FastQCFastQC Report
Tue 29 Jun 2021
S29F_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS29F_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22594305
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACCTAACCATATCCTTAGCAATATTAAGGCTGCGCTTAAAAGCATTT361520.16000492159418048No Hit
CACCATATAGCTATCTTTAGTTGATTGAACAATTTTACTGAGCTCTATTA283490.12546967034392073No Hit
CCACCACTTAGAGTTGTCACATATGGTCACAGTAATAGTTCGGTCGGCCG238590.10559740607201681No Hit
CGCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAG227090.10050762791774298No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)