A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
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Report generated on 2021-07-14, 11:20 based on data in:
/gscratch/scrubbed/samwhite/outputs/20210714_cvir_gonad_RNAseq_fastp_trimming
General Statistics
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fastp
fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)
Filtered Reads
Filtering statistics of sampled reads.
Number of Reads
Percentages
Created with Highcharts 5.0.6 # Reads Chart context menu Export Plot Fastp: Filtered Reads Passed Filter Low Quality Too Many N Too short S12M_R1 S16F_R1 S22F_R1 S29F_R1 S35F_R1 S39F_R1 S41F_R1 S48M_R1 S52F_R1 S54F_R1 S64M_R1 S76F_R1 S7M_R1 0 10M 20M 30M 40M 50M 60M 70M 80M 90M 100M 110M 120M 130M 140M 15… 150M Created with MultiQC
Duplication Rates
Duplication rates of sampled reads.
Y-Limits: on
Created with Highcharts 5.0.6 Duplication level Read percent Chart context menu Export Plot Fastp: Duplication Rate 2 4 6 8 10 12 14 16 18 20 22 24 26 28 30 0% 20% 40% 60% 80% 100% Created with MultiQC
Insert Sizes
Insert size estimation of sampled reads.
Y-Limits: on
Created with Highcharts 5.0.6 Insert size Read percent Chart context menu Export Plot Fastp: Insert Size Distribution 0 25 50 75 100 125 150 175 200 225 250 0% 0.25% 0.5% 0.75% 1% 1.25% 1.5% Created with MultiQC
Sequence Quality
Average sequencing quality over each base of all reads.
Y-Limits: on
Read 1: Before filtering
Read 1: After filtering
Read 2: Before filtering
Read 2: After filtering
Created with Highcharts 5.0.6 Read Position R1 Before filtering: Sequence Quality Chart context menu Export Plot Fastp: Sequence Quality 0 20 40 60 80 100 120 140 0 5 10 15 20 25 30 35 40 Created with MultiQC
GC Content
Average GC content over each base of all reads.
Y-Limits: on
Read 1: Before filtering
Read 1: After filtering
Read 2: Before filtering
Read 2: After filtering
Created with Highcharts 5.0.6 Read Position R1 Before filtering: Base Content Percent Chart context menu Export Plot Fastp: Read GC Content 0 20 40 60 80 100 120 140 0% 20% 40% 60% 80% 100% Created with MultiQC
N content
Average N content over each base of all reads.
Y-Limits: on
Read 1: Before filtering
Read 1: After filtering
Read 2: Before filtering
Read 2: After filtering
Created with Highcharts 5.0.6 Read Position R1 Before filtering: Base Content Percent Chart context menu Export Plot Fastp: Read N Content 0 20 40 60 80 100 120 140 0% 1% 2% 3% 4% 5% 6% Created with MultiQC