A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2021-05-18, 11:45 based on data in:
/gscratch/scrubbed/samwhite/outputs/20210518_olur_fastp_bgi
General Statistics
Showing 9/9 rows and 4/6 columns.| Sample Name | % Duplication | GC content | % PF | % Adapter |
|---|---|---|---|---|
| 151114_I191_FCH3Y35BCXX_L1_wHAIPI023992-37 | 0.3% | 36.7% | 100.0% | 3.1% |
| 151114_I191_FCH3Y35BCXX_L2_wHAMPI023991-66 | 0.4% | 36.5% | 100.0% | 2.9% |
| 151118_I137_FCH3KNJBBXX_L5_wHAXPI023905-96 | 1.9% | 37.2% | 100.0% | 4.2% |
| 160103_I137_FCH3V5YBBXX_L3_WHOSTibkDCABDLAAPEI-62 | 4.5% | 37.5% | 99.7% | 0.9% |
| 160103_I137_FCH3V5YBBXX_L3_WHOSTibkDCACDTAAPEI-75 | 15.1% | 37.4% | 99.7% | 0.6% |
| 160103_I137_FCH3V5YBBXX_L4_WHOSTibkDCABDLAAPEI-62 | 3.4% | 37.6% | 99.7% | 0.9% |
| 160103_I137_FCH3V5YBBXX_L4_WHOSTibkDCACDTAAPEI-75 | 11.7% | 37.5% | 99.9% | 0.4% |
| 160103_I137_FCH3V5YBBXX_L5_WHOSTibkDCAADWAAPEI-74 | 2.1% | 38.0% | 100.0% | 0.8% |
| 160103_I137_FCH3V5YBBXX_L6_WHOSTibkDCAADWAAPEI-74 | 2.7% | 38.0% | 99.8% | 1.2% |
fastp
fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)
Filtered Reads
Filtering statistics of sampled reads.
Duplication Rates
Duplication rates of sampled reads.
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Insert Sizes
Insert size estimation of sampled reads.
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Sequence Quality
Average sequencing quality over each base of all reads.
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GC Content
Average GC content over each base of all reads.
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N content
Average N content over each base of all reads.
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