FastQCFastQC Report
Thu 24 Mar 2022
ctenidia_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamectenidia_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60302305
Sequences flagged as poor quality0
Sequence length35-151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG26806004.445269546495776Illumina Single End PCR Primer 1 (100% over 50bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT3222210.5343427585396611Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN699180.11594581666488538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)