Creating specified working directory /gscratch/scrubbed/samwhite/outputs/20210712_pgen_blobtools_Panopea-generosa-v1.0/diamond.
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 30
Rules claiming more threads will be scaled down.
Job counts:
	count	jobs
	1	all
	1	chunk_fasta_by_busco
	1	run_diamond_blastx
	1	unchunk_blastx
	4
Select jobs to execute...

[Wed Jul 28 18:01:50 2021]
rule chunk_fasta_by_busco:
    input: ../windowmasker/Panopea_generosa_v1.windowmasker.fasta, ../busco/Panopea_generosa_v1.busco.archaea_odb10/full_table.tsv.gz
    output: Panopea_generosa_v1.fasta.chunks
    log: logs/Panopea_generosa_v1/chunk_fasta_by_busco.log
    jobid: 3
    benchmark: logs/Panopea_generosa_v1/chunk_fasta_by_busco.benchmark.txt
    wildcards: assembly=Panopea_generosa_v1

/gscratch/srlab/programs/anaconda3/envs/btk_env/bin/python3.8 /gscratch/scrubbed/samwhite/outputs/20210712_pgen_blobtools_Panopea-generosa-v1.0/diamond/.snakemake/scripts/tmp2zav_lz0.chunk_fasta.py
2021-07-28 18:01:50,772 [INFO] Parsing BUSCO full summary file
2021-07-28 18:01:50,772 [INFO] Splitting ../windowmasker/Panopea_generosa_v1.windowmasker.fasta into chunks
[Wed Jul 28 18:03:04 2021]
Finished job 3.
1 of 4 steps (25%) done
Select jobs to execute...

[Wed Jul 28 18:03:04 2021]
rule run_diamond_blastx:
    input: Panopea_generosa_v1.fasta.chunks, /gscratch/srlab/blastdbs/20210401_uniprot_btk/reference_proteomes.dmnd
    output: Panopea_generosa_v1.diamond.reference_proteomes.out.raw
    log: logs/Panopea_generosa_v1/run_diamond_blastx.log
    jobid: 2
    benchmark: logs/Panopea_generosa_v1/run_diamond_blastx.benchmark.txt
    wildcards: assembly=Panopea_generosa_v1
    threads: 30

diamond blastx             --query Panopea_generosa_v1.fasta.chunks             --db /gscratch/srlab/blastdbs/20210401_uniprot_btk/reference_proteomes.dmnd             --outfmt 6 qseqid staxids bitscore qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore             --max-target-seqs 10             --max-hsps 1             --evalue 1e-10             --threads 30             --taxon-exclude 1049056             > Panopea_generosa_v1.diamond.reference_proteomes.out.raw 2> logs/Panopea_generosa_v1/run_diamond_blastx.log
[Wed Jul 28 20:33:39 2021]
Finished job 2.
2 of 4 steps (50%) done
Select jobs to execute...

[Wed Jul 28 20:33:40 2021]
rule unchunk_blastx:
    input: Panopea_generosa_v1.diamond.reference_proteomes.out.raw
    output: Panopea_generosa_v1.diamond.reference_proteomes.out
    log: logs/Panopea_generosa_v1/unchunk_blast.log
    jobid: 1
    benchmark: logs/Panopea_generosa_v1/unchunk_blast.benchmark.txt
    wildcards: assembly=Panopea_generosa_v1

/gscratch/srlab/programs/anaconda3/envs/btk_env/bin/python3.8 /gscratch/scrubbed/samwhite/outputs/20210712_pgen_blobtools_Panopea-generosa-v1.0/diamond/.snakemake/scripts/tmpdgjta3vs.unchunk_blast.py
[Wed Jul 28 20:33:40 2021]
Finished job 1.
3 of 4 steps (75%) done
Select jobs to execute...

[Wed Jul 28 20:33:40 2021]
localrule all:
    input: Panopea_generosa_v1.diamond.reference_proteomes.out
    jobid: 0

[Wed Jul 28 20:33:40 2021]
Finished job 0.
4 of 4 steps (100%) done
Complete log: /gscratch/scrubbed/samwhite/outputs/20210712_pgen_blobtools_Panopea-generosa-v1.0/diamond/.snakemake/log/2021-07-28T180149.236165.snakemake.log