Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 4
Rules claiming more threads will be scaled down.
Job counts:
	count	jobs
	1	all
	1	run_blobtools_add
	1	run_blobtools_create
	3
Select jobs to execute...

[Thu Jul 29 06:39:42 2021]
rule run_blobtools_create:
    input: ../window_stats/Panopea_generosa_v1.window_stats.tsv, ../busco/Panopea_generosa_v1.busco.arthropoda_odb10/full_table.tsv.gz, ../diamond_blastp/Panopea_generosa_v1.diamond.busco_genes.out, /gscratch/srlab/blastdbs/20210401_ncbi_taxonomy, Panopea_generosa_v1.meta.yaml
    output: Panopea_generosa_v1/meta.json, Panopea_generosa_v1/identifiers.json, Panopea_generosa_v1/buscogenes_phylum.json, Panopea_generosa_v1/reads_cov.json, Panopea_generosa_v1/arthropoda_odb10_busco.json
    log: logs/Panopea_generosa_v1/run_blobtools_create.log
    jobid: 1
    benchmark: logs/Panopea_generosa_v1/run_blobtools_create.benchmark.txt
    threads: 4

blobtools replace             --bedtsvdir ../window_stats             --meta Panopea_generosa_v1.meta.yaml             --taxdump /gscratch/srlab/blastdbs/20210401_ncbi_taxonomy             --taxrule buscogenes             --busco ../busco/Panopea_generosa_v1.busco.arthropoda_odb10/full_table.tsv.gz --busco ../busco/Panopea_generosa_v1.busco.eukaryota_odb10/full_table.tsv.gz --busco ../busco/Panopea_generosa_v1.busco.metazoa_odb10/full_table.tsv.gz --busco ../busco/Panopea_generosa_v1.busco.bacteria_odb10/full_table.tsv.gz --busco ../busco/Panopea_generosa_v1.busco.archaea_odb10/full_table.tsv.gz             --hits ../diamond_blastp/Panopea_generosa_v1.diamond.busco_genes.out             --evalue 1e-25             --hit-count 100000             --threads 4             Panopea_generosa_v1 > logs/Panopea_generosa_v1/run_blobtools_create.log 2>&1
[Thu Jul 29 06:40:05 2021]
Finished job 1.
1 of 3 steps (33%) done
Select jobs to execute...

[Thu Jul 29 06:40:05 2021]
rule run_blobtools_add:
    input: Panopea_generosa_v1/meta.json, ../diamond/Panopea_generosa_v1.diamond.reference_proteomes.out, ../blastn/Panopea_generosa_v1.blastn.nt.out, /gscratch/srlab/blastdbs/20210401_ncbi_taxonomy
    output: Panopea_generosa_v1/buscoregions_phylum.json
    log: logs/Panopea_generosa_v1/run_blobtools_add.log
    jobid: 3
    benchmark: logs/Panopea_generosa_v1/run_blobtools_add.benchmark.txt
    threads: 4

blobtools replace             --taxdump /gscratch/srlab/blastdbs/20210401_ncbi_taxonomy             --taxrule bestdistorder=buscoregions              --hits ../diamond/Panopea_generosa_v1.diamond.reference_proteomes.out             --hits ../blastn/Panopea_generosa_v1.blastn.nt.out             --evalue 1e-25             --hit-count 10             --threads 4              Panopea_generosa_v1 > logs/Panopea_generosa_v1/run_blobtools_add.log 2>&1
[Thu Jul 29 06:40:18 2021]
Finished job 3.
2 of 3 steps (67%) done
Select jobs to execute...

[Thu Jul 29 06:40:18 2021]
localrule all:
    input: Panopea_generosa_v1/meta.json, Panopea_generosa_v1/identifiers.json, Panopea_generosa_v1/buscoregions_phylum.json, Panopea_generosa_v1/buscogenes_phylum.json, Panopea_generosa_v1/reads_cov.json, Panopea_generosa_v1/arthropoda_odb10_busco.json
    jobid: 0

[Thu Jul 29 06:40:18 2021]
Finished job 0.
3 of 3 steps (100%) done
Complete log: /gscratch/scrubbed/samwhite/outputs/20210712_pgen_blobtools_Panopea-generosa-v1.0/blobtools/.snakemake/log/2021-07-29T063941.838288.snakemake.log