Creating specified working directory /gscratch/scrubbed/samwhite/outputs/20210712_pgen_blobtools_Panopea-generosa-v1.0/diamond_blastp.
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 30
Rules claiming more threads will be scaled down.
Job counts:
	count	jobs
	1	all
	1	extract_busco_genes
	1	run_diamond_blastp
	3
Select jobs to execute...

[Wed Jul 28 17:58:34 2021]
rule extract_busco_genes:
    input: ../busco/Panopea_generosa_v1.busco.archaea_odb10/full_table.tsv.gz, ../busco/Panopea_generosa_v1.busco.bacteria_odb10/full_table.tsv.gz, ../busco/Panopea_generosa_v1.busco.eukaryota_odb10/full_table.tsv.gz
    output: Panopea_generosa_v1.busco_genes.fasta
    log: logs/Panopea_generosa_v1/extract_busco_genes.log
    jobid: 2
    benchmark: logs/Panopea_generosa_v1/extract_busco_genes.benchmark.txt
    wildcards: assembly=Panopea_generosa_v1

/gscratch/srlab/programs/anaconda3/envs/btk_env/bin/python3.8 /gscratch/scrubbed/samwhite/outputs/20210712_pgen_blobtools_Panopea-generosa-v1.0/diamond_blastp/.snakemake/scripts/tmplgckwgdo.extract_busco_genes.py
[Wed Jul 28 17:58:35 2021]
Finished job 2.
1 of 3 steps (33%) done
Select jobs to execute...

[Wed Jul 28 17:58:35 2021]
rule run_diamond_blastp:
    input: Panopea_generosa_v1.busco_genes.fasta, /gscratch/srlab/blastdbs/20210401_uniprot_btk/reference_proteomes.dmnd
    output: Panopea_generosa_v1.diamond.busco_genes.out
    log: logs/Panopea_generosa_v1/run_diamond_blastp.log
    jobid: 1
    benchmark: logs/Panopea_generosa_v1/run_diamond_blastp.benchmark.txt
    wildcards: assembly=Panopea_generosa_v1
    threads: 30

diamond blastp             --query Panopea_generosa_v1.busco_genes.fasta             --db /gscratch/srlab/blastdbs/20210401_uniprot_btk/reference_proteomes.dmnd             --outfmt 6 qseqid staxids bitscore qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore             --max-target-seqs 10             --max-hsps 1             --evalue 1e-10             --threads 30             --taxon-exclude 1049056             > Panopea_generosa_v1.diamond.busco_genes.out 2> logs/Panopea_generosa_v1/run_diamond_blastp.log
[Wed Jul 28 18:01:48 2021]
Finished job 1.
2 of 3 steps (67%) done
Select jobs to execute...

[Wed Jul 28 18:01:48 2021]
localrule all:
    input: Panopea_generosa_v1.diamond.busco_genes.out
    jobid: 0

[Wed Jul 28 18:01:48 2021]
Finished job 0.
3 of 3 steps (100%) done
Complete log: /gscratch/scrubbed/samwhite/outputs/20210712_pgen_blobtools_Panopea-generosa-v1.0/diamond_blastp/.snakemake/log/2021-07-28T175826.517093.snakemake.log