0	6	6
368.0	0	7	7
369.0	0	8	8
370.0	0	10	10
371.0	0	4	4
372.0	0	4	4
373.0	0	7	7
374.0	0	13	13
375.0	0	8	8
376.0	0	3	3
377.0	0	2	2
378.0	0	10	10
379.0	0	7	7
380.0	0	4	4
381.0	0	8	8
382.0	0	11	11
383.0	0	6	6
384.0	0	5	5
385.0	0	3	3
386.0	0	9	9
387.0	0	3	3
388.0	0	2	2
389.0	0	6	6
390.0	0	4	4
391.0	0	8	8
392.0	0	5	5
393.0	0	3	3
395.0	0	2	2
396.0	0	4	4
397.0	0	5	5
398.0	0	5	5
399.0	0	3	3
400.0	0	2	2
401.0	0	8	8
402.0	0	3	3
403.0	0	4	4
404.0	0	2	2
405.0	0	4	4
406.0	0	3	3
407.0	0	5	5
408.0	0	5	5
409.0	0	4	4
410.0	0	1	1
411.0	0	6	6
412.0	0	3	3
413.0	0	3	3
414.0	0	2	2
415.0	0	5	5
416.0	0	3	3
417.0	0	2	2
418.0	0	3	3
419.0	0	2	2
420.0	0	3	3
421.0	0	5	5
423.0	0	2	2
424.0	0	4	4
425.0	0	5	5
426.0	0	4	4
427.0	0	6	6
428.0	0	6	6
429.0	0	2	2
430.0	0	8	8
431.0	0	5	5
432.0	0	4	4
433.0	0	3	3
434.0	0	4	4
435.0	0	7	7
436.0	0	3	3
437.0	0	6	6
438.0	0	2	2
439.0	0	5	5
440.0	0	3	3
441.0	0	5	5
442.0	0	4	4
443.0	0	5	5
444.0	0	4	4
445.0	0	3	3
446.0	0	1	1
447.0	0	1	1
448.0	0	4	4
449.0	0	2	2
450.0	0	6	6
451.0	0	4	4
452.0	0	5	5
453.0	0	4	4
454.0	0	4	4
455.0	0	1	1
456.0	0	3	3
457.0	0	6	6
458.0	0	3	3
459.0	0	1	1
460.0	0	6	6
461.0	0	1	1
462.0	0	2	2
463.0	0	3	3
464.0	0	1	1
465.0	0	2	2
466.0	0	4	4
467.0	0	2	2
468.0	0	2	2
469.0	0	1	1
470.0	0	4	4
471.0	0	3	3
472.0	0	4	4
473.0	0	3	3
474.0	0	6	6
475.0	0	4	4
476.0	0	5	5
477.0	0	3	3
478.0	0	7	7
479.0	0	1	1
480.0	0	5	5
482.0	0	4	4
483.0	0	4	4
484.0	0	5	5
485.0	0	4	4
486.0	0	5	5
487.0	0	2	2
488.0	0	1	1
489.0	0	4	4
490.0	0	1	1
491.0	0	1	1
492.0	0	1	1
493.0	0	2	2
494.0	0	3	3
495.0	0	1	1
496.0	0	1	1
497.0	0	3	3
498.0	0	3	3
499.0	0	4	4
500.0	0	4	4
501.0	0	3	3
502.0	0	1	1
503.0	0	2	2
505.0	0	4	4
506.0	0	2	2
507.0	0	1	1
508.0	0	1	1
509.0	0	4	4
510.0	0	4	4
511.0	0	4	4
512.0	0	4	4
513.0	0	5	5
514.0	0	1	1
515.0	0	2	2
516.0	0	1	1
517.0	0	2	2
519.0	0	1	1
520.0	0	1	1
521.0	0	1	1
523.0	0	7	7
524.0	0	2	2
525.0	0	1	1
526.0	0	1	1
527.0	0	1	1
528.0	0	2	2
529.0	0	1	1
530.0	0	3	3
531.0	0	1	1
532.0	0	3	3
534.0	0	1	1
535.0	0	1	1
536.0	0	1	1
537.0	0	3	3
538.0	0	1	1
539.0	0	1	1
540.0	0	1	1
541.0	0	6	6
542.0	0	2	2
543.0	0	1	1
545.0	0	3	3
547.0	0	4	4
550.0	0	5	5
551.0	0	2	2
552.0	0	1	1
554.0	0	2	2
555.0	0	2	2
557.0	0	4	4
558.0	0	1	1
560.0	0	2	2
561.0	0	3	3
563.0	0	1	1
565.0	0	3	3
566.0	0	1	1
568.0	0	1	1
569.0	0	3	3
570.0	0	3	3
572.0	0	1	1
574.0	0	5	5
575.0	0	2	2
576.0	0	2	2
577.0	0	2	2
578.0	0	1	1
579.0	0	3	3
581.0	0	1	1
582.0	0	1	1
583.0	0	1	1
584.0	0	1	1
585.0	0	2	2
586.0	0	1	1
587.0	0	1	1
588.0	0	1	1
589.0	0	1	1
592.0	0	2	2
593.0	0	1	1
594.0	0	3	3
595.0	0	2	2
597.0	0	1	1
598.0	0	1	1
599.0	0	2	2
600.0	0	2	2
601.0	0	5	5
603.0	0	2	2
605.0	0	1	1
607.0	0	1	1
609.0	0	1	1
610.0	0	3	3
611.0	0	2	2
612.0	0	2	2
613.0	0	2	2
614.0	0	2	2
616.0	0	1	1
617.0	0	4	4
618.0	0	3	3
619.0	0	3	3
620.0	0	1	1
621.0	0	2	2
622.0	0	2	2
623.0	0	2	2
624.0	0	1	1
625.0	0	1	1
627.0	0	1	1
629.0	0	1	1
630.0	0	2	2
632.0	0	2	2
634.0	0	2	2
637.0	0	2	2
638.0	0	2	2
639.0	0	2	2
643.0	0	3	3
648.0	0	1	1
651.0	0	2	2
652.0	0	2	2
653.0	0	1	1
655.0	0	2	2
660.0	0	1	1
671.0	0	2	2
673.0	0	1	1
674.0	0	1	1
675.0	0	1	1
676.0	0	2	2
680.0	0	1	1
682.0	0	2	2
683.0	0	1	1
684.0	0	1	1
688.0	0	1	1
689.0	0	2	2
690.0	0	1	1
691.0	0	1	1
694.0	0	1	1
695.0	0	1	1
696.0	0	2	2
697.0	0	1	1
702.0	0	1	1
703.0	0	1	1
705.0	0	1	1
708.0	0	5	5
709.0	0	1	1
712.0	0	1	1
713.0	0	1	1
717.0	0	3	3
718.0	0	1	1
720.0	0	1	1
722.0	0	2	2
725.0	0	2	2
727.0	0	1	1
729.0	0	2	2
730.0	0	1	1
732.0	0	2	2
733.0	0	1	1
734.0	0	1	1
737.0	0	1	1
738.0	0	1	1
739.0	0	3	3
743.0	0	1	1
744.0	0	3	3
749.0	0	1	1
752.0	0	1	1
757.0	0	2	2
758.0	0	2	2
759.0	0	2	2
760.0	0	1	1
763.0	0	1	1
764.0	0	3	3
765.0	0	1	1
766.0	0	1	1
774.0	0	1	1
776.0	0	1	1
777.0	0	2	2
778.0	0	2	2
781.0	0	2	2
782.0	0	1	1
783.0	0	1	1
786.0	0	1	1
789.0	0	1	1
790.0	0	1	1
791.0	0	1	1
793.0	0	1	1
794.0	0	1	1
795.0	0	1	1
801.0	0	1	1
803.0	0	1	1
807.0	0	1	1
808.0	0	1	1
817.0	0	1	1
818.0	0	2	2
825.0	0	3	3
827.0	0	3	3
828.0	0	1	1
831.0	0	2	2
834.0	0	2	2
836.0	0	1	1
838.0	0	1	1
839.0	0	1	1
841.0	0	1	1
846.0	0	1	1
850.0	0	2	2
851.0	0	1	1
852.0	0	1	1
858.0	0	1	1
859.0	0	1	1
862.0	0	1	1
865.0	0	1	1
867.0	0	1	1
868.0	0	1	1
872.0	0	1	1
877.0	0	2	2
882.0	0	1	1
887.0	0	1	1
889.0	0	1	1
891.0	0	2	2
895.0	0	1	1
896.0	0	1	1
907.0	0	1	1
913.0	0	1	1
915.0	0	1	1
916.0	0	1	1
920.0	0	1	1
924.0	0	1	1
927.0	0	2	2
934.0	0	1	1
939.0	0	1	1
940.0	0	1	1
943.0	0	2	2
946.0	0	1	1
949.0	0	1	1
950.0	0	1	1
952.0	0	1	1
953.0	0	1	1
961.0	0	1	1
964.0	0	1	1
967.0	0	1	1
969.0	0	1	1
970.0	0	1	1
972.0	0	2	2
979.0	0	1	1
983.0	0	1	1
986.0	0	1	1
992.0	0	1	1
994.0	0	1	1
995.0	0	1	1
999.0	0	1	1
1000.0	0	1	1
1003.0	0	1	1
1012.0	0	1	1
1015.0	0	2	2
1016.0	0	1	1
1023.0	0	1	1
1027.0	0	1	1
1034.0	0	1	1
1036.0	0	1	1
1051.0	0	2	2
1055.0	0	1	1
1057.0	0	1	1
1062.0	0	1	1
1067.0	0	1	1
1070.0	0	1	1
1071.0	0	1	1
1072.0	0	1	1
1087.0	0	1	1
1092.0	0	1	1
1095.0	0	1	1
1105.0	0	1	1
1107.0	0	1	1
1115.0	0	1	1
1116.0	0	1	1
1120.0	0	1	1
1121.0	0	1	1
1125.0	0	1	1
1128.0	0	1	1
1142.0	0	1	1
1144.0	0	1	1
1147.0	0	1	1
1149.0	0	1	1
1150.0	0	1	1
1152.0	0	1	1
1156.0	0	1	1
1164.0	0	1	1
1165.0	0	1	1
1172.0	0	2	2
1181.0	0	1	1
1198.0	0	1	1
1200.0	0	1	1
1203.0	0	1	1
1213.0	0	1	1
1214.0	0	1	1
1215.0	0	1	1
1224.0	0	1	1
1228.0	0	2	2
1230.0	0	1	1
1237.0	0	1	1
1240.0	0	1	1
1265.0	0	1	1
1274.0	0	1	1
1316.0	0	1	1
1329.0	0	2	2
1354.0	0	1	1
1355.0	0	1	1
1400.0	0	1	1
1407.0	0	1	1
1433.0	0	1	1
1456.0	0	1	1
1475.0	0	1	1
1495.0	0	1	1
1517.0	0	1	1
1519.0	0	1	1
1528.0	0	1	1
1551.0	0	1	1
1580.0	0	1	1
1593.0	0	1	1
1595.0	0	1	1
1603.0	0	1	1
1623.0	0	1	1
1631.0	0	1	1
1639.0	0	1	1
1718.0	0	1	1
1787.0	0	1	1
1788.0	0	1	1
1791.0	0	1	1
1833.0	0	1	1
1875.0	0	1	1
1880.0	0	1	1
1905.0	0	1	1
1915.0	0	1	1
1927.0	0	1	1
1937.0	0	1	1
1975.0	0	1	1
2027.0	0	1	1
2117.0	0	1	1
2231.0	0	1	1
2271.0	0	1	1
2324.0	0	1	1
2357.0	0	1	1
2382.0	0	1	1
2467.0	0	1	1
2641.0	0	1	1
2695.0	0	1	1
2769.0	0	1	1
3347.0	0	1	1
3425.0	0	1	1
3635.0	0	1	1
3900.0	0	1	1
5597.0	0	1	1
5870.0	0	1	1