FastQCFastQC Report
Tue 29 Jun 2021
S59M_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS59M_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21942298
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCACCATATAGCTATCTTTAGTTGATTGAACAATTTTACTGAGCTCTAT317060.14449717162714681No Hit
CCACCGTATGCTTTACATTTTAAATCACTGATTAACTGCCTCTAAGCTGC248790.1133837485936979No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)