Alignment of C.virginica adult gonad exposed to OA RNAseq to NCBI genome GCF_002022765.2 using HISAT2 on Mox.

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FILES:


- 20210131-cvir-hisat2_hisat2.err: HISAT2 standard error output. Contains alignments stats.

- 20210131-cvir-hisat2.sorted.bam: Sorted BAM file.

- 20210131-cvir-hisat2.sorted.bam.bai: BAM index file. Useful for IGV.

- 20220131_cvir_hisat2-GCF_002022765.2_adult-oa-gonad.sh: SLURM script used to run job on Mox.

- checksums.md5: MD5 checksums of all files in this directory.

- input_fastqs_checksums.md5: MD5 checksusm of all FASTQ files used as input.

- program_options.log: Log of help menus/optinos for programs used.

- slurm-2550054.out: Standard output log file generated by the SLURM scheduler.

- system_path.log: Log of all items in system $PATH at runtime.