diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.071319s] #Target sequences to report alignments for: 1 Opening the input file... [0.000125s] Opening the output file... [0.000512s] Loading query sequences... [0.470453s] Masking queries... [0.428518s] Building query seed set... [0.046845s] Algorithm: Double-indexed Building query histograms... [0.071782s] Allocating buffers... [0.00062s] Loading reference sequences... [3.82895s] Masking reference... [0.724104s] Initializing temporary storage... [0.005092s] Building reference histograms... [0.167739s] Allocating buffers... [0.000262s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.110228s] Building query seed array... [0.058261s] Computing hash join... [0.08037s] Building seed filter... [0.003311s] Searching alignments... [0.12745s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.120409s] Building query seed array... [0.055985s] Computing hash join... [0.03093s] Building seed filter... [0.001967s] Searching alignments... [0.091169s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.11106s] Building query seed array... [0.038358s] Computing hash join... [0.026467s] Building seed filter... [0.001954s] Searching alignments... [0.089651s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.088177s] Building query seed array... [0.031588s] Computing hash join... [0.026159s] Building seed filter... [0.001899s] Searching alignments... [0.090823s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.117176s] Building query seed array... [0.055422s] Computing hash join... [0.032479s] Building seed filter... [0.002169s] Searching alignments... [0.081571s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.125855s] Building query seed array... [0.050125s] Computing hash join... [0.029309s] Building seed filter... [0.002083s] Searching alignments... [0.080248s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.121811s] Building query seed array... [0.05047s] Computing hash join... [0.027741s] Building seed filter... [0.002002s] Searching alignments... [0.078557s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.088296s] Building query seed array... [0.045207s] Computing hash join... [0.028182s] Building seed filter... [0.002081s] Searching alignments... [0.075073s] Deallocating buffers... [0.00156s] Computing alignments... [1.37309s] Deallocating reference... [0.001592s] Loading reference sequences... [5.7e-05s] Deallocating buffers... [0.000752s] Deallocating queries... [0.001156s] Loading query sequences... [3.4e-05s] Closing the input file... [3.9e-05s] Closing the output file... [0.000261s] Closing the database file... [6.6e-05s] Deallocating taxonomy... [1.7e-05s] Total time = 9.48407s Reported 30094 pairwise alignments, 30635 HSPs. 30094 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/transcriptomes/cbai_transcriptome_v4.0.fasta. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/transcriptomes/cbai_transcriptome_v4.0.fasta. Logging program options... Finished logging system PATH