Nextflow workflow report

[voluminous_visvesvaraya]

Run times

24-Mar-2022 07:29:13 - 26-Mar-2022 16:17:15 (duration: 2d 8h 48m 2s)

  193 succeeded  

  0 cached  

  0 ignored  

  0 failed  

Nextflow command

nextflow run /gscratch/srlab/programs/nf-core-rnaseq-3.6/workflow -profile singularity -c /gscratch/srlab/programs/nf-core-rnaseq-3.6/configs/conf/base-srlab_500GB_node.config --input sample_sheet-2666621.csv --outdir /gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues --multiqc_title 20220321-pgen-nextflow_rnaseq-tissues-2666621 --fasta /gscratch/srlab/sam/data/P_generosa/genomes/Panopea-generosa-v1.0.fa --gff /gscratch/srlab/sam/data/P_generosa/genomes/Panopea-generosa-v1.0.a4_biotype-trna_strand_converted-no_RNAmmer.gff --save_reference --gtf_extra_attributes gene_name --gtf_group_features gene_id --featurecounts_group_type gene_biotype --featurecounts_feature_type exon --trim_nextseq 20 --save_trimmed --aligner star_salmon --pseudo_aligner salmon --min_mapped_reads 5 --save_align_intermeds --rseqc_modules bam_stat,inner_distance,infer_experiment,junction_annotation,junction_saturation,read_distribution,read_duplication

CPU-Hours

1'588.9

Launch directory

/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues

Work directory

/gscratch/scrubbed/samwhite/outputs/20220323-pgen-nextflow_rnaseq-tissues/work

Project directory

/gscratch/srlab/programs/nf-core-rnaseq-3.6/workflow

Script name

main.nf

Script ID

6b989c60f8b09b62bd16a252d522ee2e

Workflow session

3fc1d038-7437-4f7c-9f34-ce624ec3daca

Workflow profile

singularity

Nextflow version

version 21.10.6, build 5660 (21-12-2021 16:55 UTC)