FastQCFastQC Report
Tue 29 Jun 2021
S36F_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS36F_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21713698
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCATATAGCTATCTTTAGTTGATTGAACAATTTTACTGAGCTCTATTA580550.2673657890977391No Hit
CCTACCTAACCATATCCTTAGCAATATTAAGGCTGCACTTAAAAGCATTT458930.2113550625968916No Hit
TCACCATATAGCTATCTTTAGTTGATTGAACAATTTTACTGAGCTCTATT388090.17873049537669722No Hit
CCATATAGCTATCTTTAGTTGATTGAACAATTTTACTGAGCTCTATTAAA305970.14091105071093832No Hit
TCCAGCTTAGCTTTTCAAAGTTGCACGGGGTCTTCTTGTCTAACTTTCTT304510.140238664091211No Hit
CGCCCCACCCAAAAATCTTTTACTTATTAATCCAGCTTAGCTTTTCAAAG283860.13072853827109504No Hit
CACCATGTTACGACTTACCTCTCCTTTCGGGTAGGGTGACGGGCGATTTG274820.12656526769415324No Hit
CCAGCTTAGCTTTTCAAAGTTGCACGGGGTCTTCTTGTCTAACTTTCTTA225130.10368109568439239No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)