[2021-06-29 11:16:20,748] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-06-29 11:16:20,791] multiqc [DEBUG ] Loading config settings from: /usr/lusers/samwhite/.multiqc_config.yaml [2021-06-29 11:16:20,791] multiqc [DEBUG ] New config 'star': {'fn': '*Log.final.out'} [2021-06-29 11:16:20,791] multiqc [DEBUG ] New config 'star/genecounts': {'fn': '*ReadsPerGene.out.tab'} [2021-06-29 11:16:20,791] multiqc [DEBUG ] Added to filename patterns: {'fastp': {'fn': '*report.json'}} [2021-06-29 11:16:20,792] multiqc [DEBUG ] New config 'hisat2': {'contents': 'HISAT2 summary stats:', 'shared': True} [2021-06-29 11:16:20,792] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-06-29 11:16:20,792] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-06-29 11:16:26,139] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-06-29 11:16:26,139] multiqc [INFO ] This is MultiQC v1.8 [2021-06-29 11:16:26,141] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-06-29 11:16:26,141] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs [2021-06-29 11:16:26,141] multiqc [INFO ] Template : default [2021-06-29 11:16:26,141] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-06-29 11:16:26,142] multiqc [INFO ] Searching : /gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs [2021-06-29 11:16:26,142] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-06-29 11:16:26,143] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpl0yavvi2 [2021-06-29 11:16:26,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S59M_R2_fastqc.html [2021-06-29 11:16:26,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S44F_R1_fastqc.html [2021-06-29 11:16:26,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 29F_R1_val_1_fastqc.html [2021-06-29 11:16:26,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 39F_R1_val_1_fastqc.html [2021-06-29 11:16:26,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S23M_R1_fastqc.html [2021-06-29 11:16:26,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 19F_R1_val_1_fastqc.html [2021-06-29 11:16:26,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 31M_R2_val_2_fastqc.html [2021-06-29 11:16:26,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S36F_R2_fastqc.html [2021-06-29 11:16:26,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 9M_R2_val_2_fastqc.html [2021-06-29 11:16:26,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 35F_R2_val_2_fastqc.html [2021-06-29 11:16:26,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S36F_R1_fastqc.html [2021-06-29 11:16:26,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S9M_R2_fastqc.html [2021-06-29 11:16:26,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S19F_R1_fastqc.html [2021-06-29 11:16:26,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16F_R2_val_2_fastqc.html [2021-06-29 11:16:26,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S76F_R1_fastqc.html [2021-06-29 11:16:26,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 59M_R2_val_2_fastqc.html [2021-06-29 11:16:26,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 64M_R2_val_2_fastqc.html [2021-06-29 11:16:26,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 76F_R2_val_2_fastqc.html [2021-06-29 11:16:26,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S44F_R2_fastqc.html [2021-06-29 11:16:26,787] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 39F_R2_val_2_fastqc.html [2021-06-29 11:16:26,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S12M_R2_fastqc.html [2021-06-29 11:16:26,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S52F_R2_fastqc.html [2021-06-29 11:16:26,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 54F_R2_val_2_fastqc.html [2021-06-29 11:16:26,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S3F_R1_fastqc.html [2021-06-29 11:16:26,791] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S39F_R2_fastqc.html [2021-06-29 11:16:26,827] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 44F_R1_val_1_fastqc.html [2021-06-29 11:16:26,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S35F_R2_fastqc.html [2021-06-29 11:16:26,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 12M_R1_val_1_fastqc.html [2021-06-29 11:16:26,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S22F_R2_fastqc.html [2021-06-29 11:16:26,830] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S50F_R2_fastqc.html [2021-06-29 11:16:26,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2041011.out [2021-06-29 11:16:26,837] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2041011.out [2021-06-29 11:16:26,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S53F_R2_fastqc.html [2021-06-29 11:16:26,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S41F_R2_fastqc.html [2021-06-29 11:16:26,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S9M_R1_fastqc.html [2021-06-29 11:16:26,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 36F_R2_val_2_fastqc.html [2021-06-29 11:16:26,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S77F_R1_fastqc.html [2021-06-29 11:16:26,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16F_R1_val_1_fastqc.html [2021-06-29 11:16:26,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6M_R2_val_2_fastqc.html [2021-06-29 11:16:26,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S13M_R2_fastqc.html [2021-06-29 11:16:26,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 77F_R1_val_1_fastqc.html [2021-06-29 11:16:26,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S59M_R1_fastqc.html [2021-06-29 11:16:26,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S64M_R1_fastqc.html [2021-06-29 11:16:26,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S64M_R2_fastqc.html [2021-06-29 11:16:26,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 53F_R2_val_2_fastqc.html [2021-06-29 11:16:26,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 41F_R1_val_1_fastqc.html [2021-06-29 11:16:26,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S52F_R1_fastqc.html [2021-06-29 11:16:26,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S54F_R2_fastqc.html [2021-06-29 11:16:26,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 64M_R1_val_1_fastqc.html [2021-06-29 11:16:26,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 54F_R1_val_1_fastqc.html [2021-06-29 11:16:26,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S3F_R2_fastqc.html [2021-06-29 11:16:26,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 50F_R1_val_1_fastqc.html [2021-06-29 11:16:26,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S41F_R1_fastqc.html [2021-06-29 11:16:26,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 50F_R2_val_2_fastqc.html [2021-06-29 11:16:26,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S48M_R2_fastqc.html [2021-06-29 11:16:26,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 52F_R1_val_1_fastqc.html [2021-06-29 11:16:26,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S16F_R2_fastqc.html [2021-06-29 11:16:26,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 59M_R1_val_1_fastqc.html [2021-06-29 11:16:26,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 23M_R1_val_1_fastqc.html [2021-06-29 11:16:26,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S23M_R2_fastqc.html [2021-06-29 11:16:26,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 77F_R2_val_2_fastqc.html [2021-06-29 11:16:26,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S12M_R1_fastqc.html [2021-06-29 11:16:26,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S39F_R1_fastqc.html [2021-06-29 11:16:26,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 41F_R2_val_2_fastqc.html [2021-06-29 11:16:26,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6M_R1_val_1_fastqc.html [2021-06-29 11:16:26,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S22F_R1_fastqc.html [2021-06-29 11:16:26,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S54F_R1_fastqc.html [2021-06-29 11:16:26,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 48M_R1_val_1_fastqc.html [2021-06-29 11:16:26,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 22F_R1_val_1_fastqc.html [2021-06-29 11:16:26,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S6M_R1_fastqc.html [2021-06-29 11:16:26,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S13M_R1_fastqc.html [2021-06-29 11:16:26,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S29F_R1_fastqc.html [2021-06-29 11:16:26,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3F_R1_val_1_fastqc.html [2021-06-29 11:16:26,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S31M_R2_fastqc.html [2021-06-29 11:16:26,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S16F_R1_fastqc.html [2021-06-29 11:16:26,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 9M_R1_val_1_fastqc.html [2021-06-29 11:16:26,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7M_R1_val_1_fastqc.html [2021-06-29 11:16:26,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 12M_R2_val_2_fastqc.html [2021-06-29 11:16:26,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 76F_R1_val_1_fastqc.html [2021-06-29 11:16:26,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7M_R2_val_2_fastqc.html [2021-06-29 11:16:26,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S53F_R1_fastqc.html [2021-06-29 11:16:26,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 13M_R1_val_1_fastqc.html [2021-06-29 11:16:26,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 44F_R2_val_2_fastqc.html [2021-06-29 11:16:26,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 35F_R1_val_1_fastqc.html [2021-06-29 11:16:26,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 53F_R1_val_1_fastqc.html [2021-06-29 11:16:26,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 22F_R2_val_2_fastqc.html [2021-06-29 11:16:26,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S48M_R1_fastqc.html [2021-06-29 11:16:26,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 29F_R2_val_2_fastqc.html [2021-06-29 11:16:26,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S7M_R1_fastqc.html [2021-06-29 11:16:26,944] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 52F_R2_val_2_fastqc.html [2021-06-29 11:16:26,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 23M_R2_val_2_fastqc.html [2021-06-29 11:16:26,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3F_R2_val_2_fastqc.html [2021-06-29 11:16:26,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 20210629_cvir_fastqc_yaamini_rnaseq-wgbs.sh [2021-06-29 11:16:26,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S31M_R1_fastqc.html [2021-06-29 11:16:26,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: fastq_checksums.md5 [2021-06-29 11:16:26,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S35F_R1_fastqc.html [2021-06-29 11:16:26,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 36F_R1_val_1_fastqc.html [2021-06-29 11:16:26,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S6M_R2_fastqc.html [2021-06-29 11:16:26,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S50F_R1_fastqc.html [2021-06-29 11:16:26,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S77F_R2_fastqc.html [2021-06-29 11:16:26,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 48M_R2_val_2_fastqc.html [2021-06-29 11:16:26,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 31M_R1_val_1_fastqc.html [2021-06-29 11:16:26,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 19F_R2_val_2_fastqc.html [2021-06-29 11:16:26,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 13M_R2_val_2_fastqc.html [2021-06-29 11:16:26,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S7M_R2_fastqc.html [2021-06-29 11:16:26,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S29F_R2_fastqc.html [2021-06-29 11:16:26,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S19F_R2_fastqc.html [2021-06-29 11:16:26,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: S76F_R2_fastqc.html [2021-06-29 11:16:31,647] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-06-29 11:16:31,665] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-06-29 11:16:31,701] multiqc [DEBUG ] No samples found: custom_content [2021-06-29 11:16:31,754] multiqc [DEBUG ] No samples found: conpair [2021-06-29 11:16:31,864] multiqc [DEBUG ] No samples found: peddy [2021-06-29 11:16:31,941] multiqc [DEBUG ] No samples found: methylQA [2021-06-29 11:16:31,962] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-06-29 11:16:32,097] multiqc [DEBUG ] No samples found: qualimap [2021-06-29 11:16:32,125] multiqc [DEBUG ] No samples found: preseq [2021-06-29 11:16:32,176] multiqc [DEBUG ] No samples found: quast [2021-06-29 11:16:32,194] multiqc [DEBUG ] No samples found: qorts [2021-06-29 11:16:32,257] multiqc [DEBUG ] No samples found: rna_seqc [2021-06-29 11:16:32,301] multiqc [DEBUG ] No samples found: rsem [2021-06-29 11:16:32,435] multiqc [DEBUG ] No samples found: rseqc [2021-06-29 11:16:32,459] multiqc [DEBUG ] No samples found: busco [2021-06-29 11:16:32,535] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-06-29 11:16:32,577] multiqc [DEBUG ] No samples found: disambiguate [2021-06-29 11:16:32,608] multiqc [DEBUG ] No samples found: supernova [2021-06-29 11:16:32,763] multiqc [DEBUG ] No samples found: deeptools [2021-06-29 11:16:32,805] multiqc [DEBUG ] No samples found: sargasso [2021-06-29 11:16:32,847] multiqc [DEBUG ] No samples found: verifybamid [2021-06-29 11:16:32,866] multiqc [DEBUG ] No samples found: mirtrace [2021-06-29 11:16:32,889] multiqc [DEBUG ] No samples found: happy [2021-06-29 11:16:32,919] multiqc [DEBUG ] No samples found: homer [2021-06-29 11:16:32,934] multiqc [DEBUG ] No samples found: macs2 [2021-06-29 11:16:32,941] multiqc [DEBUG ] No samples found: theta2 [2021-06-29 11:16:32,966] multiqc [DEBUG ] No samples found: snpeff [2021-06-29 11:16:33,009] multiqc [DEBUG ] No samples found: gatk [2021-06-29 11:16:33,025] multiqc [DEBUG ] No samples found: htseq [2021-06-29 11:16:33,058] multiqc [DEBUG ] No samples found: bcftools [2021-06-29 11:16:33,065] multiqc [DEBUG ] No samples found: featureCounts [2021-06-29 11:16:33,073] multiqc [DEBUG ] No samples found: fgbio [2021-06-29 11:16:33,079] multiqc [DEBUG ] No samples found: dedup [2021-06-29 11:16:33,100] multiqc [DEBUG ] No samples found: damageprofiler [2021-06-29 11:16:33,272] multiqc [DEBUG ] No samples found: biobambam2 [2021-06-29 11:16:33,293] multiqc [DEBUG ] No samples found: mtnucratio [2021-06-29 11:16:33,297] multiqc [DEBUG ] No samples found: picard [2021-06-29 11:16:33,314] multiqc [DEBUG ] No samples found: prokka [2021-06-29 11:16:33,323] multiqc [DEBUG ] No samples found: samblaster [2021-06-29 11:16:33,408] multiqc [DEBUG ] No samples found: samtools [2021-06-29 11:16:33,453] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-06-29 11:16:33,509] multiqc [DEBUG ] No samples found: bamtools [2021-06-29 11:16:33,519] multiqc [DEBUG ] No samples found: jellyfish [2021-06-29 11:16:33,539] multiqc [DEBUG ] No samples found: vcftools [2021-06-29 11:16:33,562] multiqc [DEBUG ] No samples found: longranger [2021-06-29 11:16:33,613] multiqc [DEBUG ] No samples found: stacks [2021-06-29 11:16:33,678] multiqc [DEBUG ] No samples found: bbmap [2021-06-29 11:16:33,724] multiqc [DEBUG ] No samples found: bismark [2021-06-29 11:16:33,759] multiqc [DEBUG ] No samples found: biscuit [2021-06-29 11:16:33,782] multiqc [DEBUG ] No samples found: hicexplorer [2021-06-29 11:16:33,802] multiqc [DEBUG ] No samples found: hicup [2021-06-29 11:16:33,845] multiqc [DEBUG ] No samples found: hicpro [2021-06-29 11:16:33,854] multiqc [DEBUG ] No samples found: salmon [2021-06-29 11:16:33,890] multiqc [DEBUG ] No samples found: kallisto [2021-06-29 11:16:33,939] multiqc [DEBUG ] No samples found: slamdunk [2021-06-29 11:16:33,969] multiqc [DEBUG ] No samples found: star [2021-06-29 11:16:34,005] multiqc [DEBUG ] No samples found: hisat2 [2021-06-29 11:16:34,033] multiqc [DEBUG ] No samples found: tophat [2021-06-29 11:16:34,057] multiqc [DEBUG ] No samples found: bowtie2 [2021-06-29 11:16:34,081] multiqc [DEBUG ] No samples found: bowtie1 [2021-06-29 11:16:34,089] multiqc [DEBUG ] No samples found: kat [2021-06-29 11:16:34,097] multiqc [DEBUG ] No samples found: leehom [2021-06-29 11:16:34,139] multiqc [DEBUG ] No samples found: adapterRemoval [2021-06-29 11:16:34,146] multiqc [DEBUG ] No samples found: clipandmerge [2021-06-29 11:16:34,161] multiqc [DEBUG ] No samples found: cutadapt [2021-06-29 11:16:34,168] multiqc [DEBUG ] No samples found: flexbar [2021-06-29 11:16:34,184] multiqc [DEBUG ] No samples found: trimmomatic [2021-06-29 11:16:34,258] multiqc [DEBUG ] No samples found: skewer [2021-06-29 11:16:34,268] multiqc [DEBUG ] No samples found: sortmerna [2021-06-29 11:16:34,294] multiqc [DEBUG ] No samples found: biobloomtools [2021-06-29 11:16:34,380] multiqc [DEBUG ] No samples found: fastq_screen [2021-06-29 11:16:34,420] multiqc [DEBUG ] No samples found: afterqc [2021-06-29 11:16:34,458] multiqc [DEBUG ] No samples found: fastp [2021-06-29 11:16:52,956] multiqc.modules.fastqc.fastqc [INFO ] Found 104 reports [2021-06-29 11:17:01,943] multiqc [DEBUG ] No samples found: minionqc [2021-06-29 11:17:01,960] multiqc [DEBUG ] No samples found: mosdepth [2021-06-29 11:17:01,975] multiqc [DEBUG ] No samples found: clusterflow [2021-06-29 11:17:02,013] multiqc [DEBUG ] No samples found: bcl2fastq [2021-06-29 11:17:02,031] multiqc [DEBUG ] No samples found: interop [2021-06-29 11:17:02,051] multiqc [DEBUG ] No samples found: flash [2021-06-29 11:17:02,082] multiqc [DEBUG ] No samples found: seqyclean [2021-06-29 11:17:02,233] multiqc [INFO ] Compressing plot data [2021-06-29 11:17:02,344] multiqc [INFO ] Report : multiqc_report.html [2021-06-29 11:17:02,770] multiqc [INFO ] Data : multiqc_data [2021-06-29 11:17:02,782] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,784] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,785] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/mqc_fastqc_sequence_counts_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,786] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,788] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,789] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,791] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,792] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,793] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/mqc_fastqc_sequence_length_distribution_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,794] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,795] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/mqc_fastqc_overrepresented_sequencesi_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,796] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,798] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:02,799] multiqc [DEBUG ] Moving data file from '/tmp/tmpl0yavvi2/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/samwhite/outputs/20210629_cvir_fastqc_yaamini_rnaseq-wgbs/multiqc_data' [2021-06-29 11:17:04,195] multiqc [INFO ] MultiQC complete