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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2021-04-01, 19:17 based on data in: /gscratch/scrubbed/samwhite/outputs/20210401_pgen_fastp_10x-genomics

        General Statistics

        Showing 21/21 rows and 4/6 columns.
        Sample Name% DuplicationGC content% PF% Adapter
        10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L001
        4.7%
        37.9%
        95.0%
        1.8%
        10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L002
        4.9%
        37.9%
        94.9%
        1.8%
        10x-Genomics-Libraries-Geo10x5-A3-MultipleA_S10_L002_R1_001
        4.9%
        37.9%
        94.9%
        1.8%
        10x-Genomics-Libraries-Geo10x5-A3-MultipleB_S11_L001
        4.0%
        38.0%
        94.9%
        1.8%
        10x-Genomics-Libraries-Geo10x5-A3-MultipleB_S11_L002
        4.2%
        37.9%
        94.8%
        1.8%
        10x-Genomics-Libraries-Geo10x5-A3-MultipleC_S12_L001
        3.9%
        37.8%
        95.0%
        1.9%
        10x-Genomics-Libraries-Geo10x5-A3-MultipleC_S12_L002
        4.1%
        37.8%
        94.9%
        1.9%
        10x-Genomics-Libraries-Geo10x5-A3-MultipleD_S13_L001
        4.2%
        37.9%
        95.1%
        1.9%
        10x-Genomics-Libraries-Geo10x5-A3-MultipleD_S13_L002
        4.4%
        37.8%
        95.0%
        1.9%
        10x-Genomics-Libraries-Geo10x6-B3-MultipleA_S14_L001
        3.8%
        38.1%
        94.8%
        1.9%
        10x-Genomics-Libraries-Geo10x6-B3-MultipleA_S14_L002
        4.1%
        38.1%
        94.7%
        1.9%
        10x-Genomics-Libraries-Geo10x6-B3-MultipleB_S15_L001
        4.3%
        38.1%
        94.7%
        1.9%
        10x-Genomics-Libraries-Geo10x6-B3-MultipleB_S15_L002
        4.6%
        38.1%
        94.6%
        1.9%
        10x-Genomics-Libraries-Geo10x6-B3-MultipleC_S16_L001
        4.4%
        38.0%
        94.8%
        1.9%
        10x-Genomics-Libraries-Geo10x6-B3-MultipleC_S16_L002
        4.7%
        38.0%
        94.8%
        1.9%
        10x-Genomics-Libraries-Geo10x6-B3-MultipleD_S17_L001
        4.3%
        38.2%
        95.2%
        1.8%
        10x-Genomics-Libraries-Geo10x6-B3-MultipleD_S17_L002
        4.6%
        38.2%
        95.1%
        1.8%
        Geoduck_HiC_S2_L002
        77.2%
        35.4%
        95.4%
        6.1%
        Geoduck_HiC_S2_L006
        75.8%
        35.4%
        95.6%
        6.1%
        HiC-Libraries-GeoHiC-C3-N701_S18_L001
        11.3%
        49.7%
        95.6%
        1.2%
        HiC-Libraries-GeoHiC-C3-N701_S18_L002
        10.9%
        49.3%
        96.0%
        1.4%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)

        Filtered Reads

        Filtering statistics of sampled reads.

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        Duplication Rates

        Duplication rates of sampled reads.

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        Insert Sizes

        Insert size estimation of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

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        GC Content

        Average GC content over each base of all reads.

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        N content

        Average N content over each base of all reads.

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        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.