Sample	command
S12M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S12M_R1.fastq.gz --in2 S12M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S12M_R1.fastp-trim.20210714.report.html --json S12M_R1.fastp-trim.20210714.report.json --out1 S12M_R1.fastp-trim.20210714.fq.gz --out2 S12M_R2.fastp-trim.20210714.fq.gz 
S13M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S13M_R1.fastq.gz --in2 S13M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S13M_R1.fastp-trim.20210714.report.html --json S13M_R1.fastp-trim.20210714.report.json --out1 S13M_R1.fastp-trim.20210714.fq.gz --out2 S13M_R2.fastp-trim.20210714.fq.gz 
S16F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S16F_R1.fastq.gz --in2 S16F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S16F_R1.fastp-trim.20210714.report.html --json S16F_R1.fastp-trim.20210714.report.json --out1 S16F_R1.fastp-trim.20210714.fq.gz --out2 S16F_R2.fastp-trim.20210714.fq.gz 
S19F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S19F_R1.fastq.gz --in2 S19F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S19F_R1.fastp-trim.20210714.report.html --json S19F_R1.fastp-trim.20210714.report.json --out1 S19F_R1.fastp-trim.20210714.fq.gz --out2 S19F_R2.fastp-trim.20210714.fq.gz 
S22F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S22F_R1.fastq.gz --in2 S22F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S22F_R1.fastp-trim.20210714.report.html --json S22F_R1.fastp-trim.20210714.report.json --out1 S22F_R1.fastp-trim.20210714.fq.gz --out2 S22F_R2.fastp-trim.20210714.fq.gz 
S23M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S23M_R1.fastq.gz --in2 S23M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S23M_R1.fastp-trim.20210714.report.html --json S23M_R1.fastp-trim.20210714.report.json --out1 S23M_R1.fastp-trim.20210714.fq.gz --out2 S23M_R2.fastp-trim.20210714.fq.gz 
S29F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S29F_R1.fastq.gz --in2 S29F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S29F_R1.fastp-trim.20210714.report.html --json S29F_R1.fastp-trim.20210714.report.json --out1 S29F_R1.fastp-trim.20210714.fq.gz --out2 S29F_R2.fastp-trim.20210714.fq.gz 
S31M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S31M_R1.fastq.gz --in2 S31M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S31M_R1.fastp-trim.20210714.report.html --json S31M_R1.fastp-trim.20210714.report.json --out1 S31M_R1.fastp-trim.20210714.fq.gz --out2 S31M_R2.fastp-trim.20210714.fq.gz 
S35F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S35F_R1.fastq.gz --in2 S35F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S35F_R1.fastp-trim.20210714.report.html --json S35F_R1.fastp-trim.20210714.report.json --out1 S35F_R1.fastp-trim.20210714.fq.gz --out2 S35F_R2.fastp-trim.20210714.fq.gz 
S36F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S36F_R1.fastq.gz --in2 S36F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S36F_R1.fastp-trim.20210714.report.html --json S36F_R1.fastp-trim.20210714.report.json --out1 S36F_R1.fastp-trim.20210714.fq.gz --out2 S36F_R2.fastp-trim.20210714.fq.gz 
S39F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S39F_R1.fastq.gz --in2 S39F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S39F_R1.fastp-trim.20210714.report.html --json S39F_R1.fastp-trim.20210714.report.json --out1 S39F_R1.fastp-trim.20210714.fq.gz --out2 S39F_R2.fastp-trim.20210714.fq.gz 
S3F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S3F_R1.fastq.gz --in2 S3F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S3F_R1.fastp-trim.20210714.report.html --json S3F_R1.fastp-trim.20210714.report.json --out1 S3F_R1.fastp-trim.20210714.fq.gz --out2 S3F_R2.fastp-trim.20210714.fq.gz 
S41F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S41F_R1.fastq.gz --in2 S41F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S41F_R1.fastp-trim.20210714.report.html --json S41F_R1.fastp-trim.20210714.report.json --out1 S41F_R1.fastp-trim.20210714.fq.gz --out2 S41F_R2.fastp-trim.20210714.fq.gz 
S44F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S44F_R1.fastq.gz --in2 S44F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S44F_R1.fastp-trim.20210714.report.html --json S44F_R1.fastp-trim.20210714.report.json --out1 S44F_R1.fastp-trim.20210714.fq.gz --out2 S44F_R2.fastp-trim.20210714.fq.gz 
S48M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S48M_R1.fastq.gz --in2 S48M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S48M_R1.fastp-trim.20210714.report.html --json S48M_R1.fastp-trim.20210714.report.json --out1 S48M_R1.fastp-trim.20210714.fq.gz --out2 S48M_R2.fastp-trim.20210714.fq.gz 
S50F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S50F_R1.fastq.gz --in2 S50F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S50F_R1.fastp-trim.20210714.report.html --json S50F_R1.fastp-trim.20210714.report.json --out1 S50F_R1.fastp-trim.20210714.fq.gz --out2 S50F_R2.fastp-trim.20210714.fq.gz 
S52F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S52F_R1.fastq.gz --in2 S52F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S52F_R1.fastp-trim.20210714.report.html --json S52F_R1.fastp-trim.20210714.report.json --out1 S52F_R1.fastp-trim.20210714.fq.gz --out2 S52F_R2.fastp-trim.20210714.fq.gz 
S53F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S53F_R1.fastq.gz --in2 S53F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S53F_R1.fastp-trim.20210714.report.html --json S53F_R1.fastp-trim.20210714.report.json --out1 S53F_R1.fastp-trim.20210714.fq.gz --out2 S53F_R2.fastp-trim.20210714.fq.gz 
S54F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S54F_R1.fastq.gz --in2 S54F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S54F_R1.fastp-trim.20210714.report.html --json S54F_R1.fastp-trim.20210714.report.json --out1 S54F_R1.fastp-trim.20210714.fq.gz --out2 S54F_R2.fastp-trim.20210714.fq.gz 
S59M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S59M_R1.fastq.gz --in2 S59M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S59M_R1.fastp-trim.20210714.report.html --json S59M_R1.fastp-trim.20210714.report.json --out1 S59M_R1.fastp-trim.20210714.fq.gz --out2 S59M_R2.fastp-trim.20210714.fq.gz 
S64M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S64M_R1.fastq.gz --in2 S64M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S64M_R1.fastp-trim.20210714.report.html --json S64M_R1.fastp-trim.20210714.report.json --out1 S64M_R1.fastp-trim.20210714.fq.gz --out2 S64M_R2.fastp-trim.20210714.fq.gz 
S6M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S6M_R1.fastq.gz --in2 S6M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S6M_R1.fastp-trim.20210714.report.html --json S6M_R1.fastp-trim.20210714.report.json --out1 S6M_R1.fastp-trim.20210714.fq.gz --out2 S6M_R2.fastp-trim.20210714.fq.gz 
S76F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S76F_R1.fastq.gz --in2 S76F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S76F_R1.fastp-trim.20210714.report.html --json S76F_R1.fastp-trim.20210714.report.json --out1 S76F_R1.fastp-trim.20210714.fq.gz --out2 S76F_R2.fastp-trim.20210714.fq.gz 
S77F_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S77F_R1.fastq.gz --in2 S77F_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S77F_R1.fastp-trim.20210714.report.html --json S77F_R1.fastp-trim.20210714.report.json --out1 S77F_R1.fastp-trim.20210714.fq.gz --out2 S77F_R2.fastp-trim.20210714.fq.gz 
S7M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S7M_R1.fastq.gz --in2 S7M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S7M_R1.fastp-trim.20210714.report.html --json S7M_R1.fastp-trim.20210714.report.json --out1 S7M_R1.fastp-trim.20210714.fq.gz --out2 S7M_R2.fastp-trim.20210714.fq.gz 
S9M_R1	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 S9M_R1.fastq.gz --in2 S9M_R2.fastq.gz --detect_adapter_for_pe --thread 40 --html S9M_R1.fastp-trim.20210714.report.html --json S9M_R1.fastp-trim.20210714.report.json --out1 S9M_R1.fastp-trim.20210714.fq.gz --out2 S9M_R2.fastp-trim.20210714.fq.gz