/home/sam/programs/quast-5.0.2/quast.py --threads=20 --min-contig=100 --labels Olurida_v090 /home/sam/data/O_lurida/genomes/Olur_v090.SPolished.asm.wengan.fasta

Version: 5.0.2

System information:
  OS: Linux-4.4.0-210-generic-x86_64-with-Ubuntu-16.04-xenial (linux_64)
  Python version: 2.7.12
  CPUs number: 24

Started: 2021-05-21 06:54:21

Logging to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/quast.log

CWD: /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan
Main parameters: 
  MODE: default, threads: 20, minimum contig length: 100, minimum alignment length: 65, \
  ambiguity: one, threshold for extensive misassembly size: 1000

Contigs:
  Pre-processing...
  /home/sam/data/O_lurida/genomes/Olur_v090.SPolished.asm.wengan.fasta ==> Olurida_v090

2021-05-21 06:54:33
Running Basic statistics processor...
  Contig files: 
    Olurida_v090
  Calculating N50 and L50...
    Olurida_v090, N50 = 9729, L50 = 6029, Total length = 177359031, GC % = 36.06, # N's per 100 kbp =  0.00
  Drawing Nx plot...
    saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/basic_stats/Nx_plot.pdf
  Drawing cumulative plot...
    saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/basic_stats/cumulative_plot.pdf
  Drawing GC content plot...
    saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/basic_stats/GC_content_plot.pdf
  Drawing Olurida_v090 GC content plot...
    saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/basic_stats/Olurida_v090_GC_content_plot.pdf
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding or --glimmer option to enable it.

2021-05-21 06:54:44
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 2: Creating Icarus viewers...
  2 of 2: Creating PDF with all tables and plots...
Done

2021-05-21 06:54:47
RESULTS:
  Text versions of total report are saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) is saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/report.html
  PDF version (tables and plots) is saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/report.pdf
  Icarus (contig browser) is saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/icarus.html
  Log is saved to /home/sam/analyses/20210521_olur_quast_Olur-v090-wengan/quast_results/results_2021_05_21_06_54_20/quast.log

Finished: 2021-05-21 06:54:47
Elapsed time: 0:00:26.810889
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!