Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/113_R1_001.fastp-trim.202003184225.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/113_R1_001.fastp-trim.202003184225.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.02825s] #Target sequences to report alignments for: 1 Opening the input file... [0.000284s] Opening the output file... [0.000494s] Loading query sequences... [71.3372s] Masking queries... [87.0707s] Building query seed set... [0.30163s] Algorithm: Double-indexed Building query histograms... [1.97066s] Allocating buffers... [0.001056s] Loading reference sequences... [0.248369s] Masking reference... [0.033735s] Initializing temporary storage... [0.015355s] Building reference histograms... [0.014369s] Allocating buffers... [0.000164s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.015938s] Building query seed array... [1.22908s] Computing hash join... [0.303469s] Building seed filter... [0.003247s] Searching alignments... [1.78807s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017971s] Building query seed array... [1.435s] Computing hash join... [0.285119s] Building seed filter... [0.003481s] Searching alignments... [1.03596s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.01851s] Building query seed array... [1.46205s] Computing hash join... [0.288989s] Building seed filter... [0.003158s] Searching alignments... [0.927114s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014906s] Building query seed array... [1.19567s] Computing hash join... [0.282126s] Building seed filter... [0.003753s] Searching alignments... [0.819223s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014776s] Building query seed array... [1.08329s] Computing hash join... [0.24682s] Building seed filter... [0.003191s] Searching alignments... [0.648241s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017369s] Building query seed array... [1.33263s] Computing hash join... [0.253215s] Building seed filter... [0.00431s] Searching alignments... [0.682565s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.019466s] Building query seed array... [1.35884s] Computing hash join... [0.243177s] Building seed filter... [0.003365s] Searching alignments... [0.709032s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015722s] Building query seed array... [1.08927s] Computing hash join... [0.252744s] Building seed filter... [0.003753s] Searching alignments... [0.596148s] Deallocating buffers... [3.3e-05s] Computing alignments... [148.508s] Deallocating reference... [6.5e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.01779s] Deallocating queries... [0.032321s] Loading query sequences... [1.9e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000906s] Closing the database file... [5.9e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 329.535s Reported 4968439 pairwise alignments, 4968439 HSPs. 4968439 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/113_R2_001.fastp-trim.202003184225.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/113_R2_001.fastp-trim.202003184225.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000164s] #Target sequences to report alignments for: 1 Opening the input file... [0.00792s] Opening the output file... [0.000412s] Loading query sequences... [71.6092s] Masking queries... [79.1257s] Building query seed set... [0.275919s] Algorithm: Double-indexed Building query histograms... [1.98662s] Allocating buffers... [0.001078s] Loading reference sequences... [0.021514s] Masking reference... [0.034201s] Initializing temporary storage... [0.004653s] Building reference histograms... [0.010472s] Allocating buffers... [0.000162s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.010939s] Building query seed array... [1.22062s] Computing hash join... [0.281066s] Building seed filter... [0.003875s] Searching alignments... [1.76019s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016289s] Building query seed array... [1.42482s] Computing hash join... [0.295733s] Building seed filter... [0.003812s] Searching alignments... [0.995375s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016884s] Building query seed array... [1.49292s] Computing hash join... [0.290167s] Building seed filter... [0.003194s] Searching alignments... [0.939401s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013657s] Building query seed array... [1.19535s] Computing hash join... [0.292824s] Building seed filter... [0.004087s] Searching alignments... [0.797905s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013634s] Building query seed array... [1.07709s] Computing hash join... [0.241417s] Building seed filter... [0.003183s] Searching alignments... [0.63476s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015235s] Building query seed array... [1.31867s] Computing hash join... [0.254818s] Building seed filter... [0.003801s] Searching alignments... [0.673803s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.015753s] Building query seed array... [1.37393s] Computing hash join... [0.252942s] Building seed filter... [0.003235s] Searching alignments... [0.744857s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014619s] Building query seed array... [1.0768s] Computing hash join... [0.244007s] Building seed filter... [0.004489s] Searching alignments... [0.699112s] Deallocating buffers... [5.1e-05s] Computing alignments... [157.094s] Deallocating reference... [4.6e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.017558s] Deallocating queries... [0.031813s] Loading query sequences... [1.8e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000248s] Closing the database file... [1.6e-05s] Deallocating taxonomy... [7e-06s] Total time = 330.206s Reported 4951270 pairwise alignments, 4951270 HSPs. 4951270 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/118_R1_001.fastp-trim.202003184931.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/118_R1_001.fastp-trim.202003184931.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7.3e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.005873s] Opening the output file... [0.000914s] Loading query sequences... [65.6338s] Masking queries... [73.3851s] Building query seed set... [0.284727s] Algorithm: Double-indexed Building query histograms... [1.91852s] Allocating buffers... [0.001007s] Loading reference sequences... [0.021525s] Masking reference... [0.030959s] Initializing temporary storage... [0.003019s] Building reference histograms... [0.008749s] Allocating buffers... [0.000134s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009972s] Building query seed array... [1.18223s] Computing hash join... [0.256625s] Building seed filter... [0.00351s] Searching alignments... [0.921368s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018047s] Building query seed array... [1.40121s] Computing hash join... [0.287974s] Building seed filter... [0.003821s] Searching alignments... [0.936211s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018304s] Building query seed array... [1.46738s] Computing hash join... [0.273581s] Building seed filter... [0.003603s] Searching alignments... [0.666629s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.01377s] Building query seed array... [1.17608s] Computing hash join... [0.276324s] Building seed filter... [0.004003s] Searching alignments... [1.09006s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015334s] Building query seed array... [1.07461s] Computing hash join... [0.227021s] Building seed filter... [0.002777s] Searching alignments... [0.895568s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.022397s] Building query seed array... [1.27508s] Computing hash join... [0.24044s] Building seed filter... [0.002547s] Searching alignments... [0.447511s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016333s] Building query seed array... [1.29642s] Computing hash join... [0.243502s] Building seed filter... [0.004178s] Searching alignments... [0.244018s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014867s] Building query seed array... [1.08628s] Computing hash join... [0.257527s] Building seed filter... [0.00439s] Searching alignments... [0.391823s] Deallocating buffers... [4.4e-05s] Computing alignments... [136.946s] Deallocating reference... [4.9e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.018748s] Deallocating queries... [0.030388s] Loading query sequences... [1.8e-05s] Closing the input file... [3.2e-05s] Closing the output file... [0.000361s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [7e-06s] Total time = 296.301s Reported 3451719 pairwise alignments, 3451719 HSPs. 3451719 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/118_R2_001.fastp-trim.202003184931.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/118_R2_001.fastp-trim.202003184931.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.004332s] Opening the output file... [0.000346s] Loading query sequences... [66.1307s] Masking queries... [74.0104s] Building query seed set... [0.325204s] Algorithm: Double-indexed Building query histograms... [1.91914s] Allocating buffers... [0.000997s] Loading reference sequences... [0.023028s] Masking reference... [0.030597s] Initializing temporary storage... [0.003654s] Building reference histograms... [0.008145s] Allocating buffers... [0.000449s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009957s] Building query seed array... [1.21651s] Computing hash join... [0.266236s] Building seed filter... [0.004083s] Searching alignments... [0.912868s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017757s] Building query seed array... [1.40931s] Computing hash join... [0.284502s] Building seed filter... [0.002809s] Searching alignments... [0.912097s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016667s] Building query seed array... [1.43259s] Computing hash join... [0.277579s] Building seed filter... [0.004582s] Searching alignments... [0.665779s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014706s] Building query seed array... [1.17967s] Computing hash join... [0.283973s] Building seed filter... [0.003372s] Searching alignments... [1.11358s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014562s] Building query seed array... [1.04314s] Computing hash join... [0.241643s] Building seed filter... [0.003778s] Searching alignments... [0.885359s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.01544s] Building query seed array... [1.27342s] Computing hash join... [0.245734s] Building seed filter... [0.003431s] Searching alignments... [0.452775s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.015976s] Building query seed array... [1.29687s] Computing hash join... [0.231127s] Building seed filter... [0.00332s] Searching alignments... [0.237529s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014333s] Building query seed array... [1.08009s] Computing hash join... [0.264032s] Building seed filter... [0.004262s] Searching alignments... [0.382483s] Deallocating buffers... [4.9e-05s] Computing alignments... [134.774s] Deallocating reference... [4.7e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.01876s] Deallocating queries... [0.034103s] Loading query sequences... [2e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.001094s] Closing the database file... [1.8e-05s] Deallocating taxonomy... [7e-06s] Total time = 295.262s Reported 3447400 pairwise alignments, 3447400 HSPs. 3447400 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/127_R1_001.fastp-trim.202003185538.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/127_R1_001.fastp-trim.202003185538.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000294s] #Target sequences to report alignments for: 1 Opening the input file... [0.005587s] Opening the output file... [0.00043s] Loading query sequences... [63.877s] Masking queries... [70.1966s] Building query seed set... [0.246807s] Algorithm: Double-indexed Building query histograms... [1.82247s] Allocating buffers... [0.001067s] Loading reference sequences... [0.021794s] Masking reference... [0.032571s] Initializing temporary storage... [0.004304s] Building reference histograms... [0.012224s] Allocating buffers... [0.000173s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.015152s] Building query seed array... [1.14966s] Computing hash join... [0.292766s] Building seed filter... [0.003407s] Searching alignments... [1.87917s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018188s] Building query seed array... [1.35553s] Computing hash join... [0.274825s] Building seed filter... [0.003827s] Searching alignments... [1.18885s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017175s] Building query seed array... [1.39077s] Computing hash join... [0.290437s] Building seed filter... [0.003973s] Searching alignments... [0.997056s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013989s] Building query seed array... [1.12338s] Computing hash join... [0.288598s] Building seed filter... [0.005012s] Searching alignments... [0.944289s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014456s] Building query seed array... [1.03615s] Computing hash join... [0.24314s] Building seed filter... [0.004828s] Searching alignments... [0.739132s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016883s] Building query seed array... [1.24333s] Computing hash join... [0.250122s] Building seed filter... [0.00367s] Searching alignments... [0.798703s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017996s] Building query seed array... [1.27006s] Computing hash join... [0.235624s] Building seed filter... [0.004619s] Searching alignments... [0.795273s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014605s] Building query seed array... [1.02863s] Computing hash join... [0.241905s] Building seed filter... [0.004013s] Searching alignments... [0.681244s] Deallocating buffers... [4.4e-05s] Computing alignments... [132.638s] Deallocating reference... [6e-05s] Loading reference sequences... [6.7e-05s] Deallocating buffers... [0.016165s] Deallocating queries... [0.03124s] Loading query sequences... [2.1e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.000336s] Closing the database file... [2.3e-05s] Deallocating taxonomy... [9e-06s] Total time = 289.019s Reported 5403889 pairwise alignments, 5403889 HSPs. 5403889 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/127_R2_001.fastp-trim.202003185538.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/127_R2_001.fastp-trim.202003185538.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000153s] #Target sequences to report alignments for: 1 Opening the input file... [0.011135s] Opening the output file... [0.001092s] Loading query sequences... [64.4735s] Masking queries... [72.1934s] Building query seed set... [0.249106s] Algorithm: Double-indexed Building query histograms... [1.8561s] Allocating buffers... [0.001051s] Loading reference sequences... [0.024563s] Masking reference... [0.036022s] Initializing temporary storage... [0.004022s] Building reference histograms... [0.009991s] Allocating buffers... [0.000133s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.011671s] Building query seed array... [1.15342s] Computing hash join... [0.277884s] Building seed filter... [0.003033s] Searching alignments... [1.87372s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016293s] Building query seed array... [1.37889s] Computing hash join... [0.280184s] Building seed filter... [0.002974s] Searching alignments... [1.13687s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.015925s] Building query seed array... [1.41879s] Computing hash join... [0.284223s] Building seed filter... [0.00298s] Searching alignments... [0.978345s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014501s] Building query seed array... [1.167s] Computing hash join... [0.282729s] Building seed filter... [0.003516s] Searching alignments... [0.927983s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014525s] Building query seed array... [1.02536s] Computing hash join... [0.237641s] Building seed filter... [0.003498s] Searching alignments... [0.766356s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.013599s] Building query seed array... [1.27029s] Computing hash join... [0.250004s] Building seed filter... [0.002739s] Searching alignments... [0.78387s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016526s] Building query seed array... [1.26478s] Computing hash join... [0.237881s] Building seed filter... [0.00285s] Searching alignments... [0.784659s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014583s] Building query seed array... [1.05431s] Computing hash join... [0.248954s] Building seed filter... [0.002991s] Searching alignments... [0.663742s] Deallocating buffers... [4.7e-05s] Computing alignments... [135.252s] Deallocating reference... [5.2e-05s] Loading reference sequences... [8.9e-05s] Deallocating buffers... [0.017254s] Deallocating queries... [0.030474s] Loading query sequences... [2.1e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.000364s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [4.9e-05s] Total time = 294.265s Reported 5384459 pairwise alignments, 5384459 HSPs. 5384459 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/132_R1_001.fastp-trim.202003180140.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/132_R1_001.fastp-trim.202003180140.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.006258s] Opening the output file... [0.000901s] Loading query sequences... [68.6222s] Masking queries... [67.1826s] Building query seed set... [0.268127s] Algorithm: Double-indexed Building query histograms... [2.28259s] Allocating buffers... [0.001041s] Loading reference sequences... [0.022099s] Masking reference... [0.032552s] Initializing temporary storage... [0.003073s] Building reference histograms... [0.009264s] Allocating buffers... [0.00018s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.008343s] Building query seed array... [1.45142s] Computing hash join... [0.348415s] Building seed filter... [0.003801s] Searching alignments... [1.10837s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017541s] Building query seed array... [1.71928s] Computing hash join... [0.378312s] Building seed filter... [0.004343s] Searching alignments... [1.00975s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018242s] Building query seed array... [1.76704s] Computing hash join... [0.376647s] Building seed filter... [0.00425s] Searching alignments... [0.647072s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015401s] Building query seed array... [1.44542s] Computing hash join... [0.365663s] Building seed filter... [0.003767s] Searching alignments... [0.743353s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015588s] Building query seed array... [1.28853s] Computing hash join... [0.30803s] Building seed filter... [0.002859s] Searching alignments... [0.431142s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017905s] Building query seed array... [1.59188s] Computing hash join... [0.332038s] Building seed filter... [0.002705s] Searching alignments... [0.460055s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017484s] Building query seed array... [1.59058s] Computing hash join... [0.299814s] Building seed filter... [0.003016s] Searching alignments... [0.40326s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015601s] Building query seed array... [1.27669s] Computing hash join... [0.342846s] Building seed filter... [0.003495s] Searching alignments... [0.849927s] Deallocating buffers... [4.3e-05s] Computing alignments... [129.458s] Deallocating reference... [5e-05s] Loading reference sequences... [0.000104s] Deallocating buffers... [0.022783s] Deallocating queries... [0.03123s] Loading query sequences... [1.9e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000958s] Closing the database file... [2.1e-05s] Deallocating taxonomy... [8e-06s] Total time = 288.839s Reported 5335894 pairwise alignments, 5335894 HSPs. 5335894 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/132_R2_001.fastp-trim.202003180140.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/132_R2_001.fastp-trim.202003180140.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000116s] #Target sequences to report alignments for: 1 Opening the input file... [0.008597s] Opening the output file... [0.000448s] Loading query sequences... [69.2182s] Masking queries... [70.1525s] Building query seed set... [0.254858s] Algorithm: Double-indexed Building query histograms... [2.50206s] Allocating buffers... [0.000722s] Loading reference sequences... [0.013337s] Masking reference... [0.033882s] Initializing temporary storage... [0.005289s] Building reference histograms... [0.018482s] Allocating buffers... [0.000434s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.019132s] Building query seed array... [1.43437s] Computing hash join... [0.347875s] Building seed filter... [0.004094s] Searching alignments... [1.06999s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016256s] Building query seed array... [1.72197s] Computing hash join... [0.369723s] Building seed filter... [0.004486s] Searching alignments... [1.00034s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018089s] Building query seed array... [1.75748s] Computing hash join... [0.375552s] Building seed filter... [0.004061s] Searching alignments... [0.641231s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013829s] Building query seed array... [1.40665s] Computing hash join... [0.368285s] Building seed filter... [0.004067s] Searching alignments... [0.732863s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014581s] Building query seed array... [1.2764s] Computing hash join... [0.323194s] Building seed filter... [0.004208s] Searching alignments... [0.449025s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018102s] Building query seed array... [1.60688s] Computing hash join... [0.328541s] Building seed filter... [0.004267s] Searching alignments... [0.4469s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018371s] Building query seed array... [1.62386s] Computing hash join... [0.300163s] Building seed filter... [0.003968s] Searching alignments... [0.407059s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012405s] Building query seed array... [1.30869s] Computing hash join... [0.339827s] Building seed filter... [0.004208s] Searching alignments... [0.855766s] Deallocating buffers... [3.4e-05s] Computing alignments... [136.684s] Deallocating reference... [6.6e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.022483s] Deallocating queries... [0.032693s] Loading query sequences... [2.1e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.001177s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [3.4e-05s] Total time = 299.818s Reported 5295646 pairwise alignments, 5295646 HSPs. 5295646 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/151_R1_001.fastp-trim.202003180619.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/151_R1_001.fastp-trim.202003180619.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000298s] #Target sequences to report alignments for: 1 Opening the input file... [0.008346s] Opening the output file... [0.000413s] Loading query sequences... [87.0936s] Masking queries... [118.386s] Building query seed set... [0.290184s] Algorithm: Double-indexed Building query histograms... [2.964s] Allocating buffers... [0.001055s] Loading reference sequences... [0.023139s] Masking reference... [0.030341s] Initializing temporary storage... [0.005622s] Building reference histograms... [0.013303s] Allocating buffers... [0.000148s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.015679s] Building query seed array... [1.87823s] Computing hash join... [0.456845s] Building seed filter... [0.003495s] Searching alignments... [3.22119s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017938s] Building query seed array... [2.31843s] Computing hash join... [0.494077s] Building seed filter... [0.003834s] Searching alignments... [1.75795s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018543s] Building query seed array... [2.2938s] Computing hash join... [0.499538s] Building seed filter... [0.003556s] Searching alignments... [1.70824s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014811s] Building query seed array... [1.90496s] Computing hash join... [0.500531s] Building seed filter... [0.004004s] Searching alignments... [1.53054s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014398s] Building query seed array... [1.6768s] Computing hash join... [0.421397s] Building seed filter... [0.003387s] Searching alignments... [1.33248s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.020535s] Building query seed array... [2.09901s] Computing hash join... [0.441958s] Building seed filter... [0.003745s] Searching alignments... [1.25358s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018274s] Building query seed array... [2.11961s] Computing hash join... [0.444187s] Building seed filter... [0.00373s] Searching alignments... [1.25576s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014793s] Building query seed array... [1.67932s] Computing hash join... [0.44158s] Building seed filter... [0.003381s] Searching alignments... [1.13035s] Deallocating buffers... [0.000107s] Computing alignments... [164.078s] Deallocating reference... [5.1e-05s] Loading reference sequences... [8e-05s] Deallocating buffers... [0.026504s] Deallocating queries... [0.040352s] Loading query sequences... [2e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000161s] Closing the database file... [1.8e-05s] Deallocating taxonomy... [8e-06s] Total time = 406.244s Reported 8843255 pairwise alignments, 8843255 HSPs. 8843255 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/151_R2_001.fastp-trim.202003180619.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/151_R2_001.fastp-trim.202003180619.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.00029s] #Target sequences to report alignments for: 1 Opening the input file... [0.007043s] Opening the output file... [0.000433s] Loading query sequences... [86.9721s] Masking queries... [86.6454s] Building query seed set... [0.28913s] Algorithm: Double-indexed Building query histograms... [2.95287s] Allocating buffers... [0.001072s] Loading reference sequences... [0.056859s] Masking reference... [0.033707s] Initializing temporary storage... [0.00476s] Building reference histograms... [0.015416s] Allocating buffers... [0.000413s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.014321s] Building query seed array... [1.873s] Computing hash join... [0.464153s] Building seed filter... [0.003379s] Searching alignments... [3.16081s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018035s] Building query seed array... [2.2898s] Computing hash join... [0.499238s] Building seed filter... [0.004122s] Searching alignments... [1.76737s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016922s] Building query seed array... [2.2974s] Computing hash join... [0.508523s] Building seed filter... [0.004084s] Searching alignments... [1.705s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014879s] Building query seed array... [1.84255s] Computing hash join... [0.505338s] Building seed filter... [0.003807s] Searching alignments... [1.52276s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013522s] Building query seed array... [1.67313s] Computing hash join... [0.427952s] Building seed filter... [0.003899s] Searching alignments... [1.33825s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017772s] Building query seed array... [2.07552s] Computing hash join... [0.44355s] Building seed filter... [0.003436s] Searching alignments... [1.30952s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016598s] Building query seed array... [2.09946s] Computing hash join... [0.43802s] Building seed filter... [0.003368s] Searching alignments... [1.24871s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.01498s] Building query seed array... [1.67297s] Computing hash join... [0.431353s] Building seed filter... [0.003731s] Searching alignments... [1.17251s] Deallocating buffers... [3.5e-05s] Computing alignments... [159.503s] Deallocating reference... [3.7e-05s] Loading reference sequences... [7.4e-05s] Deallocating buffers... [0.025861s] Deallocating queries... [0.040784s] Loading query sequences... [2.1e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.000278s] Closing the database file... [5.6e-05s] Deallocating taxonomy... [3e-05s] Total time = 369.712s Reported 8838550 pairwise alignments, 8838550 HSPs. 8838550 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/173_R1_001.fastp-trim.202003181159.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/173_R1_001.fastp-trim.202003181159.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7.2e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.053812s] Opening the output file... [0.000464s] Loading query sequences... [78.2943s] Masking queries... [113.519s] Building query seed set... [0.282674s] Algorithm: Double-indexed Building query histograms... [2.44039s] Allocating buffers... [0.001056s] Loading reference sequences... [0.081136s] Masking reference... [0.031048s] Initializing temporary storage... [0.00474s] Building reference histograms... [0.010605s] Allocating buffers... [0.000151s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.010132s] Building query seed array... [1.55143s] Computing hash join... [0.362157s] Building seed filter... [0.003626s] Searching alignments... [0.679727s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.015955s] Building query seed array... [1.88088s] Computing hash join... [0.381983s] Building seed filter... [0.003486s] Searching alignments... [0.517975s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017737s] Building query seed array... [1.90146s] Computing hash join... [0.383173s] Building seed filter... [0.002998s] Searching alignments... [0.600796s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014722s] Building query seed array... [1.50632s] Computing hash join... [0.375387s] Building seed filter... [0.003483s] Searching alignments... [0.47903s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.0132s] Building query seed array... [1.36971s] Computing hash join... [0.319477s] Building seed filter... [0.00259s] Searching alignments... [0.670316s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017732s] Building query seed array... [1.72473s] Computing hash join... [0.324276s] Building seed filter... [0.003375s] Searching alignments... [0.259587s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017534s] Building query seed array... [1.77739s] Computing hash join... [0.321901s] Building seed filter... [0.002766s] Searching alignments... [0.465778s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014502s] Building query seed array... [1.38441s] Computing hash join... [0.324475s] Building seed filter... [0.002074s] Searching alignments... [0.345207s] Deallocating buffers... [5e-05s] Computing alignments... [155.38s] Deallocating reference... [5e-05s] Loading reference sequences... [8.9e-05s] Deallocating buffers... [0.02413s] Deallocating queries... [0.036186s] Loading query sequences... [2.1e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.001014s] Closing the database file... [5.7e-05s] Deallocating taxonomy... [3.1e-05s] Total time = 370.461s Reported 3343808 pairwise alignments, 3343808 HSPs. 3343808 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/173_R2_001.fastp-trim.202003181159.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/173_R2_001.fastp-trim.202003181159.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.00024s] #Target sequences to report alignments for: 1 Opening the input file... [0.008274s] Opening the output file... [0.00043s] Loading query sequences... [79.1844s] Masking queries... [114.944s] Building query seed set... [0.281665s] Algorithm: Double-indexed Building query histograms... [2.57987s] Allocating buffers... [0.001063s] Loading reference sequences... [0.020967s] Masking reference... [0.033139s] Initializing temporary storage... [0.003051s] Building reference histograms... [0.011796s] Allocating buffers... [0.000431s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.010496s] Building query seed array... [1.55801s] Computing hash join... [0.356654s] Building seed filter... [0.003205s] Searching alignments... [0.696228s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.019004s] Building query seed array... [1.8477s] Computing hash join... [0.382853s] Building seed filter... [0.004677s] Searching alignments... [0.504574s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017496s] Building query seed array... [1.90422s] Computing hash join... [0.379058s] Building seed filter... [0.005079s] Searching alignments... [0.594212s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015217s] Building query seed array... [1.54379s] Computing hash join... [0.376548s] Building seed filter... [0.004009s] Searching alignments... [0.481793s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015427s] Building query seed array... [1.4024s] Computing hash join... [0.332181s] Building seed filter... [0.004346s] Searching alignments... [0.666647s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017683s] Building query seed array... [1.72998s] Computing hash join... [0.327489s] Building seed filter... [0.005292s] Searching alignments... [0.263096s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017594s] Building query seed array... [1.71008s] Computing hash join... [0.329728s] Building seed filter... [0.003976s] Searching alignments... [0.475221s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015236s] Building query seed array... [1.37058s] Computing hash join... [0.326319s] Building seed filter... [0.003547s] Searching alignments... [0.346659s] Deallocating buffers... [1.5e-05s] Computing alignments... [153.83s] Deallocating reference... [4.9e-05s] Loading reference sequences... [0.000106s] Deallocating buffers... [0.022889s] Deallocating queries... [0.036544s] Loading query sequences... [1.9e-05s] Closing the input file... [3.2e-05s] Closing the output file... [0.000246s] Closing the database file... [1.9e-05s] Deallocating taxonomy... [7e-06s] Total time = 371.287s Reported 3331791 pairwise alignments, 3331791 HSPs. 3331791 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/178_R1_001.fastp-trim.202003181815.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/178_R1_001.fastp-trim.202003181815.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000116s] #Target sequences to report alignments for: 1 Opening the input file... [0.00703s] Opening the output file... [0.000368s] Loading query sequences... [74.6844s] Masking queries... [105.734s] Building query seed set... [0.293399s] Algorithm: Double-indexed Building query histograms... [2.77857s] Allocating buffers... [0.001056s] Loading reference sequences... [0.021278s] Masking reference... [0.031131s] Initializing temporary storage... [0.002846s] Building reference histograms... [0.008007s] Allocating buffers... [0.000421s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.007996s] Building query seed array... [1.58122s] Computing hash join... [0.391331s] Building seed filter... [0.004426s] Searching alignments... [2.04193s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018999s] Building query seed array... [1.94056s] Computing hash join... [0.407652s] Building seed filter... [0.002882s] Searching alignments... [1.34395s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.01847s] Building query seed array... [1.98494s] Computing hash join... [0.417235s] Building seed filter... [0.004218s] Searching alignments... [1.64409s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.016096s] Building query seed array... [1.54788s] Computing hash join... [0.442807s] Building seed filter... [0.004143s] Searching alignments... [1.0417s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015313s] Building query seed array... [1.42109s] Computing hash join... [0.355118s] Building seed filter... [0.003599s] Searching alignments... [0.719399s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018074s] Building query seed array... [1.73279s] Computing hash join... [0.387195s] Building seed filter... [0.003504s] Searching alignments... [1.04761s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.019835s] Building query seed array... [1.76555s] Computing hash join... [0.350379s] Building seed filter... [0.002957s] Searching alignments... [0.706291s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014692s] Building query seed array... [1.41094s] Computing hash join... [0.409723s] Building seed filter... [0.004093s] Searching alignments... [1.11097s] Deallocating buffers... [4.9e-05s] Computing alignments... [131.566s] Deallocating reference... [4.7e-05s] Loading reference sequences... [9.5e-05s] Deallocating buffers... [0.020681s] Deallocating queries... [0.033485s] Loading query sequences... [1.9e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.00078s] Closing the database file... [2e-05s] Deallocating taxonomy... [8e-06s] Total time = 341.768s Reported 7049024 pairwise alignments, 7049024 HSPs. 7049024 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/178_R2_001.fastp-trim.202003181815.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/178_R2_001.fastp-trim.202003181815.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.8e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.006929s] Opening the output file... [0.000449s] Loading query sequences... [74.5223s] Masking queries... [104.422s] Building query seed set... [0.28238s] Algorithm: Double-indexed Building query histograms... [2.6408s] Allocating buffers... [0.001059s] Loading reference sequences... [0.02199s] Masking reference... [0.030273s] Initializing temporary storage... [0.004934s] Building reference histograms... [0.007973s] Allocating buffers... [0.000139s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.006642s] Building query seed array... [1.57587s] Computing hash join... [0.400572s] Building seed filter... [0.00438s] Searching alignments... [2.05506s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017351s] Building query seed array... [1.89763s] Computing hash join... [0.406199s] Building seed filter... [0.003341s] Searching alignments... [1.326s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017986s] Building query seed array... [1.9779s] Computing hash join... [0.409945s] Building seed filter... [0.004378s] Searching alignments... [1.58594s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015351s] Building query seed array... [1.60162s] Computing hash join... [0.427121s] Building seed filter... [0.003245s] Searching alignments... [0.990915s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015219s] Building query seed array... [1.41372s] Computing hash join... [0.362016s] Building seed filter... [0.00343s] Searching alignments... [0.697687s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016565s] Building query seed array... [1.75189s] Computing hash join... [0.384041s] Building seed filter... [0.0031s] Searching alignments... [0.961058s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018669s] Building query seed array... [1.78215s] Computing hash join... [0.355045s] Building seed filter... [0.003709s] Searching alignments... [0.697526s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.01535s] Building query seed array... [1.40171s] Computing hash join... [0.369475s] Building seed filter... [0.004296s] Searching alignments... [1.0788s] Deallocating buffers... [4.8e-05s] Computing alignments... [143.458s] Deallocating reference... [4.7e-05s] Loading reference sequences... [9.6e-05s] Deallocating buffers... [0.02145s] Deallocating queries... [0.032655s] Loading query sequences... [1.9e-05s] Closing the input file... [3.3e-05s] Closing the output file... [0.000239s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [7e-06s] Total time = 351.748s Reported 6897166 pairwise alignments, 6897166 HSPs. 6897166 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/221_R1_001.fastp-trim.202003182309.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/221_R1_001.fastp-trim.202003182309.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.008466s] Opening the output file... [0.00043s] Loading query sequences... [65.5674s] Masking queries... [67.1624s] Building query seed set... [0.279466s] Algorithm: Double-indexed Building query histograms... [2.13643s] Allocating buffers... [0.001049s] Loading reference sequences... [0.022027s] Masking reference... [0.032622s] Initializing temporary storage... [0.004375s] Building reference histograms... [0.019102s] Allocating buffers... [0.000447s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.019815s] Building query seed array... [1.39738s] Computing hash join... [0.341833s] Building seed filter... [0.004432s] Searching alignments... [1.98864s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016112s] Building query seed array... [1.6917s] Computing hash join... [0.372247s] Building seed filter... [0.004428s] Searching alignments... [1.46325s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018201s] Building query seed array... [1.76948s] Computing hash join... [0.354888s] Building seed filter... [0.004545s] Searching alignments... [2.04175s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.022738s] Building query seed array... [1.38614s] Computing hash join... [0.379707s] Building seed filter... [0.00428s] Searching alignments... [1.10692s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015091s] Building query seed array... [1.25195s] Computing hash join... [0.3098s] Building seed filter... [0.004424s] Searching alignments... [1.8906s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017841s] Building query seed array... [1.53285s] Computing hash join... [0.339192s] Building seed filter... [0.004492s] Searching alignments... [0.754967s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.015824s] Building query seed array... [1.55769s] Computing hash join... [0.302426s] Building seed filter... [0.00396s] Searching alignments... [0.700173s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014691s] Building query seed array... [1.2668s] Computing hash join... [0.316092s] Building seed filter... [0.004682s] Searching alignments... [0.673423s] Deallocating buffers... [4.7e-05s] Computing alignments... [120.776s] Deallocating reference... [6.7e-05s] Loading reference sequences... [7.9e-05s] Deallocating buffers... [0.019257s] Deallocating queries... [0.030316s] Loading query sequences... [2e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.000295s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 281.619s Reported 7202734 pairwise alignments, 7202734 HSPs. 7202734 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/221_R2_001.fastp-trim.202003182309.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/221_R2_001.fastp-trim.202003182309.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.011239s] Opening the output file... [0.000967s] Loading query sequences... [67.9381s] Masking queries... [93.5475s] Building query seed set... [0.299668s] Algorithm: Double-indexed Building query histograms... [2.20275s] Allocating buffers... [0.001106s] Loading reference sequences... [0.024672s] Masking reference... [0.036207s] Initializing temporary storage... [0.002577s] Building reference histograms... [0.01052s] Allocating buffers... [0.00044s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.018418s] Building query seed array... [1.40951s] Computing hash join... [0.364938s] Building seed filter... [0.003903s] Searching alignments... [1.999s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.019056s] Building query seed array... [1.68177s] Computing hash join... [0.378199s] Building seed filter... [0.003942s] Searching alignments... [1.46116s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019747s] Building query seed array... [1.79281s] Computing hash join... [0.360213s] Building seed filter... [0.004418s] Searching alignments... [2.00508s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.024595s] Building query seed array... [1.38751s] Computing hash join... [0.378419s] Building seed filter... [0.004181s] Searching alignments... [1.11065s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.01522s] Building query seed array... [1.24131s] Computing hash join... [0.314491s] Building seed filter... [0.002965s] Searching alignments... [1.81331s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.01821s] Building query seed array... [1.5694s] Computing hash join... [0.340451s] Building seed filter... [0.003731s] Searching alignments... [0.757511s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.01692s] Building query seed array... [1.55731s] Computing hash join... [0.309332s] Building seed filter... [0.003852s] Searching alignments... [0.610986s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015419s] Building query seed array... [1.26097s] Computing hash join... [0.317852s] Building seed filter... [0.004126s] Searching alignments... [0.653754s] Deallocating buffers... [5.4e-05s] Computing alignments... [121.857s] Deallocating reference... [7e-05s] Loading reference sequences... [9.6e-05s] Deallocating buffers... [0.021212s] Deallocating queries... [0.030227s] Loading query sequences... [2e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000964s] Closing the database file... [2e-05s] Deallocating taxonomy... [9e-06s] Total time = 311.43s Reported 7161231 pairwise alignments, 7161231 HSPs. 7161231 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/222_R1_001.fastp-trim.202003182800.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/222_R1_001.fastp-trim.202003182800.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000248s] #Target sequences to report alignments for: 1 Opening the input file... [0.005274s] Opening the output file... [0.000398s] Loading query sequences... [112.377s] Masking queries... [140.307s] Building query seed set... [0.47521s] Algorithm: Double-indexed Building query histograms... [2.28277s] Allocating buffers... [0.001051s] Loading reference sequences... [0.020933s] Masking reference... [0.030689s] Initializing temporary storage... [0.003236s] Building reference histograms... [0.008167s] Allocating buffers... [0.000134s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.00964s] Building query seed array... [1.28576s] Computing hash join... [0.206121s] Building seed filter... [0.002649s] Searching alignments... [1.33377s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017408s] Building query seed array... [1.44556s] Computing hash join... [0.198614s] Building seed filter... [0.004253s] Searching alignments... [0.763423s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018424s] Building query seed array... [1.44613s] Computing hash join... [0.190019s] Building seed filter... [0.003006s] Searching alignments... [0.683298s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.016139s] Building query seed array... [1.30618s] Computing hash join... [0.20172s] Building seed filter... [0.003157s] Searching alignments... [0.608066s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014717s] Building query seed array... [1.16373s] Computing hash join... [0.164382s] Building seed filter... [0.003187s] Searching alignments... [0.60699s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.019285s] Building query seed array... [1.31887s] Computing hash join... [0.168264s] Building seed filter... [0.003341s] Searching alignments... [0.510425s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018797s] Building query seed array... [1.32941s] Computing hash join... [0.163721s] Building seed filter... [0.002512s] Searching alignments... [0.544423s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014056s] Building query seed array... [1.16656s] Computing hash join... [0.163375s] Building seed filter... [0.002659s] Searching alignments... [0.481198s] Deallocating buffers... [3.5e-05s] Computing alignments... [243.108s] Deallocating reference... [5.2e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.013737s] Deallocating queries... [0.054838s] Loading query sequences... [1.9e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.027338s] Closing the database file... [6.5e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 516.709s Reported 3062544 pairwise alignments, 3062544 HSPs. 3062544 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/222_R2_001.fastp-trim.202003182800.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/222_R2_001.fastp-trim.202003182800.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000251s] #Target sequences to report alignments for: 1 Opening the input file... [0.006362s] Opening the output file... [0.000436s] Loading query sequences... [115.455s] Masking queries... [135.982s] Building query seed set... [0.442482s] Algorithm: Double-indexed Building query histograms... [2.27842s] Allocating buffers... [0.001053s] Loading reference sequences... [0.022219s] Masking reference... [0.031497s] Initializing temporary storage... [0.005699s] Building reference histograms... [0.014302s] Allocating buffers... [0.000297s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.015644s] Building query seed array... [1.29157s] Computing hash join... [0.199012s] Building seed filter... [0.005109s] Searching alignments... [1.31566s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.019754s] Building query seed array... [1.43759s] Computing hash join... [0.198959s] Building seed filter... [0.008095s] Searching alignments... [0.758192s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019536s] Building query seed array... [1.43766s] Computing hash join... [0.19467s] Building seed filter... [0.005107s] Searching alignments... [0.68079s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015877s] Building query seed array... [1.31478s] Computing hash join... [0.20748s] Building seed filter... [0.007148s] Searching alignments... [0.609339s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015713s] Building query seed array... [1.18692s] Computing hash join... [0.170701s] Building seed filter... [0.005654s] Searching alignments... [0.468424s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016929s] Building query seed array... [1.31311s] Computing hash join... [0.170722s] Building seed filter... [0.005135s] Searching alignments... [0.503105s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017537s] Building query seed array... [1.32353s] Computing hash join... [0.17392s] Building seed filter... [0.005194s] Searching alignments... [0.534849s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015655s] Building query seed array... [1.17092s] Computing hash join... [0.173413s] Building seed filter... [0.004922s] Searching alignments... [0.424945s] Deallocating buffers... [1.9e-05s] Computing alignments... [244.032s] Deallocating reference... [4.5e-05s] Loading reference sequences... [9.2e-05s] Deallocating buffers... [0.014611s] Deallocating queries... [0.054364s] Loading query sequences... [1.8e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.000333s] Closing the database file... [1.6e-05s] Deallocating taxonomy... [7e-06s] Total time = 516.179s Reported 3045492 pairwise alignments, 3045492 HSPs. 3045492 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/254_R1_001.fastp-trim.202003184228.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/254_R1_001.fastp-trim.202003184228.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.8e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.006324s] Opening the output file... [0.00033s] Loading query sequences... [44.1484s] Masking queries... [58.9196s] Building query seed set... [0.214754s] Algorithm: Double-indexed Building query histograms... [1.50874s] Allocating buffers... [0.001055s] Loading reference sequences... [0.021831s] Masking reference... [0.031918s] Initializing temporary storage... [0.003978s] Building reference histograms... [0.008897s] Allocating buffers... [0.000136s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.005488s] Building query seed array... [0.952196s] Computing hash join... [0.247822s] Building seed filter... [0.002377s] Searching alignments... [1.39963s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.01823s] Building query seed array... [1.14754s] Computing hash join... [0.265688s] Building seed filter... [0.003426s] Searching alignments... [0.855028s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018319s] Building query seed array... [1.41587s] Computing hash join... [0.249937s] Building seed filter... [0.002245s] Searching alignments... [1.14225s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014724s] Building query seed array... [0.947552s] Computing hash join... [0.250964s] Building seed filter... [0.002653s] Searching alignments... [0.954182s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.01449s] Building query seed array... [0.857279s] Computing hash join... [0.226222s] Building seed filter... [0.002522s] Searching alignments... [1.09235s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017765s] Building query seed array... [1.06386s] Computing hash join... [0.232973s] Building seed filter... [0.003494s] Searching alignments... [0.573394s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018073s] Building query seed array... [1.10123s] Computing hash join... [0.222617s] Building seed filter... [0.002661s] Searching alignments... [0.754289s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014606s] Building query seed array... [0.870369s] Computing hash join... [0.236121s] Building seed filter... [0.003247s] Searching alignments... [0.661723s] Deallocating buffers... [4.6e-05s] Computing alignments... [79.717s] Deallocating reference... [4.5e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.015304s] Deallocating queries... [0.023071s] Loading query sequences... [2.1e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.001044s] Closing the database file... [5.9e-05s] Deallocating taxonomy... [3.1e-05s] Total time = 202.625s Reported 4498923 pairwise alignments, 4498923 HSPs. 4498923 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/254_R2_001.fastp-trim.202003184228.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/254_R2_001.fastp-trim.202003184228.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [8.6e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.005514s] Opening the output file... [0.000919s] Loading query sequences... [44.929s] Masking queries... [43.116s] Building query seed set... [0.185121s] Algorithm: Double-indexed Building query histograms... [1.50466s] Allocating buffers... [0.00102s] Loading reference sequences... [0.021093s] Masking reference... [0.032388s] Initializing temporary storage... [0.002744s] Building reference histograms... [0.007682s] Allocating buffers... [0.000135s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.007137s] Building query seed array... [0.949085s] Computing hash join... [0.249869s] Building seed filter... [0.002599s] Searching alignments... [1.36023s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.019552s] Building query seed array... [1.17796s] Computing hash join... [0.283537s] Building seed filter... [0.003532s] Searching alignments... [0.823188s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019166s] Building query seed array... [1.19367s] Computing hash join... [0.263182s] Building seed filter... [0.003285s] Searching alignments... [1.07372s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015256s] Building query seed array... [0.93425s] Computing hash join... [0.258339s] Building seed filter... [0.00398s] Searching alignments... [0.931134s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015548s] Building query seed array... [0.855034s] Computing hash join... [0.231855s] Building seed filter... [0.003182s] Searching alignments... [1.05107s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018621s] Building query seed array... [1.09589s] Computing hash join... [0.231213s] Building seed filter... [0.00376s] Searching alignments... [0.52864s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016176s] Building query seed array... [1.07886s] Computing hash join... [0.218263s] Building seed filter... [0.002935s] Searching alignments... [0.730501s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015156s] Building query seed array... [0.860038s] Computing hash join... [0.215685s] Building seed filter... [0.003394s] Searching alignments... [0.625337s] Deallocating buffers... [4.6e-05s] Computing alignments... [81.1108s] Deallocating reference... [4.5e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.017282s] Deallocating queries... [0.022213s] Loading query sequences... [1.8e-05s] Closing the input file... [3.3e-05s] Closing the output file... [0.000237s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [8e-06s] Total time = 188.466s Reported 4457885 pairwise alignments, 4457885 HSPs. 4457885 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/272_R1_001.fastp-trim.202003184536.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/272_R1_001.fastp-trim.202003184536.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7.5e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.007391s] Opening the output file... [0.000486s] Loading query sequences... [57.8947s] Masking queries... [103.866s] Building query seed set... [0.246029s] Algorithm: Double-indexed Building query histograms... [1.4512s] Allocating buffers... [0.00106s] Loading reference sequences... [0.022845s] Masking reference... [0.030509s] Initializing temporary storage... [0.004951s] Building reference histograms... [0.0083s] Allocating buffers... [0.00015s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.006936s] Building query seed array... [0.829905s] Computing hash join... [0.18353s] Building seed filter... [0.003177s] Searching alignments... [1.0057s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.026217s] Building query seed array... [0.934198s] Computing hash join... [0.174831s] Building seed filter... [0.003089s] Searching alignments... [0.757041s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018935s] Building query seed array... [0.942786s] Computing hash join... [0.165655s] Building seed filter... [0.003534s] Searching alignments... [0.654637s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014962s] Building query seed array... [0.802425s] Computing hash join... [0.169996s] Building seed filter... [0.004058s] Searching alignments... [0.549588s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015217s] Building query seed array... [0.707761s] Computing hash join... [0.137829s] Building seed filter... [0.00261s] Searching alignments... [0.470917s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015244s] Building query seed array... [0.859437s] Computing hash join... [0.142851s] Building seed filter... [0.002898s] Searching alignments... [0.348186s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018559s] Building query seed array... [0.835895s] Computing hash join... [0.139021s] Building seed filter... [0.002572s] Searching alignments... [0.349643s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014037s] Building query seed array... [0.695951s] Computing hash join... [0.136833s] Building seed filter... [0.002699s] Searching alignments... [0.322034s] Deallocating buffers... [4.3e-05s] Computing alignments... [128.235s] Deallocating reference... [4.4e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.013639s] Deallocating queries... [0.030533s] Loading query sequences... [2.2e-05s] Closing the input file... [3.8e-05s] Closing the output file... [0.000332s] Closing the database file... [2.1e-05s] Deallocating taxonomy... [9e-06s] Total time = 304.524s Reported 1975820 pairwise alignments, 1975820 HSPs. 1975820 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/272_R2_001.fastp-trim.202003184536.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/272_R2_001.fastp-trim.202003184536.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000162s] #Target sequences to report alignments for: 1 Opening the input file... [0.007877s] Opening the output file... [0.000429s] Loading query sequences... [58.691s] Masking queries... [71.266s] Building query seed set... [0.247605s] Algorithm: Double-indexed Building query histograms... [1.4733s] Allocating buffers... [0.001031s] Loading reference sequences... [0.022828s] Masking reference... [0.035802s] Initializing temporary storage... [0.00484s] Building reference histograms... [0.013148s] Allocating buffers... [0.000431s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.012465s] Building query seed array... [0.792729s] Computing hash join... [0.19364s] Building seed filter... [0.002404s] Searching alignments... [0.987343s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.019158s] Building query seed array... [0.917345s] Computing hash join... [0.171464s] Building seed filter... [0.003143s] Searching alignments... [0.754155s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017393s] Building query seed array... [0.93057s] Computing hash join... [0.165206s] Building seed filter... [0.002337s] Searching alignments... [0.652398s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.01464s] Building query seed array... [0.791905s] Computing hash join... [0.170282s] Building seed filter... [0.003285s] Searching alignments... [0.531625s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.01441s] Building query seed array... [0.747773s] Computing hash join... [0.13622s] Building seed filter... [0.003541s] Searching alignments... [0.559264s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016479s] Building query seed array... [0.810304s] Computing hash join... [0.143025s] Building seed filter... [0.002405s] Searching alignments... [0.342038s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017978s] Building query seed array... [0.826895s] Computing hash join... [0.132261s] Building seed filter... [0.003171s] Searching alignments... [0.346244s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.01284s] Building query seed array... [0.686193s] Computing hash join... [0.136937s] Building seed filter... [0.010232s] Searching alignments... [0.339842s] Deallocating buffers... [6.4e-05s] Computing alignments... [129.971s] Deallocating reference... [5e-05s] Loading reference sequences... [8.5e-05s] Deallocating buffers... [0.011215s] Deallocating queries... [0.032296s] Loading query sequences... [1.9e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.000251s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [7e-06s] Total time = 274.434s Reported 1964059 pairwise alignments, 1964059 HSPs. 1964059 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/280_R1_001.fastp-trim.202003185124.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/280_R1_001.fastp-trim.202003185124.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [8.6e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.00786s] Opening the output file... [0.000358s] Loading query sequences... [126.688s] Masking queries... [153.397s] Building query seed set... [0.481369s] Algorithm: Double-indexed Building query histograms... [2.54888s] Allocating buffers... [0.001054s] Loading reference sequences... [0.021669s] Masking reference... [0.030933s] Initializing temporary storage... [0.00264s] Building reference histograms... [0.008181s] Allocating buffers... [0.000148s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009764s] Building query seed array... [1.4049s] Computing hash join... [0.203056s] Building seed filter... [0.003043s] Searching alignments... [1.66704s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018802s] Building query seed array... [1.54052s] Computing hash join... [0.191769s] Building seed filter... [0.002878s] Searching alignments... [1.03774s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019312s] Building query seed array... [1.53834s] Computing hash join... [0.190299s] Building seed filter... [0.003314s] Searching alignments... [0.888282s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014847s] Building query seed array... [1.38681s] Computing hash join... [0.195584s] Building seed filter... [0.002942s] Searching alignments... [0.773286s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014596s] Building query seed array... [1.26282s] Computing hash join... [0.163971s] Building seed filter... [0.002669s] Searching alignments... [0.664927s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017004s] Building query seed array... [1.42s] Computing hash join... [0.17899s] Building seed filter... [0.002651s] Searching alignments... [0.509763s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017857s] Building query seed array... [1.43332s] Computing hash join... [0.168858s] Building seed filter... [0.003171s] Searching alignments... [0.715494s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.013737s] Building query seed array... [1.29036s] Computing hash join... [0.163014s] Building seed filter... [0.002442s] Searching alignments... [0.597225s] Deallocating buffers... [4.7e-05s] Computing alignments... [275.929s] Deallocating reference... [5.3e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.011848s] Deallocating queries... [0.060713s] Loading query sequences... [1.7e-05s] Closing the input file... [3.1e-05s] Closing the output file... [0.000321s] Closing the database file... [1.5e-05s] Deallocating taxonomy... [7e-06s] Total time = 579.371s Reported 2607458 pairwise alignments, 2607458 HSPs. 2607458 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/280_R2_001.fastp-trim.202003185124.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/280_R2_001.fastp-trim.202003185124.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000236s] #Target sequences to report alignments for: 1 Opening the input file... [0.007462s] Opening the output file... [0.000433s] Loading query sequences... [128.719s] Masking queries... [155.741s] Building query seed set... [0.531288s] Algorithm: Double-indexed Building query histograms... [2.50339s] Allocating buffers... [0.000914s] Loading reference sequences... [0.019875s] Masking reference... [0.031739s] Initializing temporary storage... [0.002608s] Building reference histograms... [0.01079s] Allocating buffers... [0.000383s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.010562s] Building query seed array... [1.3993s] Computing hash join... [0.199713s] Building seed filter... [0.002692s] Searching alignments... [1.57352s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018208s] Building query seed array... [1.54276s] Computing hash join... [0.196505s] Building seed filter... [0.003175s] Searching alignments... [1.01855s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.015889s] Building query seed array... [1.54794s] Computing hash join... [0.188081s] Building seed filter... [0.003248s] Searching alignments... [0.889106s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014577s] Building query seed array... [1.37979s] Computing hash join... [0.187084s] Building seed filter... [0.003628s] Searching alignments... [0.759082s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.012574s] Building query seed array... [1.27353s] Computing hash join... [0.16116s] Building seed filter... [0.003252s] Searching alignments... [0.566936s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018113s] Building query seed array... [1.4111s] Computing hash join... [0.17045s] Building seed filter... [0.004555s] Searching alignments... [0.56302s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016583s] Building query seed array... [1.46959s] Computing hash join... [0.160961s] Building seed filter... [0.004512s] Searching alignments... [0.707137s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014589s] Building query seed array... [1.27804s] Computing hash join... [0.159203s] Building seed filter... [0.003413s] Searching alignments... [0.620716s] Deallocating buffers... [4.7e-05s] Computing alignments... [274.639s] Deallocating reference... [6.8e-05s] Loading reference sequences... [8.9e-05s] Deallocating buffers... [0.011962s] Deallocating queries... [0.063779s] Loading query sequences... [2.9e-05s] Closing the input file... [4.1e-05s] Closing the output file... [0.000295s] Closing the database file... [1.9e-05s] Deallocating taxonomy... [9e-06s] Total time = 582.314s Reported 2590740 pairwise alignments, 2590740 HSPs. 2590740 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/294_R1_001.fastp-trim.202003180701.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/294_R1_001.fastp-trim.202003180701.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.8e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.008896s] Opening the output file... [0.000365s] Loading query sequences... [75.3245s] Masking queries... [71.3557s] Building query seed set... [0.287589s] Algorithm: Double-indexed Building query histograms... [2.90282s] Allocating buffers... [0.001062s] Loading reference sequences... [0.020698s] Masking reference... [0.032941s] Initializing temporary storage... [0.003769s] Building reference histograms... [0.008656s] Allocating buffers... [0.00043s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.017699s] Building query seed array... [1.67609s] Computing hash join... [0.409752s] Building seed filter... [0.004323s] Searching alignments... [1.67396s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018074s] Building query seed array... [2.06225s] Computing hash join... [0.434962s] Building seed filter... [0.004413s] Searching alignments... [1.12495s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018126s] Building query seed array... [2.12376s] Computing hash join... [0.430625s] Building seed filter... [0.004481s] Searching alignments... [1.22571s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.018314s] Building query seed array... [1.64274s] Computing hash join... [0.449383s] Building seed filter... [0.004028s] Searching alignments... [2.02672s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014753s] Building query seed array... [1.5076s] Computing hash join... [0.379562s] Building seed filter... [0.004352s] Searching alignments... [0.734677s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017913s] Building query seed array... [1.86841s] Computing hash join... [0.409691s] Building seed filter... [0.004177s] Searching alignments... [0.719312s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018103s] Building query seed array... [1.90662s] Computing hash join... [0.387867s] Building seed filter... [0.003619s] Searching alignments... [0.698931s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014021s] Building query seed array... [1.50933s] Computing hash join... [0.397428s] Building seed filter... [0.004184s] Searching alignments... [1.33603s] Deallocating buffers... [5.1e-05s] Computing alignments... [137.884s] Deallocating reference... [4.3e-05s] Loading reference sequences... [7.6e-05s] Deallocating buffers... [0.024108s] Deallocating queries... [0.035743s] Loading query sequences... [2.1e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.000928s] Closing the database file... [1.9e-05s] Deallocating taxonomy... [9e-06s] Total time = 315.436s Reported 7609476 pairwise alignments, 7609476 HSPs. 7609476 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/294_R2_001.fastp-trim.202003180701.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/294_R2_001.fastp-trim.202003180701.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000299s] #Target sequences to report alignments for: 1 Opening the input file... [0.008669s] Opening the output file... [0.000365s] Loading query sequences... [76.2142s] Masking queries... [71.4441s] Building query seed set... [0.260239s] Algorithm: Double-indexed Building query histograms... [2.87849s] Allocating buffers... [0.001059s] Loading reference sequences... [0.024107s] Masking reference... [0.034381s] Initializing temporary storage... [0.002963s] Building reference histograms... [0.008151s] Allocating buffers... [0.000428s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.012149s] Building query seed array... [1.72348s] Computing hash join... [0.408091s] Building seed filter... [0.003282s] Searching alignments... [1.62345s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.0189s] Building query seed array... [2.07381s] Computing hash join... [0.42972s] Building seed filter... [0.004229s] Searching alignments... [1.12305s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018488s] Building query seed array... [2.09188s] Computing hash join... [0.452005s] Building seed filter... [0.003453s] Searching alignments... [1.2166s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.017439s] Building query seed array... [1.67766s] Computing hash join... [0.472879s] Building seed filter... [0.003586s] Searching alignments... [2.07645s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015435s] Building query seed array... [1.50391s] Computing hash join... [0.392069s] Building seed filter... [0.004256s] Searching alignments... [0.710009s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018178s] Building query seed array... [1.86404s] Computing hash join... [0.408557s] Building seed filter... [0.003604s] Searching alignments... [0.702272s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018095s] Building query seed array... [1.89783s] Computing hash join... [0.359356s] Building seed filter... [0.003231s] Searching alignments... [0.662856s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015209s] Building query seed array... [1.50697s] Computing hash join... [0.380914s] Building seed filter... [0.003093s] Searching alignments... [1.29976s] Deallocating buffers... [4.3e-05s] Computing alignments... [125.901s] Deallocating reference... [4.6e-05s] Loading reference sequences... [8.9e-05s] Deallocating buffers... [0.021191s] Deallocating queries... [0.033782s] Loading query sequences... [1.9e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.000137s] Closing the database file... [1.8e-05s] Deallocating taxonomy... [8e-06s] Total time = 304.27s Reported 7580736 pairwise alignments, 7580736 HSPs. 7580736 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/304428_S1_L001_R1_001.fastp-trim.201912183855.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/304428_S1_L001_R1_001.fastp-trim.201912183855.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000149s] #Target sequences to report alignments for: 1 Opening the input file... [0.006877s] Opening the output file... [0.000415s] Loading query sequences... [70.1384s] Masking queries... [71.2169s] Building query seed set... [0.269106s] Algorithm: Double-indexed Building query histograms... [2.18699s] Allocating buffers... [0.001066s] Loading reference sequences... [0.021036s] Masking reference... [0.031556s] Initializing temporary storage... [0.00507s] Building reference histograms... [0.009511s] Allocating buffers... [0.000137s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.006454s] Building query seed array... [1.371s] Computing hash join... [0.333861s] Building seed filter... [0.002806s] Searching alignments... [1.36651s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016626s] Building query seed array... [1.6369s] Computing hash join... [0.370968s] Building seed filter... [0.003361s] Searching alignments... [0.840781s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016199s] Building query seed array... [1.68579s] Computing hash join... [0.364256s] Building seed filter... [0.003277s] Searching alignments... [0.740528s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013545s] Building query seed array... [1.33036s] Computing hash join... [0.363836s] Building seed filter... [0.002875s] Searching alignments... [0.693059s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.012698s] Building query seed array... [1.19662s] Computing hash join... [0.315632s] Building seed filter... [0.003235s] Searching alignments... [0.607267s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017553s] Building query seed array... [1.53427s] Computing hash join... [0.312262s] Building seed filter... [0.003313s] Searching alignments... [0.497072s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017523s] Building query seed array... [1.53475s] Computing hash join... [0.303502s] Building seed filter... [0.002726s] Searching alignments... [0.55625s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015252s] Building query seed array... [1.20273s] Computing hash join... [0.313353s] Building seed filter... [0.002841s] Searching alignments... [0.48904s] Deallocating buffers... [4.7e-05s] Computing alignments... [149.202s] Deallocating reference... [4.6e-05s] Loading reference sequences... [0.000117s] Deallocating buffers... [0.018886s] Deallocating queries... [0.032729s] Loading query sequences... [2.1e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.000344s] Closing the database file... [5.9e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 313.475s Reported 8561339 pairwise alignments, 8561339 HSPs. 8561339 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/304428_S1_L001_R2_001.fastp-trim.201912183855.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/304428_S1_L001_R2_001.fastp-trim.201912183855.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000319s] #Target sequences to report alignments for: 1 Opening the input file... [0.006242s] Opening the output file... [0.000381s] Loading query sequences... [71.1803s] Masking queries... [122.712s] Building query seed set... [0.272811s] Algorithm: Double-indexed Building query histograms... [2.23971s] Allocating buffers... [0.001061s] Loading reference sequences... [0.020703s] Masking reference... [0.032051s] Initializing temporary storage... [0.003259s] Building reference histograms... [0.007936s] Allocating buffers... [0.00014s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.007261s] Building query seed array... [1.4031s] Computing hash join... [0.349134s] Building seed filter... [0.003076s] Searching alignments... [1.47062s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.019591s] Building query seed array... [1.72688s] Computing hash join... [0.387205s] Building seed filter... [0.003548s] Searching alignments... [0.898029s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018172s] Building query seed array... [1.75569s] Computing hash join... [0.380614s] Building seed filter... [0.003164s] Searching alignments... [0.756346s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.01471s] Building query seed array... [1.37141s] Computing hash join... [0.371109s] Building seed filter... [0.003496s] Searching alignments... [0.733197s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013849s] Building query seed array... [1.21436s] Computing hash join... [0.310922s] Building seed filter... [0.00332s] Searching alignments... [0.60255s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017911s] Building query seed array... [1.53496s] Computing hash join... [0.327188s] Building seed filter... [0.002917s] Searching alignments... [0.54601s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.0172s] Building query seed array... [1.55141s] Computing hash join... [0.319604s] Building seed filter... [0.003217s] Searching alignments... [0.64023s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015778s] Building query seed array... [1.23727s] Computing hash join... [0.319884s] Building seed filter... [0.002962s] Searching alignments... [0.541302s] Deallocating buffers... [6.2e-05s] Computing alignments... [154.566s] Deallocating reference... [4.7e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.019451s] Deallocating queries... [0.032187s] Loading query sequences... [1.7e-05s] Closing the input file... [3.2e-05s] Closing the output file... [0.000372s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [7e-06s] Total time = 372.226s Reported 8882441 pairwise alignments, 8882441 HSPs. 8882441 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/304428_S1_L002_R1_001.fastp-trim.201912184416.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/304428_S1_L002_R1_001.fastp-trim.201912184416.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000212s] #Target sequences to report alignments for: 1 Opening the input file... [0.007286s] Opening the output file... [0.001086s] Loading query sequences... [69.1841s] Masking queries... [68.2075s] Building query seed set... [0.25806s] Algorithm: Double-indexed Building query histograms... [2.11827s] Allocating buffers... [0.001005s] Loading reference sequences... [0.021258s] Masking reference... [0.031501s] Initializing temporary storage... [0.005269s] Building reference histograms... [0.012202s] Allocating buffers... [0.000137s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.00665s] Building query seed array... [1.33336s] Computing hash join... [0.336716s] Building seed filter... [0.003008s] Searching alignments... [1.37548s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.015917s] Building query seed array... [1.59127s] Computing hash join... [0.369044s] Building seed filter... [0.003079s] Searching alignments... [0.819049s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016558s] Building query seed array... [1.61993s] Computing hash join... [0.360704s] Building seed filter... [0.003256s] Searching alignments... [0.71549s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014432s] Building query seed array... [1.2859s] Computing hash join... [0.340137s] Building seed filter... [0.003061s] Searching alignments... [0.664532s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013854s] Building query seed array... [1.15353s] Computing hash join... [0.294709s] Building seed filter... [0.002893s] Searching alignments... [0.576542s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018559s] Building query seed array... [1.44549s] Computing hash join... [0.313917s] Building seed filter... [0.002975s] Searching alignments... [0.475082s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018108s] Building query seed array... [1.48437s] Computing hash join... [0.30704s] Building seed filter... [0.002768s] Searching alignments... [0.538762s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014504s] Building query seed array... [1.19023s] Computing hash join... [0.310848s] Building seed filter... [0.002611s] Searching alignments... [0.468888s] Deallocating buffers... [4.5e-05s] Computing alignments... [154.573s] Deallocating reference... [4.5e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.020255s] Deallocating queries... [0.031646s] Loading query sequences... [1.9e-05s] Closing the input file... [3.2e-05s] Closing the output file... [0.000312s] Closing the database file... [5.7e-05s] Deallocating taxonomy... [3.1e-05s] Total time = 314.214s Reported 8277277 pairwise alignments, 8277277 HSPs. 8277277 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/304428_S1_L002_R2_001.fastp-trim.201912184416.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/304428_S1_L002_R2_001.fastp-trim.201912184416.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000323s] #Target sequences to report alignments for: 1 Opening the input file... [0.005788s] Opening the output file... [0.000428s] Loading query sequences... [69.3088s] Masking queries... [67.4727s] Building query seed set... [0.271698s] Algorithm: Double-indexed Building query histograms... [2.14707s] Allocating buffers... [0.001063s] Loading reference sequences... [0.022139s] Masking reference... [0.033914s] Initializing temporary storage... [0.003207s] Building reference histograms... [0.007577s] Allocating buffers... [0.000162s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.006935s] Building query seed array... [1.36299s] Computing hash join... [0.360269s] Building seed filter... [0.003021s] Searching alignments... [1.42338s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.014044s] Building query seed array... [1.64358s] Computing hash join... [0.369412s] Building seed filter... [0.003441s] Searching alignments... [0.87238s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017693s] Building query seed array... [1.66852s] Computing hash join... [0.368006s] Building seed filter... [0.002939s] Searching alignments... [0.733805s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014471s] Building query seed array... [1.32705s] Computing hash join... [0.394761s] Building seed filter... [0.002892s] Searching alignments... [0.702564s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014572s] Building query seed array... [1.18001s] Computing hash join... [0.310603s] Building seed filter... [0.002796s] Searching alignments... [0.558849s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015678s] Building query seed array... [1.46232s] Computing hash join... [0.313674s] Building seed filter... [0.003125s] Searching alignments... [0.535571s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017902s] Building query seed array... [1.50558s] Computing hash join... [0.319286s] Building seed filter... [0.003041s] Searching alignments... [0.570014s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014256s] Building query seed array... [1.21381s] Computing hash join... [0.31579s] Building seed filter... [0.00284s] Searching alignments... [0.510007s] Deallocating buffers... [4.7e-05s] Computing alignments... [153.115s] Deallocating reference... [3.2e-05s] Loading reference sequences... [6.2e-05s] Deallocating buffers... [0.018286s] Deallocating queries... [0.03226s] Loading query sequences... [2.1e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.00078s] Closing the database file... [2.1e-05s] Deallocating taxonomy... [1e-05s] Total time = 312.824s Reported 8589736 pairwise alignments, 8589736 HSPs. 8589736 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329774_S1_L001_R1_001.fastp-trim.201912184855.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329774_S1_L001_R1_001.fastp-trim.201912184855.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.00513s] Opening the output file... [0.001172s] Loading query sequences... [57.0968s] Masking queries... [57.9812s] Building query seed set... [0.213934s] Algorithm: Double-indexed Building query histograms... [1.63149s] Allocating buffers... [0.001056s] Loading reference sequences... [0.022702s] Masking reference... [0.032698s] Initializing temporary storage... [0.004723s] Building reference histograms... [0.008184s] Allocating buffers... [0.000143s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.008202s] Building query seed array... [1.06604s] Computing hash join... [0.285333s] Building seed filter... [0.003416s] Searching alignments... [0.843208s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.020033s] Building query seed array... [1.28453s] Computing hash join... [0.283208s] Building seed filter... [0.003176s] Searching alignments... [0.493272s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017155s] Building query seed array... [1.3216s] Computing hash join... [0.282679s] Building seed filter... [0.004064s] Searching alignments... [0.465542s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013967s] Building query seed array... [1.04059s] Computing hash join... [0.280204s] Building seed filter... [0.004251s] Searching alignments... [0.442577s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.012901s] Building query seed array... [0.929726s] Computing hash join... [0.236287s] Building seed filter... [0.003129s] Searching alignments... [0.357957s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016661s] Building query seed array... [1.15264s] Computing hash join... [0.238174s] Building seed filter... [0.003416s] Searching alignments... [0.304067s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017035s] Building query seed array... [1.16683s] Computing hash join... [0.238148s] Building seed filter... [0.002919s] Searching alignments... [0.330194s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014496s] Building query seed array... [0.938254s] Computing hash join... [0.237804s] Building seed filter... [0.002854s] Searching alignments... [0.302043s] Deallocating buffers... [4.5e-05s] Computing alignments... [124.835s] Deallocating reference... [5.4e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.017044s] Deallocating queries... [0.027875s] Loading query sequences... [2.1e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.000328s] Closing the database file... [2e-05s] Deallocating taxonomy... [1e-05s] Total time = 256.735s Reported 5374467 pairwise alignments, 5374467 HSPs. 5374467 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329774_S1_L001_R2_001.fastp-trim.201912184855.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329774_S1_L001_R2_001.fastp-trim.201912184855.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000305s] #Target sequences to report alignments for: 1 Opening the input file... [0.004948s] Opening the output file... [0.00038s] Loading query sequences... [56.7819s] Masking queries... [54.7142s] Building query seed set... [0.215095s] Algorithm: Double-indexed Building query histograms... [1.70882s] Allocating buffers... [0.001033s] Loading reference sequences... [0.023984s] Masking reference... [0.034161s] Initializing temporary storage... [0.002988s] Building reference histograms... [0.011147s] Allocating buffers... [0.000447s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.018978s] Building query seed array... [1.08371s] Computing hash join... [0.308649s] Building seed filter... [0.004416s] Searching alignments... [0.881153s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017332s] Building query seed array... [1.29852s] Computing hash join... [0.297384s] Building seed filter... [0.003174s] Searching alignments... [0.539284s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019076s] Building query seed array... [1.32714s] Computing hash join... [0.293899s] Building seed filter... [0.003365s] Searching alignments... [0.450175s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014484s] Building query seed array... [1.07552s] Computing hash join... [0.29129s] Building seed filter... [0.003271s] Searching alignments... [0.441128s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015426s] Building query seed array... [0.946065s] Computing hash join... [0.252707s] Building seed filter... [0.003057s] Searching alignments... [0.384978s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017374s] Building query seed array... [1.18231s] Computing hash join... [0.257044s] Building seed filter... [0.003165s] Searching alignments... [0.350169s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.020524s] Building query seed array... [1.20972s] Computing hash join... [0.246585s] Building seed filter... [0.003292s] Searching alignments... [0.410982s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.016042s] Building query seed array... [0.960823s] Computing hash join... [0.247812s] Building seed filter... [0.003754s] Searching alignments... [0.329863s] Deallocating buffers... [4.6e-05s] Computing alignments... [120.761s] Deallocating reference... [4.6e-05s] Loading reference sequences... [7.9e-05s] Deallocating buffers... [0.016716s] Deallocating queries... [0.026345s] Loading query sequences... [1.9e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.001078s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 249.729s Reported 5656831 pairwise alignments, 5656831 HSPs. 5656831 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329774_S1_L002_R1_001.fastp-trim.201912185239.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329774_S1_L002_R1_001.fastp-trim.201912185239.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.7e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.065028s] Opening the output file... [0.000465s] Loading query sequences... [51.8151s] Masking queries... [50.1577s] Building query seed set... [0.196015s] Algorithm: Double-indexed Building query histograms... [1.4484s] Allocating buffers... [0.00105s] Loading reference sequences... [0.021564s] Masking reference... [0.032499s] Initializing temporary storage... [0.003091s] Building reference histograms... [0.012126s] Allocating buffers... [0.000135s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.015541s] Building query seed array... [0.940033s] Computing hash join... [0.245874s] Building seed filter... [0.003106s] Searching alignments... [0.715925s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018214s] Building query seed array... [1.18518s] Computing hash join... [0.28715s] Building seed filter... [0.004181s] Searching alignments... [0.424763s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016996s] Building query seed array... [1.15093s] Computing hash join... [0.260521s] Building seed filter... [0.003129s] Searching alignments... [0.400671s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013509s] Building query seed array... [0.913739s] Computing hash join... [0.2485s] Building seed filter... [0.003287s] Searching alignments... [0.401552s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014589s] Building query seed array... [0.82076s] Computing hash join... [0.213113s] Building seed filter... [0.003247s] Searching alignments... [0.305761s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015859s] Building query seed array... [1.01354s] Computing hash join... [0.221179s] Building seed filter... [0.003716s] Searching alignments... [0.266618s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016668s] Building query seed array... [1.02789s] Computing hash join... [0.212841s] Building seed filter... [0.003174s] Searching alignments... [0.285287s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014463s] Building query seed array... [0.877671s] Computing hash join... [0.21135s] Building seed filter... [0.003744s] Searching alignments... [0.25874s] Deallocating buffers... [6.5e-05s] Computing alignments... [106.429s] Deallocating reference... [5e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.015292s] Deallocating queries... [0.024287s] Loading query sequences... [2.1e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.000447s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 223.438s Reported 4719822 pairwise alignments, 4719822 HSPs. 4719822 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329774_S1_L002_R2_001.fastp-trim.201912185239.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329774_S1_L002_R2_001.fastp-trim.201912185239.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.00011s] #Target sequences to report alignments for: 1 Opening the input file... [0.006904s] Opening the output file... [0.001177s] Loading query sequences... [51.0118s] Masking queries... [49.8621s] Building query seed set... [0.210271s] Algorithm: Double-indexed Building query histograms... [1.466s] Allocating buffers... [0.001058s] Loading reference sequences... [0.035028s] Masking reference... [0.034678s] Initializing temporary storage... [0.002946s] Building reference histograms... [0.00882s] Allocating buffers... [0.000177s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.006489s] Building query seed array... [0.960739s] Computing hash join... [0.274329s] Building seed filter... [0.003292s] Searching alignments... [0.759457s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016607s] Building query seed array... [1.16219s] Computing hash join... [0.250383s] Building seed filter... [0.004604s] Searching alignments... [0.450701s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019069s] Building query seed array... [1.17779s] Computing hash join... [0.254347s] Building seed filter... [0.002922s] Searching alignments... [0.384353s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013089s] Building query seed array... [0.932314s] Computing hash join... [0.25834s] Building seed filter... [0.003254s] Searching alignments... [0.378522s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.012867s] Building query seed array... [0.832005s] Computing hash join... [0.221278s] Building seed filter... [0.003212s] Searching alignments... [0.326366s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018178s] Building query seed array... [1.02894s] Computing hash join... [0.219116s] Building seed filter... [0.003266s] Searching alignments... [0.260007s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018615s] Building query seed array... [1.05003s] Computing hash join... [0.212786s] Building seed filter... [0.002955s] Searching alignments... [0.310801s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.013767s] Building query seed array... [0.836283s] Computing hash join... [0.208344s] Building seed filter... [0.003024s] Searching alignments... [0.283383s] Deallocating buffers... [4.6e-05s] Computing alignments... [105.982s] Deallocating reference... [6.8e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.016373s] Deallocating queries... [0.025997s] Loading query sequences... [2e-05s] Closing the input file... [5.2e-05s] Closing the output file... [0.000333s] Closing the database file... [2e-05s] Deallocating taxonomy... [1e-05s] Total time = 222.01s Reported 4942942 pairwise alignments, 4942942 HSPs. 4942942 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329775_S2_L001_R1_001.fastp-trim.201912185554.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329775_S2_L001_R1_001.fastp-trim.201912185554.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000314s] #Target sequences to report alignments for: 1 Opening the input file... [0.006563s] Opening the output file... [0.001161s] Loading query sequences... [48.4477s] Masking queries... [77.0454s] Building query seed set... [0.224728s] Algorithm: Double-indexed Building query histograms... [1.34332s] Allocating buffers... [0.00104s] Loading reference sequences... [0.023667s] Masking reference... [0.031458s] Initializing temporary storage... [0.003641s] Building reference histograms... [0.008314s] Allocating buffers... [0.000384s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.007781s] Building query seed array... [0.866563s] Computing hash join... [0.23643s] Building seed filter... [0.002872s] Searching alignments... [0.74463s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018139s] Building query seed array... [1.03366s] Computing hash join... [0.229552s] Building seed filter... [0.003198s] Searching alignments... [0.430608s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.015679s] Building query seed array... [1.08s] Computing hash join... [0.224354s] Building seed filter... [0.003186s] Searching alignments... [0.406133s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014002s] Building query seed array... [0.844786s] Computing hash join... [0.224045s] Building seed filter... [0.00314s] Searching alignments... [0.376513s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014449s] Building query seed array... [0.79079s] Computing hash join... [0.188452s] Building seed filter... [0.00367s] Searching alignments... [0.328167s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.01797s] Building query seed array... [0.931939s] Computing hash join... [0.2038s] Building seed filter... [0.004458s] Searching alignments... [0.277214s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018373s] Building query seed array... [0.958555s] Computing hash join... [0.18694s] Building seed filter... [0.002729s] Searching alignments... [0.288961s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014545s] Building query seed array... [0.76543s] Computing hash join... [0.183523s] Building seed filter... [0.003638s] Searching alignments... [0.465371s] Deallocating buffers... [5e-05s] Computing alignments... [106.106s] Deallocating reference... [4.6e-05s] Loading reference sequences... [9.2e-05s] Deallocating buffers... [0.089951s] Deallocating queries... [0.034599s] Loading query sequences... [1.9e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.000266s] Closing the database file... [1.6e-05s] Deallocating taxonomy... [6e-06s] Total time = 245.949s Reported 4865095 pairwise alignments, 4865095 HSPs. 4865095 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329775_S2_L001_R2_001.fastp-trim.201912185554.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329775_S2_L001_R2_001.fastp-trim.201912185554.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000284s] #Target sequences to report alignments for: 1 Opening the input file... [0.053098s] Opening the output file... [0.001083s] Loading query sequences... [48.8105s] Masking queries... [46.4875s] Building query seed set... [0.208232s] Algorithm: Double-indexed Building query histograms... [1.37408s] Allocating buffers... [0.001044s] Loading reference sequences... [0.022936s] Masking reference... [0.031592s] Initializing temporary storage... [0.003232s] Building reference histograms... [0.013502s] Allocating buffers... [0.000455s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.011306s] Building query seed array... [0.88784s] Computing hash join... [0.250284s] Building seed filter... [0.004347s] Searching alignments... [0.778919s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018088s] Building query seed array... [1.05423s] Computing hash join... [0.232872s] Building seed filter... [0.004288s] Searching alignments... [0.445664s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016514s] Building query seed array... [1.08184s] Computing hash join... [0.233083s] Building seed filter... [0.005703s] Searching alignments... [0.390157s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014106s] Building query seed array... [0.869111s] Computing hash join... [0.232037s] Building seed filter... [0.005789s] Searching alignments... [0.392342s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013012s] Building query seed array... [0.780668s] Computing hash join... [0.194682s] Building seed filter... [0.004682s] Searching alignments... [0.335859s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017223s] Building query seed array... [0.951415s] Computing hash join... [0.200979s] Building seed filter... [0.004437s] Searching alignments... [0.265169s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018222s] Building query seed array... [0.967801s] Computing hash join... [0.196079s] Building seed filter... [0.004122s] Searching alignments... [0.799942s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.017239s] Building query seed array... [0.772576s] Computing hash join... [0.196008s] Building seed filter... [0.005581s] Searching alignments... [0.283817s] Deallocating buffers... [2.6e-05s] Computing alignments... [107.107s] Deallocating reference... [5.7e-05s] Loading reference sequences... [9.2e-05s] Deallocating buffers... [0.014802s] Deallocating queries... [0.026876s] Loading query sequences... [1.9e-05s] Closing the input file... [3.8e-05s] Closing the output file... [0.000277s] Closing the database file... [1.6e-05s] Deallocating taxonomy... [8e-06s] Total time = 217.278s Reported 5183925 pairwise alignments, 5183925 HSPs. 5183925 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329775_S2_L002_R1_001.fastp-trim.201912185856.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329775_S2_L002_R1_001.fastp-trim.201912185856.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000276s] #Target sequences to report alignments for: 1 Opening the input file... [0.05716s] Opening the output file... [0.027574s] Loading query sequences... [42.2423s] Masking queries... [42.7182s] Building query seed set... [0.190809s] Algorithm: Double-indexed Building query histograms... [1.28761s] Allocating buffers... [0.001002s] Loading reference sequences... [0.02515s] Masking reference... [0.032351s] Initializing temporary storage... [0.002513s] Building reference histograms... [0.009334s] Allocating buffers... [0.000427s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.014412s] Building query seed array... [0.77213s] Computing hash join... [0.203786s] Building seed filter... [0.002689s] Searching alignments... [0.650959s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017454s] Building query seed array... [0.911019s] Computing hash join... [0.199639s] Building seed filter... [0.003042s] Searching alignments... [0.363759s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016722s] Building query seed array... [0.934353s] Computing hash join... [0.194665s] Building seed filter... [0.004415s] Searching alignments... [0.349351s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.011635s] Building query seed array... [0.765293s] Computing hash join... [0.196679s] Building seed filter... [0.003043s] Searching alignments... [0.324625s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013527s] Building query seed array... [0.681881s] Computing hash join... [0.166683s] Building seed filter... [0.004464s] Searching alignments... [0.301312s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015936s] Building query seed array... [0.818543s] Computing hash join... [0.178415s] Building seed filter... [0.003223s] Searching alignments... [0.236525s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.015215s] Building query seed array... [0.848841s] Computing hash join... [0.158514s] Building seed filter... [0.004358s] Searching alignments... [0.248891s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015102s] Building query seed array... [0.681489s] Computing hash join... [0.166294s] Building seed filter... [0.002706s] Searching alignments... [0.229284s] Deallocating buffers... [4.8e-05s] Computing alignments... [93.6591s] Deallocating reference... [4.4e-05s] Loading reference sequences... [7.7e-05s] Deallocating buffers... [0.01216s] Deallocating queries... [0.021023s] Loading query sequences... [1.9e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.002526s] Closing the database file... [5.7e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 191.162s Reported 4256458 pairwise alignments, 4256458 HSPs. 4256458 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329775_S2_L002_R2_001.fastp-trim.201912185856.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329775_S2_L002_R2_001.fastp-trim.201912185856.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000257s] #Target sequences to report alignments for: 1 Opening the input file... [0.043492s] Opening the output file... [0.001127s] Loading query sequences... [42.5878s] Masking queries... [42.8644s] Building query seed set... [0.186955s] Algorithm: Double-indexed Building query histograms... [1.20294s] Allocating buffers... [0.001058s] Loading reference sequences... [0.02429s] Masking reference... [0.030005s] Initializing temporary storage... [0.002992s] Building reference histograms... [0.010896s] Allocating buffers... [0.000429s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.012351s] Building query seed array... [0.78324s] Computing hash join... [0.202219s] Building seed filter... [0.002793s] Searching alignments... [0.646115s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.015036s] Building query seed array... [0.92772s] Computing hash join... [0.198465s] Building seed filter... [0.003038s] Searching alignments... [0.376827s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017207s] Building query seed array... [0.960048s] Computing hash join... [0.194509s] Building seed filter... [0.003633s] Searching alignments... [0.329462s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014474s] Building query seed array... [0.816199s] Computing hash join... [0.207558s] Building seed filter... [0.002894s] Searching alignments... [0.327983s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013832s] Building query seed array... [0.680857s] Computing hash join... [0.170042s] Building seed filter... [0.003163s] Searching alignments... [0.259866s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015416s] Building query seed array... [0.829226s] Computing hash join... [0.168121s] Building seed filter... [0.002516s] Searching alignments... [0.219912s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017889s] Building query seed array... [0.853139s] Computing hash join... [0.168402s] Building seed filter... [0.002949s] Searching alignments... [0.660482s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014382s] Building query seed array... [0.681099s] Computing hash join... [0.165198s] Building seed filter... [0.002747s] Searching alignments... [0.237039s] Deallocating buffers... [3e-05s] Computing alignments... [95.0008s] Deallocating reference... [5.2e-05s] Loading reference sequences... [8.7e-05s] Deallocating buffers... [0.013138s] Deallocating queries... [0.022736s] Loading query sequences... [1.8e-05s] Closing the input file... [3.2e-05s] Closing the output file... [0.000319s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [7e-06s] Total time = 193.343s Reported 4514064 pairwise alignments, 4514064 HSPs. 4514064 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329776_S3_L001_R1_001.fastp-trim.201912180142.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329776_S3_L001_R1_001.fastp-trim.201912180142.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000137s] #Target sequences to report alignments for: 1 Opening the input file... [0.2812s] Opening the output file... [0.000483s] Loading query sequences... [57.7653s] Masking queries... [56.2427s] Building query seed set... [0.215949s] Algorithm: Double-indexed Building query histograms... [1.65083s] Allocating buffers... [0.000632s] Loading reference sequences... [0.013732s] Masking reference... [0.02945s] Initializing temporary storage... [0.002673s] Building reference histograms... [0.00749s] Allocating buffers... [0.000136s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009888s] Building query seed array... [1.07186s] Computing hash join... [0.269147s] Building seed filter... [0.003114s] Searching alignments... [0.616232s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.021693s] Building query seed array... [1.28147s] Computing hash join... [0.286135s] Building seed filter... [0.004426s] Searching alignments... [0.40223s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.015425s] Building query seed array... [1.32932s] Computing hash join... [0.286883s] Building seed filter... [0.002833s] Searching alignments... [0.339328s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014493s] Building query seed array... [1.05215s] Computing hash join... [0.288225s] Building seed filter... [0.0033s] Searching alignments... [0.332498s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.011792s] Building query seed array... [0.932505s] Computing hash join... [0.241607s] Building seed filter... [0.003163s] Searching alignments... [0.246317s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015017s] Building query seed array... [1.15139s] Computing hash join... [0.248081s] Building seed filter... [0.003177s] Searching alignments... [0.233188s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016582s] Building query seed array... [1.18236s] Computing hash join... [0.236711s] Building seed filter... [0.003747s] Searching alignments... [0.744552s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.01752s] Building query seed array... [0.936623s] Computing hash join... [0.241472s] Building seed filter... [0.004396s] Searching alignments... [0.915759s] Deallocating buffers... [4.6e-05s] Computing alignments... [123.06s] Deallocating reference... [6e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.018329s] Deallocating queries... [0.028841s] Loading query sequences... [1.7e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.001026s] Closing the database file... [5.6e-05s] Deallocating taxonomy... [3e-05s] Total time = 254.528s Reported 4743536 pairwise alignments, 4743536 HSPs. 4743536 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329776_S3_L001_R2_001.fastp-trim.201912180142.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329776_S3_L001_R2_001.fastp-trim.201912180142.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.00029s] #Target sequences to report alignments for: 1 Opening the input file... [0.059116s] Opening the output file... [0.001163s] Loading query sequences... [58.0251s] Masking queries... [94.5316s] Building query seed set... [0.222019s] Algorithm: Double-indexed Building query histograms... [1.68657s] Allocating buffers... [0.001052s] Loading reference sequences... [0.02162s] Masking reference... [0.032451s] Initializing temporary storage... [0.002754s] Building reference histograms... [0.008312s] Allocating buffers... [0.00026s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.014993s] Building query seed array... [1.12349s] Computing hash join... [0.280941s] Building seed filter... [0.002972s] Searching alignments... [0.66396s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017554s] Building query seed array... [1.36512s] Computing hash join... [0.290119s] Building seed filter... [0.004399s] Searching alignments... [0.603221s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018905s] Building query seed array... [1.35278s] Computing hash join... [0.287441s] Building seed filter... [0.004366s] Searching alignments... [0.354531s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014612s] Building query seed array... [1.07574s] Computing hash join... [0.296152s] Building seed filter... [0.003856s] Searching alignments... [1.47324s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014688s] Building query seed array... [0.95355s] Computing hash join... [0.246901s] Building seed filter... [0.003265s] Searching alignments... [1.61588s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017239s] Building query seed array... [1.1841s] Computing hash join... [0.244481s] Building seed filter... [0.002941s] Searching alignments... [0.292912s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017762s] Building query seed array... [1.20837s] Computing hash join... [0.249624s] Building seed filter... [0.003447s] Searching alignments... [0.283407s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014613s] Building query seed array... [0.957069s] Computing hash join... [0.256517s] Building seed filter... [0.002964s] Searching alignments... [1.00835s] Deallocating buffers... [4.8e-05s] Computing alignments... [127.586s] Deallocating reference... [5.3e-05s] Loading reference sequences... [8.7e-05s] Deallocating buffers... [0.016968s] Deallocating queries... [0.027158s] Loading query sequences... [2e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.000893s] Closing the database file... [5.7e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 300.24s Reported 5013310 pairwise alignments, 5013310 HSPs. 5013310 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329776_S3_L002_R1_001.fastp-trim.201912180540.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329776_S3_L002_R1_001.fastp-trim.201912180540.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000254s] #Target sequences to report alignments for: 1 Opening the input file... [0.128772s] Opening the output file... [0.000471s] Loading query sequences... [51.2881s] Masking queries... [76.0746s] Building query seed set... [0.20178s] Algorithm: Double-indexed Building query histograms... [1.54896s] Allocating buffers... [0.001066s] Loading reference sequences... [0.024076s] Masking reference... [0.031969s] Initializing temporary storage... [0.002948s] Building reference histograms... [0.008431s] Allocating buffers... [0.000137s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009519s] Building query seed array... [1.14726s] Computing hash join... [0.238461s] Building seed filter... [0.002898s] Searching alignments... [0.527022s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.01553s] Building query seed array... [1.12748s] Computing hash join... [0.2511s] Building seed filter... [0.003824s] Searching alignments... [0.885952s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.01736s] Building query seed array... [1.15637s] Computing hash join... [0.245026s] Building seed filter... [0.003119s] Searching alignments... [0.2881s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014517s] Building query seed array... [0.955483s] Computing hash join... [0.25075s] Building seed filter... [0.00389s] Searching alignments... [0.284626s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013967s] Building query seed array... [0.824512s] Computing hash join... [0.211769s] Building seed filter... [0.002742s] Searching alignments... [1.51713s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.02159s] Building query seed array... [1.02028s] Computing hash join... [0.210399s] Building seed filter... [0.002514s] Searching alignments... [0.387492s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017965s] Building query seed array... [1.042s] Computing hash join... [0.202104s] Building seed filter... [0.003088s] Searching alignments... [0.209869s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012766s] Building query seed array... [0.832537s] Computing hash join... [0.20894s] Building seed filter... [0.002895s] Searching alignments... [3.01665s] Deallocating buffers... [5e-05s] Computing alignments... [111.862s] Deallocating reference... [5.3e-05s] Loading reference sequences... [8.9e-05s] Deallocating buffers... [0.01543s] Deallocating queries... [0.140231s] Loading query sequences... [6.5e-05s] Closing the input file... [0.000117s] Closing the output file... [0.000376s] Closing the database file... [5.9e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 258.678s Reported 4141359 pairwise alignments, 4141359 HSPs. 4141359 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329776_S3_L002_R2_001.fastp-trim.201912180540.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329776_S3_L002_R2_001.fastp-trim.201912180540.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000121s] #Target sequences to report alignments for: 1 Opening the input file... [0.231157s] Opening the output file... [0.000456s] Loading query sequences... [51.7377s] Masking queries... [51.4323s] Building query seed set... [0.200373s] Algorithm: Double-indexed Building query histograms... [1.51331s] Allocating buffers... [0.001057s] Loading reference sequences... [0.023638s] Masking reference... [0.030318s] Initializing temporary storage... [0.00349s] Building reference histograms... [0.008045s] Allocating buffers... [0.000212s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.017961s] Building query seed array... [0.968615s] Computing hash join... [0.242114s] Building seed filter... [0.002856s] Searching alignments... [0.557977s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017688s] Building query seed array... [1.15166s] Computing hash join... [0.247331s] Building seed filter... [0.003368s] Searching alignments... [0.757123s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.02037s] Building query seed array... [1.1849s] Computing hash join... [0.25442s] Building seed filter... [0.00322s] Searching alignments... [0.301359s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013986s] Building query seed array... [0.951442s] Computing hash join... [0.258582s] Building seed filter... [0.003732s] Searching alignments... [0.710834s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015922s] Building query seed array... [0.874648s] Computing hash join... [0.217157s] Building seed filter... [0.002815s] Searching alignments... [0.232065s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016003s] Building query seed array... [1.05494s] Computing hash join... [0.221728s] Building seed filter... [0.002744s] Searching alignments... [0.254686s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018663s] Building query seed array... [1.05895s] Computing hash join... [0.211969s] Building seed filter... [0.003101s] Searching alignments... [0.241011s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015331s] Building query seed array... [0.84251s] Computing hash join... [0.214425s] Building seed filter... [0.004541s] Searching alignments... [1.23919s] Deallocating buffers... [5e-05s] Computing alignments... [111.444s] Deallocating reference... [5.7e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.015456s] Deallocating queries... [0.024727s] Loading query sequences... [2e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.004313s] Closing the database file... [2.5e-05s] Deallocating taxonomy... [8e-06s] Total time = 231.25s Reported 4376198 pairwise alignments, 4376198 HSPs. 4376198 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329777_S4_L001_R1_001.fastp-trim.201912180900.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329777_S4_L001_R1_001.fastp-trim.201912180900.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.409025s] Opening the output file... [0.000469s] Loading query sequences... [55.9013s] Masking queries... [87.9719s] Building query seed set... [0.296949s] Algorithm: Double-indexed Building query histograms... [1.58952s] Allocating buffers... [0.001056s] Loading reference sequences... [0.014524s] Masking reference... [0.036723s] Initializing temporary storage... [0.002423s] Building reference histograms... [0.01041s] Allocating buffers... [0.000132s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.011692s] Building query seed array... [1.00985s] Computing hash join... [0.25797s] Building seed filter... [0.002008s] Searching alignments... [0.667763s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.023405s] Building query seed array... [1.20307s] Computing hash join... [0.268241s] Building seed filter... [0.003478s] Searching alignments... [6.30347s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.021864s] Building query seed array... [1.24502s] Computing hash join... [0.250548s] Building seed filter... [0.003085s] Searching alignments... [5.91714s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014937s] Building query seed array... [0.984367s] Computing hash join... [0.252354s] Building seed filter... [0.002237s] Searching alignments... [5.05481s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014692s] Building query seed array... [0.895473s] Computing hash join... [0.220781s] Building seed filter... [0.00243s] Searching alignments... [2.69293s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.01876s] Building query seed array... [1.09059s] Computing hash join... [0.223234s] Building seed filter... [0.003459s] Searching alignments... [1.22084s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018196s] Building query seed array... [1.10364s] Computing hash join... [0.204441s] Building seed filter... [0.002298s] Searching alignments... [0.247288s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012492s] Building query seed array... [0.890116s] Computing hash join... [0.22354s] Building seed filter... [0.00232s] Searching alignments... [0.285756s] Deallocating buffers... [5.1e-05s] Computing alignments... [118.794s] Deallocating reference... [5.9e-05s] Loading reference sequences... [8.7e-05s] Deallocating buffers... [0.017508s] Deallocating queries... [0.027758s] Loading query sequences... [2.9e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000243s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [7e-06s] Total time = 298.109s Reported 5828937 pairwise alignments, 5828937 HSPs. 5828937 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329777_S4_L001_R2_001.fastp-trim.201912180900.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329777_S4_L001_R2_001.fastp-trim.201912180900.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000236s] #Target sequences to report alignments for: 1 Opening the input file... [0.34007s] Opening the output file... [0.000503s] Loading query sequences... [57.222s] Masking queries... [56.484s] Building query seed set... [0.254193s] Algorithm: Double-indexed Building query histograms... [1.64031s] Allocating buffers... [0.00105s] Loading reference sequences... [0.023488s] Masking reference... [0.029487s] Initializing temporary storage... [0.004231s] Building reference histograms... [0.007936s] Allocating buffers... [0.000134s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.010561s] Building query seed array... [1.04948s] Computing hash join... [0.26846s] Building seed filter... [0.003535s] Searching alignments... [0.749896s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016355s] Building query seed array... [1.30444s] Computing hash join... [0.288493s] Building seed filter... [0.00343s] Searching alignments... [0.587888s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.015661s] Building query seed array... [1.29678s] Computing hash join... [0.280735s] Building seed filter... [0.003081s] Searching alignments... [0.785931s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014698s] Building query seed array... [1.03601s] Computing hash join... [0.283811s] Building seed filter... [0.002787s] Searching alignments... [3.66062s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014654s] Building query seed array... [0.961577s] Computing hash join... [0.232512s] Building seed filter... [0.00242s] Searching alignments... [3.69452s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.020004s] Building query seed array... [1.13588s] Computing hash join... [0.240656s] Building seed filter... [0.002403s] Searching alignments... [0.360728s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.01479s] Building query seed array... [1.17015s] Computing hash join... [0.225593s] Building seed filter... [0.002728s] Searching alignments... [0.304026s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.013386s] Building query seed array... [0.960359s] Computing hash join... [0.232588s] Building seed filter... [0.00252s] Searching alignments... [2.30024s] Deallocating buffers... [4.9e-05s] Computing alignments... [121.785s] Deallocating reference... [5.4e-05s] Loading reference sequences... [8.9e-05s] Deallocating buffers... [0.016957s] Deallocating queries... [0.02612s] Loading query sequences... [2e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.000364s] Closing the database file... [5.6e-05s] Deallocating taxonomy... [3.1e-05s] Total time = 261.572s Reported 6362031 pairwise alignments, 6362031 HSPs. 6362031 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329777_S4_L002_R1_001.fastp-trim.201912181245.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329777_S4_L002_R1_001.fastp-trim.201912181245.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000119s] #Target sequences to report alignments for: 1 Opening the input file... [0.142508s] Opening the output file... [0.000799s] Loading query sequences... [50.4181s] Masking queries... [48.7677s] Building query seed set... [0.238348s] Algorithm: Double-indexed Building query histograms... [1.38916s] Allocating buffers... [0.001054s] Loading reference sequences... [0.022279s] Masking reference... [0.03429s] Initializing temporary storage... [0.004618s] Building reference histograms... [0.009886s] Allocating buffers... [0.000393s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.013009s] Building query seed array... [0.953002s] Computing hash join... [0.221287s] Building seed filter... [0.002872s] Searching alignments... [0.56935s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017121s] Building query seed array... [1.07755s] Computing hash join... [0.237203s] Building seed filter... [0.003614s] Searching alignments... [0.515643s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017823s] Building query seed array... [1.09448s] Computing hash join... [0.225811s] Building seed filter... [0.003671s] Searching alignments... [0.304653s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.011547s] Building query seed array... [0.878186s] Computing hash join... [0.236111s] Building seed filter... [0.003196s] Searching alignments... [0.446327s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014237s] Building query seed array... [0.789733s] Computing hash join... [0.183493s] Building seed filter... [0.002608s] Searching alignments... [0.23367s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017185s] Building query seed array... [0.988205s] Computing hash join... [0.20026s] Building seed filter... [0.004564s] Searching alignments... [0.376192s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016401s] Building query seed array... [0.979087s] Computing hash join... [0.186712s] Building seed filter... [0.004496s] Searching alignments... [0.217024s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014127s] Building query seed array... [0.800983s] Computing hash join... [0.206154s] Building seed filter... [0.003013s] Searching alignments... [1.30663s] Deallocating buffers... [4.8e-05s] Computing alignments... [111.807s] Deallocating reference... [4.3e-05s] Loading reference sequences... [8.4e-05s] Deallocating buffers... [0.014753s] Deallocating queries... [0.027749s] Loading query sequences... [1.9e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.000258s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [9e-06s] Total time = 226.425s Reported 5182378 pairwise alignments, 5182378 HSPs. 5182378 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329777_S4_L002_R2_001.fastp-trim.201912181245.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/329777_S4_L002_R2_001.fastp-trim.201912181245.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000118s] #Target sequences to report alignments for: 1 Opening the input file... [0.442815s] Opening the output file... [0.000481s] Loading query sequences... [51.0444s] Masking queries... [55.4388s] Building query seed set... [0.26866s] Algorithm: Double-indexed Building query histograms... [1.45669s] Allocating buffers... [0.001007s] Loading reference sequences... [0.020977s] Masking reference... [0.029923s] Initializing temporary storage... [0.004409s] Building reference histograms... [0.01446s] Allocating buffers... [0.000433s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.024461s] Building query seed array... [0.932528s] Computing hash join... [0.261441s] Building seed filter... [0.00272s] Searching alignments... [0.635966s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017853s] Building query seed array... [1.1172s] Computing hash join... [0.25591s] Building seed filter... [0.003767s] Searching alignments... [0.515187s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.01816s] Building query seed array... [1.16618s] Computing hash join... [0.252838s] Building seed filter... [0.003686s] Searching alignments... [4.61827s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.018254s] Building query seed array... [0.927168s] Computing hash join... [0.249507s] Building seed filter... [0.003401s] Searching alignments... [6.03739s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.016215s] Building query seed array... [0.812848s] Computing hash join... [0.202941s] Building seed filter... [0.00233s] Searching alignments... [5.62628s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.02182s] Building query seed array... [1.02098s] Computing hash join... [0.2012s] Building seed filter... [0.003516s] Searching alignments... [0.357441s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.01441s] Building query seed array... [1.03211s] Computing hash join... [0.212468s] Building seed filter... [0.003491s] Searching alignments... [0.264801s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.013794s] Building query seed array... [0.839799s] Computing hash join... [0.203591s] Building seed filter... [0.004755s] Searching alignments... [2.49994s] Deallocating buffers... [4.4e-05s] Computing alignments... [120.488s] Deallocating reference... [5.5e-05s] Loading reference sequences... [8.7e-05s] Deallocating buffers... [0.015742s] Deallocating queries... [0.022777s] Loading query sequences... [1.8e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000882s] Closing the database file... [1.6e-05s] Deallocating taxonomy... [8e-06s] Total time = 259.846s Reported 5611446 pairwise alignments, 5611446 HSPs. 5611446 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/334_R1_001.fastp-trim.202003181149.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/334_R1_001.fastp-trim.202003181149.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000307s] #Target sequences to report alignments for: 1 Opening the input file... [0.287137s] Opening the output file... [0.000476s] Loading query sequences... [67.9389s] Masking queries... [90.1328s] Building query seed set... [0.2535s] Algorithm: Double-indexed Building query histograms... [2.36767s] Allocating buffers... [0.001069s] Loading reference sequences... [0.02308s] Masking reference... [0.031048s] Initializing temporary storage... [0.003468s] Building reference histograms... [0.007786s] Allocating buffers... [0.000139s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.007327s] Building query seed array... [1.38215s] Computing hash join... [0.343165s] Building seed filter... [0.004617s] Searching alignments... [0.616437s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017061s] Building query seed array... [1.65686s] Computing hash join... [0.356334s] Building seed filter... [0.003884s] Searching alignments... [1.25994s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016477s] Building query seed array... [1.69905s] Computing hash join... [0.346674s] Building seed filter... [0.004316s] Searching alignments... [0.93363s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.016023s] Building query seed array... [1.39085s] Computing hash join... [0.358641s] Building seed filter... [0.004541s] Searching alignments... [0.970565s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014834s] Building query seed array... [1.25048s] Computing hash join... [0.303054s] Building seed filter... [0.002915s] Searching alignments... [1.81408s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.021648s] Building query seed array... [1.56308s] Computing hash join... [0.309875s] Building seed filter... [0.004509s] Searching alignments... [0.338776s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017115s] Building query seed array... [1.57317s] Computing hash join... [0.284427s] Building seed filter... [0.003983s] Searching alignments... [0.274268s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014282s] Building query seed array... [1.29045s] Computing hash join... [0.321226s] Building seed filter... [0.004283s] Searching alignments... [1.04781s] Deallocating buffers... [5.6e-05s] Computing alignments... [130.015s] Deallocating reference... [6.9e-05s] Loading reference sequences... [8.7e-05s] Deallocating buffers... [0.023291s] Deallocating queries... [0.031016s] Loading query sequences... [2e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.000882s] Closing the database file... [1.6e-05s] Deallocating taxonomy... [8e-06s] Total time = 313.159s Reported 5248672 pairwise alignments, 5248672 HSPs. 5248672 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/334_R2_001.fastp-trim.202003181149.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/334_R2_001.fastp-trim.202003181149.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000236s] #Target sequences to report alignments for: 1 Opening the input file... [0.350647s] Opening the output file... [0.000477s] Loading query sequences... [66.1592s] Masking queries... [62.8383s] Building query seed set... [0.28911s] Algorithm: Double-indexed Building query histograms... [2.20694s] Allocating buffers... [0.00105s] Loading reference sequences... [0.022692s] Masking reference... [0.029428s] Initializing temporary storage... [0.216492s] Building reference histograms... [0.015646s] Allocating buffers... [0.000441s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.017833s] Building query seed array... [1.3902s] Computing hash join... [0.329844s] Building seed filter... [0.003479s] Searching alignments... [0.600557s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.015478s] Building query seed array... [1.65733s] Computing hash join... [0.362409s] Building seed filter... [0.002936s] Searching alignments... [4.80632s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017644s] Building query seed array... [1.71782s] Computing hash join... [0.354799s] Building seed filter... [0.002794s] Searching alignments... [3.69443s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.016586s] Building query seed array... [1.40403s] Computing hash join... [0.375454s] Building seed filter... [0.003375s] Searching alignments... [5.69673s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014848s] Building query seed array... [1.25862s] Computing hash join... [0.293149s] Building seed filter... [0.003337s] Searching alignments... [2.98835s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018699s] Building query seed array... [1.55102s] Computing hash join... [0.314358s] Building seed filter... [0.003452s] Searching alignments... [1.13228s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016415s] Building query seed array... [1.57674s] Computing hash join... [0.286258s] Building seed filter... [0.002513s] Searching alignments... [0.284314s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.013081s] Building query seed array... [1.24124s] Computing hash join... [0.351211s] Building seed filter... [0.003198s] Searching alignments... [1.02441s] Deallocating buffers... [4.6e-05s] Computing alignments... [132.94s] Deallocating reference... [5.4e-05s] Loading reference sequences... [8.9e-05s] Deallocating buffers... [0.02297s] Deallocating queries... [0.028548s] Loading query sequences... [1.6e-05s] Closing the input file... [3.1e-05s] Closing the output file... [0.000376s] Closing the database file... [5.7e-05s] Deallocating taxonomy... [3e-05s] Total time = 300.182s Reported 5224322 pairwise alignments, 5224322 HSPs. 5224322 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/349_R1_001.fastp-trim.202003181609.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/349_R1_001.fastp-trim.202003181609.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000242s] #Target sequences to report alignments for: 1 Opening the input file... [0.590297s] Opening the output file... [0.000455s] Loading query sequences... [72.4055s] Masking queries... [124.791s] Building query seed set... [0.452143s] Algorithm: Double-indexed Building query histograms... [1.88345s] Allocating buffers... [0.001204s] Loading reference sequences... [0.020035s] Masking reference... [0.033327s] Initializing temporary storage... [0.002654s] Building reference histograms... [0.00816s] Allocating buffers... [0.000132s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.007249s] Building query seed array... [1.03067s] Computing hash join... [0.241628s] Building seed filter... [0.002806s] Searching alignments... [1.30065s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016621s] Building query seed array... [1.18811s] Computing hash join... [0.227707s] Building seed filter... [0.003646s] Searching alignments... [1.10059s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018036s] Building query seed array... [1.20956s] Computing hash join... [0.217748s] Building seed filter... [0.004426s] Searching alignments... [4.39273s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.016916s] Building query seed array... [1.00002s] Computing hash join... [0.202809s] Building seed filter... [0.003631s] Searching alignments... [4.96642s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014711s] Building query seed array... [0.889343s] Computing hash join... [0.17396s] Building seed filter... [0.004661s] Searching alignments... [10.7096s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.022607s] Building query seed array... [1.06433s] Computing hash join... [0.169188s] Building seed filter... [0.003256s] Searching alignments... [2.3688s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.019283s] Building query seed array... [1.05293s] Computing hash join... [0.172284s] Building seed filter... [0.002541s] Searching alignments... [4.55004s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014918s] Building query seed array... [0.89072s] Computing hash join... [0.177028s] Building seed filter... [0.00393s] Searching alignments... [0.722963s] Deallocating buffers... [4.5e-05s] Computing alignments... [151.603s] Deallocating reference... [5.2e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.013086s] Deallocating queries... [0.033326s] Loading query sequences... [2.1e-05s] Closing the input file... [3.8e-05s] Closing the output file... [0.000358s] Closing the database file... [2e-05s] Deallocating taxonomy... [9e-06s] Total time = 392.324s Reported 1484352 pairwise alignments, 1484352 HSPs. 1484352 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/349_R2_001.fastp-trim.202003181609.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/349_R2_001.fastp-trim.202003181609.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000149s] #Target sequences to report alignments for: 1 Opening the input file... [0.645325s] Opening the output file... [0.000487s] Loading query sequences... [72.6161s] Masking queries... [117.502s] Building query seed set... [0.294741s] Algorithm: Double-indexed Building query histograms... [1.83972s] Allocating buffers... [0.001065s] Loading reference sequences... [0.021557s] Masking reference... [0.032477s] Initializing temporary storage... [0.004086s] Building reference histograms... [0.008275s] Allocating buffers... [0.000141s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.006897s] Building query seed array... [1.02726s] Computing hash join... [0.216297s] Building seed filter... [0.003088s] Searching alignments... [1.28439s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.019868s] Building query seed array... [1.17764s] Computing hash join... [0.219801s] Building seed filter... [0.00264s] Searching alignments... [1.78229s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019491s] Building query seed array... [1.19809s] Computing hash join... [0.221411s] Building seed filter... [0.003112s] Searching alignments... [3.57228s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.018538s] Building query seed array... [1.00119s] Computing hash join... [0.213936s] Building seed filter... [0.004147s] Searching alignments... [5.42584s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.020151s] Building query seed array... [0.891477s] Computing hash join... [0.177087s] Building seed filter... [0.00326s] Searching alignments... [5.5973s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.020165s] Building query seed array... [1.06817s] Computing hash join... [0.175922s] Building seed filter... [0.002631s] Searching alignments... [3.4013s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.022433s] Building query seed array... [1.05793s] Computing hash join... [0.179599s] Building seed filter... [0.003101s] Searching alignments... [2.39905s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015832s] Building query seed array... [0.893649s] Computing hash join... [0.178056s] Building seed filter... [0.003477s] Searching alignments... [3.6749s] Deallocating buffers... [5e-05s] Computing alignments... [154.616s] Deallocating reference... [4.9e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.013294s] Deallocating queries... [0.559517s] Loading query sequences... [6.9e-05s] Closing the input file... [0.00012s] Closing the output file... [0.00103s] Closing the database file... [6.2e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 385.612s Reported 1473080 pairwise alignments, 1473080 HSPs. 1473080 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/359_R1_001.fastp-trim.202003182247.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/359_R1_001.fastp-trim.202003182247.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000258s] #Target sequences to report alignments for: 1 Opening the input file... [2.86284s] Opening the output file... [0.000484s] Loading query sequences... [70.8072s] Masking queries... [96.712s] Building query seed set... [0.254803s] Algorithm: Double-indexed Building query histograms... [2.71957s] Allocating buffers... [0.001079s] Loading reference sequences... [0.021383s] Masking reference... [0.031461s] Initializing temporary storage... [0.003173s] Building reference histograms... [0.008656s] Allocating buffers... [0.000385s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.004683s] Building query seed array... [1.51993s] Computing hash join... [0.391343s] Building seed filter... [0.003302s] Searching alignments... [6.68045s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.020955s] Building query seed array... [1.87017s] Computing hash join... [0.414543s] Building seed filter... [0.003395s] Searching alignments... [9.42773s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016162s] Building query seed array... [1.87311s] Computing hash join... [0.409324s] Building seed filter... [0.003378s] Searching alignments... [3.71155s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.016408s] Building query seed array... [1.50414s] Computing hash join... [0.40313s] Building seed filter... [0.00278s] Searching alignments... [6.70484s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.018726s] Building query seed array... [1.34713s] Computing hash join... [0.351447s] Building seed filter... [0.002797s] Searching alignments... [2.53437s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018002s] Building query seed array... [1.67965s] Computing hash join... [0.377632s] Building seed filter... [0.003165s] Searching alignments... [4.44284s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.021843s] Building query seed array... [1.714s] Computing hash join... [0.352338s] Building seed filter... [0.004193s] Searching alignments... [4.66191s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014182s] Building query seed array... [1.39494s] Computing hash join... [0.370315s] Building seed filter... [0.003231s] Searching alignments... [3.75882s] Deallocating buffers... [5e-05s] Computing alignments... [122.157s] Deallocating reference... [3.7e-05s] Loading reference sequences... [7.6e-05s] Deallocating buffers... [0.021426s] Deallocating queries... [0.03105s] Loading query sequences... [2e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.000853s] Closing the database file... [1.8e-05s] Deallocating taxonomy... [8e-06s] Total time = 353.924s Reported 8009496 pairwise alignments, 8009496 HSPs. 8009496 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/359_R2_001.fastp-trim.202003182247.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/359_R2_001.fastp-trim.202003182247.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7.1e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.474342s] Opening the output file... [0.000471s] Loading query sequences... [76.3866s] Masking queries... [70.4907s] Building query seed set... [0.258874s] Algorithm: Double-indexed Building query histograms... [2.88241s] Allocating buffers... [0.001082s] Loading reference sequences... [0.023354s] Masking reference... [0.032824s] Initializing temporary storage... [0.004793s] Building reference histograms... [0.011801s] Allocating buffers... [0.000149s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.012988s] Building query seed array... [1.55168s] Computing hash join... [0.380527s] Building seed filter... [0.003198s] Searching alignments... [5.2082s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.0215s] Building query seed array... [1.86233s] Computing hash join... [0.436205s] Building seed filter... [0.003195s] Searching alignments... [7.19931s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.021132s] Building query seed array... [1.85711s] Computing hash join... [0.406189s] Building seed filter... [0.00298s] Searching alignments... [4.66308s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014757s] Building query seed array... [1.5064s] Computing hash join... [0.403015s] Building seed filter... [0.002956s] Searching alignments... [12.7384s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014864s] Building query seed array... [1.36336s] Computing hash join... [0.361583s] Building seed filter... [0.003469s] Searching alignments... [4.58965s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018048s] Building query seed array... [1.66475s] Computing hash join... [0.375768s] Building seed filter... [0.003297s] Searching alignments... [7.50178s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.01887s] Building query seed array... [1.69767s] Computing hash join... [0.351723s] Building seed filter... [0.003159s] Searching alignments... [4.83775s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.018366s] Building query seed array... [1.35736s] Computing hash join... [0.358546s] Building seed filter... [0.002772s] Searching alignments... [1.39635s] Deallocating buffers... [4.8e-05s] Computing alignments... [130.052s] Deallocating reference... [5.6e-05s] Loading reference sequences... [8.7e-05s] Deallocating buffers... [0.021303s] Deallocating queries... [0.031401s] Loading query sequences... [1.8e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000839s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [8e-06s] Total time = 345.138s Reported 8003699 pairwise alignments, 8003699 HSPs. 8003699 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380820_S1_L001_R1_001.fastp-trim.202004143431.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380820_S1_L001_R1_001.fastp-trim.202004143431.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000252s] #Target sequences to report alignments for: 1 Opening the input file... [0.331552s] Opening the output file... [0.000508s] Loading query sequences... [22.47s] Masking queries... [21.7599s] Building query seed set... [0.130879s] Algorithm: Double-indexed Building query histograms... [1.01629s] Allocating buffers... [0.001358s] Loading reference sequences... [0.0257s] Masking reference... [0.031119s] Initializing temporary storage... [0.004382s] Building reference histograms... [0.013365s] Allocating buffers... [0.000153s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.012456s] Building query seed array... [0.412541s] Computing hash join... [0.128611s] Building seed filter... [0.002405s] Searching alignments... [0.563512s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018122s] Building query seed array... [0.565274s] Computing hash join... [0.119824s] Building seed filter... [0.002841s] Searching alignments... [0.328352s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016572s] Building query seed array... [0.520435s] Computing hash join... [0.115691s] Building seed filter... [0.002923s] Searching alignments... [0.296385s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.01238s] Building query seed array... [0.458531s] Computing hash join... [0.119818s] Building seed filter... [0.004275s] Searching alignments... [0.294361s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014261s] Building query seed array... [0.377435s] Computing hash join... [0.099869s] Building seed filter... [0.003077s] Searching alignments... [1.28633s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.024533s] Building query seed array... [0.452141s] Computing hash join... [0.103531s] Building seed filter... [0.002951s] Searching alignments... [1.47043s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016385s] Building query seed array... [0.478948s] Computing hash join... [0.099233s] Building seed filter... [0.002901s] Searching alignments... [2.00377s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014892s] Building query seed array... [0.370064s] Computing hash join... [0.098145s] Building seed filter... [0.00263s] Searching alignments... [0.1953s] Deallocating buffers... [2.2e-05s] Computing alignments... [46.2192s] Deallocating reference... [5.3e-05s] Loading reference sequences... [8.3e-05s] Deallocating buffers... [0.006037s] Deallocating queries... [0.011744s] Loading query sequences... [2e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.000908s] Closing the database file... [2e-05s] Deallocating taxonomy... [1e-05s] Total time = 103.214s Reported 3265076 pairwise alignments, 3265076 HSPs. 3265076 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380820_S1_L001_R2_001.fastp-trim.202004143431.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380820_S1_L001_R2_001.fastp-trim.202004143431.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000237s] #Target sequences to report alignments for: 1 Opening the input file... [0.484608s] Opening the output file... [0.00048s] Loading query sequences... [21.2971s] Masking queries... [21.3415s] Building query seed set... [0.12531s] Algorithm: Double-indexed Building query histograms... [0.640001s] Allocating buffers... [0.000733s] Loading reference sequences... [0.01965s] Masking reference... [0.037535s] Initializing temporary storage... [0.005639s] Building reference histograms... [0.01423s] Allocating buffers... [0.000441s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.00794s] Building query seed array... [0.42425s] Computing hash join... [0.132095s] Building seed filter... [0.002667s] Searching alignments... [0.601066s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018842s] Building query seed array... [0.538818s] Computing hash join... [0.118179s] Building seed filter... [0.002781s] Searching alignments... [0.344502s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018297s] Building query seed array... [0.5202s] Computing hash join... [0.118163s] Building seed filter... [0.003042s] Searching alignments... [0.305366s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014076s] Building query seed array... [0.414759s] Computing hash join... [0.122089s] Building seed filter... [0.002886s] Searching alignments... [0.294085s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013988s] Building query seed array... [0.37288s] Computing hash join... [0.099619s] Building seed filter... [0.00237s] Searching alignments... [2.61145s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018287s] Building query seed array... [0.457643s] Computing hash join... [0.100459s] Building seed filter... [0.003178s] Searching alignments... [1.44627s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.01631s] Building query seed array... [0.465236s] Computing hash join... [0.09783s] Building seed filter... [0.003111s] Searching alignments... [0.244202s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014469s] Building query seed array... [0.372302s] Computing hash join... [0.101731s] Building seed filter... [0.003253s] Searching alignments... [0.216165s] Deallocating buffers... [4.8e-05s] Computing alignments... [31.9218s] Deallocating reference... [5.7e-05s] Loading reference sequences... [8.4e-05s] Deallocating buffers... [0.004851s] Deallocating queries... [0.010148s] Loading query sequences... [1.6e-05s] Closing the input file... [3.1e-05s] Closing the output file... [0.000919s] Closing the database file... [6.1e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 86.6495s Reported 3380803 pairwise alignments, 3380803 HSPs. 3380803 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380820_S1_L002_R1_001.fastp-trim.202004143700.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380820_S1_L002_R1_001.fastp-trim.202004143700.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000308s] #Target sequences to report alignments for: 1 Opening the input file... [0.428358s] Opening the output file... [0.000467s] Loading query sequences... [21.5279s] Masking queries... [21.6329s] Building query seed set... [0.138748s] Algorithm: Double-indexed Building query histograms... [0.656072s] Allocating buffers... [0.00103s] Loading reference sequences... [0.022273s] Masking reference... [0.034052s] Initializing temporary storage... [0.002092s] Building reference histograms... [0.008929s] Allocating buffers... [0.000135s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009027s] Building query seed array... [0.41337s] Computing hash join... [0.130091s] Building seed filter... [0.002674s] Searching alignments... [0.571237s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016782s] Building query seed array... [0.523091s] Computing hash join... [0.117105s] Building seed filter... [0.003364s] Searching alignments... [0.324612s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018161s] Building query seed array... [0.513324s] Computing hash join... [0.111498s] Building seed filter... [0.002695s] Searching alignments... [0.29808s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014745s] Building query seed array... [0.403805s] Computing hash join... [0.117154s] Building seed filter... [0.002278s] Searching alignments... [5.1399s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015799s] Building query seed array... [0.392056s] Computing hash join... [0.095859s] Building seed filter... [0.002896s] Searching alignments... [0.244621s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.01674s] Building query seed array... [0.471709s] Computing hash join... [0.105472s] Building seed filter... [0.004735s] Searching alignments... [0.203089s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017346s] Building query seed array... [0.456017s] Computing hash join... [0.095361s] Building seed filter... [0.002326s] Searching alignments... [5.25579s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.016031s] Building query seed array... [0.403869s] Computing hash join... [0.100768s] Building seed filter... [0.003046s] Searching alignments... [3.83922s] Deallocating buffers... [5e-05s] Computing alignments... [43.0024s] Deallocating reference... [5e-05s] Loading reference sequences... [8.1e-05s] Deallocating buffers... [0.0072s] Deallocating queries... [0.013186s] Loading query sequences... [2e-05s] Closing the input file... [3.8e-05s] Closing the output file... [0.001008s] Closing the database file... [7.3e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 108.036s Reported 3265668 pairwise alignments, 3265668 HSPs. 3265668 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380820_S1_L002_R2_001.fastp-trim.202004143700.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380820_S1_L002_R2_001.fastp-trim.202004143700.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000185s] #Target sequences to report alignments for: 1 Opening the input file... [0.141801s] Opening the output file... [0.000473s] Loading query sequences... [21.5814s] Masking queries... [21.789s] Building query seed set... [0.131637s] Algorithm: Double-indexed Building query histograms... [0.694135s] Allocating buffers... [0.001053s] Loading reference sequences... [0.021647s] Masking reference... [0.032772s] Initializing temporary storage... [0.003927s] Building reference histograms... [0.011299s] Allocating buffers... [0.000135s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.012581s] Building query seed array... [0.423434s] Computing hash join... [0.140258s] Building seed filter... [0.003159s] Searching alignments... [0.603919s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.0175s] Building query seed array... [0.505618s] Computing hash join... [0.116647s] Building seed filter... [0.00466s] Searching alignments... [0.344378s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018907s] Building query seed array... [0.520922s] Computing hash join... [0.121039s] Building seed filter... [0.002467s] Searching alignments... [5.95926s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.020116s] Building query seed array... [0.427258s] Computing hash join... [0.123724s] Building seed filter... [0.002553s] Searching alignments... [0.289424s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013574s] Building query seed array... [0.364785s] Computing hash join... [0.094589s] Building seed filter... [0.002749s] Searching alignments... [0.245728s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016152s] Building query seed array... [0.459346s] Computing hash join... [0.098276s] Building seed filter... [0.004374s] Searching alignments... [0.191867s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016319s] Building query seed array... [0.465433s] Computing hash join... [0.099689s] Building seed filter... [0.0025s] Searching alignments... [0.234279s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.01237s] Building query seed array... [0.372909s] Computing hash join... [0.13317s] Building seed filter... [0.073599s] Searching alignments... [6.36957s] Deallocating buffers... [4.5e-05s] Computing alignments... [56.1184s] Deallocating reference... [5.4e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.007872s] Deallocating queries... [0.014377s] Loading query sequences... [2.1e-05s] Closing the input file... [4e-05s] Closing the output file... [0.000806s] Closing the database file... [7.6e-05s] Deallocating taxonomy... [3.1e-05s] Total time = 119.594s Reported 3380381 pairwise alignments, 3380381 HSPs. 3380381 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380821_S2_L001_R1_001.fastp-trim.202004143925.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380821_S2_L001_R1_001.fastp-trim.202004143925.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.00027s] #Target sequences to report alignments for: 1 Opening the input file... [0.840433s] Opening the output file... [0.000467s] Loading query sequences... [20.3418s] Masking queries... [32.0974s] Building query seed set... [0.128534s] Algorithm: Double-indexed Building query histograms... [0.608832s] Allocating buffers... [0.00078s] Loading reference sequences... [0.020518s] Masking reference... [0.031515s] Initializing temporary storage... [0.002029s] Building reference histograms... [0.008238s] Allocating buffers... [0.000398s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009544s] Building query seed array... [0.390539s] Computing hash join... [0.13486s] Building seed filter... [0.002507s] Searching alignments... [0.499094s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016585s] Building query seed array... [0.477284s] Computing hash join... [0.113486s] Building seed filter... [0.002833s] Searching alignments... [0.29678s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.015815s] Building query seed array... [0.504781s] Computing hash join... [0.114018s] Building seed filter... [0.002507s] Searching alignments... [0.26949s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014046s] Building query seed array... [0.403982s] Computing hash join... [0.112051s] Building seed filter... [0.003147s] Searching alignments... [0.741362s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014532s] Building query seed array... [0.341085s] Computing hash join... [0.09016s] Building seed filter... [0.00283s] Searching alignments... [3.2649s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.021276s] Building query seed array... [0.446766s] Computing hash join... [0.096275s] Building seed filter... [0.002302s] Searching alignments... [0.17429s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.014639s] Building query seed array... [0.433963s] Computing hash join... [0.08925s] Building seed filter... [0.002644s] Searching alignments... [0.215694s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012462s] Building query seed array... [0.351413s] Computing hash join... [0.095941s] Building seed filter... [0.002913s] Searching alignments... [0.177092s] Deallocating buffers... [4.7e-05s] Computing alignments... [40.5465s] Deallocating reference... [5.3e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.006924s] Deallocating queries... [0.013418s] Loading query sequences... [2.3e-05s] Closing the input file... [4e-05s] Closing the output file... [0.755124s] Closing the database file... [8e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 105.457s Reported 3032814 pairwise alignments, 3032814 HSPs. 3032814 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380821_S2_L001_R2_001.fastp-trim.202004143925.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380821_S2_L001_R2_001.fastp-trim.202004143925.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000171s] #Target sequences to report alignments for: 1 Opening the input file... [1.02144s] Opening the output file... [0.000464s] Loading query sequences... [22.5773s] Masking queries... [19.8156s] Building query seed set... [0.125338s] Algorithm: Double-indexed Building query histograms... [0.632977s] Allocating buffers... [0.001053s] Loading reference sequences... [0.025312s] Masking reference... [0.03044s] Initializing temporary storage... [0.004269s] Building reference histograms... [0.010012s] Allocating buffers... [0.000291s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.008961s] Building query seed array... [0.410252s] Computing hash join... [0.13573s] Building seed filter... [0.002621s] Searching alignments... [0.606026s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.020307s] Building query seed array... [0.484609s] Computing hash join... [0.113503s] Building seed filter... [0.002578s] Searching alignments... [0.30657s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016894s] Building query seed array... [0.531736s] Computing hash join... [0.11989s] Building seed filter... [0.002544s] Searching alignments... [15.4058s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.020665s] Building query seed array... [0.417726s] Computing hash join... [0.112589s] Building seed filter... [0.002731s] Searching alignments... [0.302325s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015255s] Building query seed array... [0.349357s] Computing hash join... [0.091117s] Building seed filter... [0.002594s] Searching alignments... [0.216153s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018421s] Building query seed array... [0.439249s] Computing hash join... [0.096358s] Building seed filter... [0.002607s] Searching alignments... [0.175673s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.015121s] Building query seed array... [0.487062s] Computing hash join... [0.093386s] Building seed filter... [0.002756s] Searching alignments... [0.214074s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012228s] Building query seed array... [0.350286s] Computing hash join... [0.091847s] Building seed filter... [0.002478s] Searching alignments... [0.191909s] Deallocating buffers... [3.4e-05s] Computing alignments... [46.1329s] Deallocating reference... [5.6e-05s] Loading reference sequences... [0.000105s] Deallocating buffers... [0.008102s] Deallocating queries... [0.014334s] Loading query sequences... [2.2e-05s] Closing the input file... [4.3e-05s] Closing the output file... [0.001121s] Closing the database file... [6.1e-05s] Deallocating taxonomy... [3e-05s] Total time = 112.37s Reported 3152530 pairwise alignments, 3152530 HSPs. 3152530 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380821_S2_L002_R1_001.fastp-trim.202004144145.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380821_S2_L002_R1_001.fastp-trim.202004144145.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000297s] #Target sequences to report alignments for: 1 Opening the input file... [0.282406s] Opening the output file... [0.000502s] Loading query sequences... [19.8183s] Masking queries... [31.0045s] Building query seed set... [0.119535s] Algorithm: Double-indexed Building query histograms... [0.600262s] Allocating buffers... [0.000775s] Loading reference sequences... [0.019038s] Masking reference... [0.030281s] Initializing temporary storage... [0.004902s] Building reference histograms... [0.011594s] Allocating buffers... [0.00014s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.013579s] Building query seed array... [0.400721s] Computing hash join... [0.133975s] Building seed filter... [0.003758s] Searching alignments... [0.501681s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017874s] Building query seed array... [0.484975s] Computing hash join... [0.112295s] Building seed filter... [0.004682s] Searching alignments... [0.294188s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016721s] Building query seed array... [0.48832s] Computing hash join... [0.108511s] Building seed filter... [0.004284s] Searching alignments... [0.26445s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014909s] Building query seed array... [0.397839s] Computing hash join... [0.106911s] Building seed filter... [0.004124s] Searching alignments... [2.36151s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014839s] Building query seed array... [0.34582s] Computing hash join... [0.093235s] Building seed filter... [0.006273s] Searching alignments... [1.57354s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016547s] Building query seed array... [0.423162s] Computing hash join... [0.091418s] Building seed filter... [0.004178s] Searching alignments... [3.75803s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.019901s] Building query seed array... [0.43448s] Computing hash join... [0.094105s] Building seed filter... [0.003967s] Searching alignments... [0.216982s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014546s] Building query seed array... [0.3497s] Computing hash join... [0.094695s] Building seed filter... [0.006444s] Searching alignments... [0.631048s] Deallocating buffers... [4.6e-05s] Computing alignments... [41.483s] Deallocating reference... [6.3e-05s] Loading reference sequences... [7.2e-05s] Deallocating buffers... [0.006873s] Deallocating queries... [0.012764s] Loading query sequences... [2e-05s] Closing the input file... [4.5e-05s] Closing the output file... [0.000924s] Closing the database file... [1.9e-05s] Deallocating taxonomy... [8e-06s] Total time = 107.397s Reported 3024798 pairwise alignments, 3024798 HSPs. 3024798 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380821_S2_L002_R2_001.fastp-trim.202004144145.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380821_S2_L002_R2_001.fastp-trim.202004144145.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000236s] #Target sequences to report alignments for: 1 Opening the input file... [0.262254s] Opening the output file... [0.000459s] Loading query sequences... [20.6375s] Masking queries... [20.1273s] Building query seed set... [0.128491s] Algorithm: Double-indexed Building query histograms... [0.661398s] Allocating buffers... [0.001008s] Loading reference sequences... [0.025456s] Masking reference... [0.029434s] Initializing temporary storage... [0.002064s] Building reference histograms... [0.009923s] Allocating buffers... [0.000878s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.011725s] Building query seed array... [0.399486s] Computing hash join... [0.240181s] Building seed filter... [0.004678s] Searching alignments... [0.528747s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017077s] Building query seed array... [0.484729s] Computing hash join... [0.112382s] Building seed filter... [0.002527s] Searching alignments... [0.300917s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019585s] Building query seed array... [0.493465s] Computing hash join... [0.112249s] Building seed filter... [0.002558s] Searching alignments... [0.283004s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014416s] Building query seed array... [0.394589s] Computing hash join... [0.114266s] Building seed filter... [0.002901s] Searching alignments... [0.265308s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.01519s] Building query seed array... [0.389126s] Computing hash join... [0.093369s] Building seed filter... [0.00247s] Searching alignments... [0.215739s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.01744s] Building query seed array... [0.433512s] Computing hash join... [0.096631s] Building seed filter... [0.002656s] Searching alignments... [5.71802s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017775s] Building query seed array... [0.439918s] Computing hash join... [0.093544s] Building seed filter... [0.003175s] Searching alignments... [0.208132s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015368s] Building query seed array... [0.353392s] Computing hash join... [0.099591s] Building seed filter... [0.003031s] Searching alignments... [0.193902s] Deallocating buffers... [4.4e-05s] Computing alignments... [43.39s] Deallocating reference... [5.8e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.007077s] Deallocating queries... [0.013199s] Loading query sequences... [2.1e-05s] Closing the input file... [5.1e-05s] Closing the output file... [0.000911s] Closing the database file... [2.1e-05s] Deallocating taxonomy... [1e-05s] Total time = 97.5932s Reported 3144919 pairwise alignments, 3144919 HSPs. 3144919 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380822_S3_L001_R1_001.fastp-trim.202004144409.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380822_S3_L001_R1_001.fastp-trim.202004144409.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000291s] #Target sequences to report alignments for: 1 Opening the input file... [0.236109s] Opening the output file... [0.000477s] Loading query sequences... [21.6172s] Masking queries... [22.9856s] Building query seed set... [0.13317s] Algorithm: Double-indexed Building query histograms... [0.656954s] Allocating buffers... [0.00105s] Loading reference sequences... [0.024861s] Masking reference... [0.03652s] Initializing temporary storage... [0.002251s] Building reference histograms... [0.013452s] Allocating buffers... [0.000177s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.019207s] Building query seed array... [0.416271s] Computing hash join... [0.117111s] Building seed filter... [0.002427s] Searching alignments... [0.484632s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017727s] Building query seed array... [0.505063s] Computing hash join... [0.115219s] Building seed filter... [0.003372s] Searching alignments... [5.17058s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018937s] Building query seed array... [0.520918s] Computing hash join... [0.116801s] Building seed filter... [0.003384s] Searching alignments... [5.49463s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.016268s] Building query seed array... [0.413232s] Computing hash join... [0.11403s] Building seed filter... [0.002997s] Searching alignments... [6.735s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.016317s] Building query seed array... [0.359707s] Computing hash join... [0.091138s] Building seed filter... [0.002384s] Searching alignments... [0.200914s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015182s] Building query seed array... [0.444983s] Computing hash join... [0.094953s] Building seed filter... [0.003321s] Searching alignments... [0.184696s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.01685s] Building query seed array... [0.457876s] Computing hash join... [0.095431s] Building seed filter... [0.002665s] Searching alignments... [0.212528s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012529s] Building query seed array... [0.406703s] Computing hash join... [0.099037s] Building seed filter... [0.002387s] Searching alignments... [0.1679s] Deallocating buffers... [3.3e-05s] Computing alignments... [57.4583s] Deallocating reference... [5.4e-05s] Loading reference sequences... [8.7e-05s] Deallocating buffers... [0.007494s] Deallocating queries... [0.014945s] Loading query sequences... [2.2e-05s] Closing the input file... [4.7e-05s] Closing the output file... [0.000918s] Closing the database file... [2.1e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 126.467s Reported 3051316 pairwise alignments, 3051316 HSPs. 3051316 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380822_S3_L001_R2_001.fastp-trim.202004144409.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380822_S3_L001_R2_001.fastp-trim.202004144409.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000293s] #Target sequences to report alignments for: 1 Opening the input file... [1.17672s] Opening the output file... [0.000542s] Loading query sequences... [25.5024s] Masking queries... [23.294s] Building query seed set... [0.134156s] Algorithm: Double-indexed Building query histograms... [0.667987s] Allocating buffers... [0.001047s] Loading reference sequences... [0.025789s] Masking reference... [0.03037s] Initializing temporary storage... [0.004009s] Building reference histograms... [0.008243s] Allocating buffers... [0.000145s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.008486s] Building query seed array... [0.425726s] Computing hash join... [0.150957s] Building seed filter... [0.002694s] Searching alignments... [0.513249s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017641s] Building query seed array... [0.514624s] Computing hash join... [0.117539s] Building seed filter... [0.002686s] Searching alignments... [0.294496s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017482s] Building query seed array... [0.529602s] Computing hash join... [0.121785s] Building seed filter... [0.002668s] Searching alignments... [0.265838s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.010828s] Building query seed array... [0.419729s] Computing hash join... [0.118817s] Building seed filter... [0.002655s] Searching alignments... [0.276437s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014987s] Building query seed array... [0.375975s] Computing hash join... [0.100359s] Building seed filter... [0.003227s] Searching alignments... [0.197895s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016364s] Building query seed array... [0.461904s] Computing hash join... [0.10078s] Building seed filter... [0.004151s] Searching alignments... [0.171421s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.013732s] Building query seed array... [0.479386s] Computing hash join... [0.099134s] Building seed filter... [0.003026s] Searching alignments... [1.74361s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015896s] Building query seed array... [0.374985s] Computing hash join... [0.097492s] Building seed filter... [0.002502s] Searching alignments... [2.06881s] Deallocating buffers... [4.8e-05s] Computing alignments... [49.0295s] Deallocating reference... [3.7e-05s] Loading reference sequences... [6.7e-05s] Deallocating buffers... [0.008073s] Deallocating queries... [0.014107s] Loading query sequences... [1.9e-05s] Closing the input file... [3.5e-05s] Closing the output file... [0.000947s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [7e-06s] Total time = 110.138s Reported 3239184 pairwise alignments, 3239184 HSPs. 3239184 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380822_S3_L002_R1_001.fastp-trim.202004144633.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380822_S3_L002_R1_001.fastp-trim.202004144633.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000288s] #Target sequences to report alignments for: 1 Opening the input file... [0.446814s] Opening the output file... [0.000478s] Loading query sequences... [24.4489s] Masking queries... [22.2685s] Building query seed set... [0.13488s] Algorithm: Double-indexed Building query histograms... [0.652199s] Allocating buffers... [0.00107s] Loading reference sequences... [0.022668s] Masking reference... [0.034845s] Initializing temporary storage... [0.002445s] Building reference histograms... [0.009235s] Allocating buffers... [0.000176s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009393s] Building query seed array... [0.438696s] Computing hash join... [0.152592s] Building seed filter... [0.002541s] Searching alignments... [0.478007s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018894s] Building query seed array... [0.522976s] Computing hash join... [0.123806s] Building seed filter... [0.00262s] Searching alignments... [0.276728s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016212s] Building query seed array... [0.515601s] Computing hash join... [0.118052s] Building seed filter... [0.003239s] Searching alignments... [7.71909s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.01694s] Building query seed array... [0.422484s] Computing hash join... [0.118272s] Building seed filter... [0.00437s] Searching alignments... [3.22082s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.016154s] Building query seed array... [0.370431s] Computing hash join... [0.095797s] Building seed filter... [0.002454s] Searching alignments... [0.198392s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015725s] Building query seed array... [0.443422s] Computing hash join... [0.098353s] Building seed filter... [0.002469s] Searching alignments... [1.42551s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017268s] Building query seed array... [0.469503s] Computing hash join... [0.097128s] Building seed filter... [0.002542s] Searching alignments... [6.56349s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.016244s] Building query seed array... [0.360726s] Computing hash join... [0.092167s] Building seed filter... [0.00297s] Searching alignments... [1.52742s] Deallocating buffers... [3.5e-05s] Computing alignments... [48.1131s] Deallocating reference... [5.5e-05s] Loading reference sequences... [8.9e-05s] Deallocating buffers... [0.007292s] Deallocating queries... [0.013886s] Loading query sequences... [2.1e-05s] Closing the input file... [3.9e-05s] Closing the output file... [0.000937s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 122.241s Reported 3017749 pairwise alignments, 3017749 HSPs. 3017749 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380822_S3_L002_R2_001.fastp-trim.202004144633.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380822_S3_L002_R2_001.fastp-trim.202004144633.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000311s] #Target sequences to report alignments for: 1 Opening the input file... [0.746257s] Opening the output file... [0.000482s] Loading query sequences... [21.9117s] Masking queries... [22.5996s] Building query seed set... [0.136731s] Algorithm: Double-indexed Building query histograms... [0.652914s] Allocating buffers... [0.000754s] Loading reference sequences... [0.018546s] Masking reference... [0.03317s] Initializing temporary storage... [0.003677s] Building reference histograms... [0.012236s] Allocating buffers... [0.000437s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.018954s] Building query seed array... [0.422093s] Computing hash join... [0.151861s] Building seed filter... [0.002454s] Searching alignments... [0.515257s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018065s] Building query seed array... [0.511057s] Computing hash join... [0.11516s] Building seed filter... [0.002622s] Searching alignments... [0.298753s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.021954s] Building query seed array... [0.563333s] Computing hash join... [0.1164s] Building seed filter... [0.002481s] Searching alignments... [0.262146s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014746s] Building query seed array... [0.421621s] Computing hash join... [0.119395s] Building seed filter... [0.002922s] Searching alignments... [5.939s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.017028s] Building query seed array... [0.371994s] Computing hash join... [0.096352s] Building seed filter... [0.002622s] Searching alignments... [0.871927s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015326s] Building query seed array... [0.468249s] Computing hash join... [0.102701s] Building seed filter... [0.003078s] Searching alignments... [4.14077s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016518s] Building query seed array... [0.47288s] Computing hash join... [0.100582s] Building seed filter... [0.003001s] Searching alignments... [0.202531s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014554s] Building query seed array... [0.378202s] Computing hash join... [0.101253s] Building seed filter... [0.002949s] Searching alignments... [0.179433s] Deallocating buffers... [4.5e-05s] Computing alignments... [59.4387s] Deallocating reference... [5.8e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.007635s] Deallocating queries... [0.013191s] Loading query sequences... [2e-05s] Closing the input file... [3.8e-05s] Closing the output file... [0.000347s] Closing the database file... [1.8e-05s] Deallocating taxonomy... [1e-05s] Total time = 122.742s Reported 3218883 pairwise alignments, 3218883 HSPs. 3218883 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380823_S4_L001_R1_001.fastp-trim.202004144852.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380823_S4_L001_R1_001.fastp-trim.202004144852.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7.8e-05s] #Target sequences to report alignments for: 1 Opening the input file... [1.2485s] Opening the output file... [0.000489s] Loading query sequences... [27.528s] Masking queries... [34.0775s] Building query seed set... [0.131286s] Algorithm: Double-indexed Building query histograms... [1.07516s] Allocating buffers... [0.010558s] Loading reference sequences... [0.045443s] Masking reference... [0.039468s] Initializing temporary storage... [0.003657s] Building reference histograms... [0.008804s] Allocating buffers... [0.000139s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.010414s] Building query seed array... [0.409454s] Computing hash join... [0.130776s] Building seed filter... [0.00198s] Searching alignments... [0.404459s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017677s] Building query seed array... [0.464952s] Computing hash join... [0.109141s] Building seed filter... [0.003025s] Searching alignments... [0.23934s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016126s] Building query seed array... [0.480692s] Computing hash join... [0.111512s] Building seed filter... [0.002321s] Searching alignments... [0.212989s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.012175s] Building query seed array... [0.420897s] Computing hash join... [0.107243s] Building seed filter... [0.002034s] Searching alignments... [2.6363s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014971s] Building query seed array... [0.365952s] Computing hash join... [0.090589s] Building seed filter... [0.003597s] Searching alignments... [2.23255s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016335s] Building query seed array... [0.42797s] Computing hash join... [0.095045s] Building seed filter... [0.002111s] Searching alignments... [0.14167s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.01289s] Building query seed array... [0.462483s] Computing hash join... [0.094226s] Building seed filter... [0.003408s] Searching alignments... [0.178509s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.013688s] Building query seed array... [0.346016s] Computing hash join... [0.09219s] Building seed filter... [0.002101s] Searching alignments... [0.142776s] Deallocating buffers... [1.4e-05s] Computing alignments... [45.4084s] Deallocating reference... [6e-05s] Loading reference sequences... [0.000103s] Deallocating buffers... [0.006803s] Deallocating queries... [0.012494s] Loading query sequences... [1.6e-05s] Closing the input file... [3.3e-05s] Closing the output file... [0.000876s] Closing the database file... [1.6e-05s] Deallocating taxonomy... [8e-06s] Total time = 120.208s Reported 2719649 pairwise alignments, 2719649 HSPs. 2719649 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380823_S4_L001_R2_001.fastp-trim.202004144852.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380823_S4_L001_R2_001.fastp-trim.202004144852.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.786254s] Opening the output file... [0.000473s] Loading query sequences... [22.6889s] Masking queries... [21.2392s] Building query seed set... [0.123338s] Algorithm: Double-indexed Building query histograms... [0.656316s] Allocating buffers... [0.001051s] Loading reference sequences... [0.023249s] Masking reference... [0.032429s] Initializing temporary storage... [0.00472s] Building reference histograms... [0.008061s] Allocating buffers... [0.000178s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.012952s] Building query seed array... [0.39302s] Computing hash join... [0.127042s] Building seed filter... [0.002015s] Searching alignments... [0.437996s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016595s] Building query seed array... [0.496797s] Computing hash join... [0.112261s] Building seed filter... [0.002292s] Searching alignments... [0.729157s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.01851s] Building query seed array... [0.496778s] Computing hash join... [0.110242s] Building seed filter... [0.002444s] Searching alignments... [4.96772s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015936s] Building query seed array... [0.394981s] Computing hash join... [0.112582s] Building seed filter... [0.002272s] Searching alignments... [5.19337s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.017864s] Building query seed array... [0.349889s] Computing hash join... [0.093282s] Building seed filter... [0.001912s] Searching alignments... [0.164632s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016648s] Building query seed array... [0.42222s] Computing hash join... [0.094561s] Building seed filter... [0.001896s] Searching alignments... [6.51764s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.021983s] Building query seed array... [0.439654s] Computing hash join... [0.097473s] Building seed filter... [0.003947s] Searching alignments... [0.181599s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.013646s] Building query seed array... [0.370764s] Computing hash join... [0.098491s] Building seed filter... [0.002024s] Searching alignments... [0.154116s] Deallocating buffers... [3.5e-05s] Computing alignments... [44.8201s] Deallocating reference... [5.9e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.008041s] Deallocating queries... [0.014161s] Loading query sequences... [2.2e-05s] Closing the input file... [4.1e-05s] Closing the output file... [0.000931s] Closing the database file... [4.3e-05s] Deallocating taxonomy... [9e-06s] Total time = 113.219s Reported 2824907 pairwise alignments, 2824907 HSPs. 2824907 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380823_S4_L002_R1_001.fastp-trim.202004145106.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380823_S4_L002_R1_001.fastp-trim.202004145106.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.8e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.209088s] Opening the output file... [0.000467s] Loading query sequences... [25.5744s] Masking queries... [20.8795s] Building query seed set... [0.1254s] Algorithm: Double-indexed Building query histograms... [0.604347s] Allocating buffers... [0.001067s] Loading reference sequences... [0.022288s] Masking reference... [0.033247s] Initializing temporary storage... [0.002122s] Building reference histograms... [0.011159s] Allocating buffers... [0.000425s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.017896s] Building query seed array... [0.38647s] Computing hash join... [0.125409s] Building seed filter... [0.002378s] Searching alignments... [0.400195s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018121s] Building query seed array... [0.464375s] Computing hash join... [0.122329s] Building seed filter... [0.022703s] Searching alignments... [0.245496s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.015668s] Building query seed array... [0.506271s] Computing hash join... [0.107093s] Building seed filter... [0.002433s] Searching alignments... [0.213112s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013284s] Building query seed array... [0.419264s] Computing hash join... [0.107206s] Building seed filter... [0.003357s] Searching alignments... [0.208998s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.01172s] Building query seed array... [0.349438s] Computing hash join... [0.08896s] Building seed filter... [0.002799s] Searching alignments... [0.160998s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.014707s] Building query seed array... [0.455523s] Computing hash join... [0.100842s] Building seed filter... [0.004692s] Searching alignments... [0.146493s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.011088s] Building query seed array... [0.447904s] Computing hash join... [0.090988s] Building seed filter... [0.002788s] Searching alignments... [1.2497s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.016124s] Building query seed array... [0.35504s] Computing hash join... [0.090118s] Building seed filter... [0.004368s] Searching alignments... [0.142178s] Deallocating buffers... [3e-05s] Computing alignments... [43.0316s] Deallocating reference... [5.2e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.007144s] Deallocating queries... [0.013438s] Loading query sequences... [2e-05s] Closing the input file... [4e-05s] Closing the output file... [0.000355s] Closing the database file... [8e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 97.741s Reported 2723117 pairwise alignments, 2723117 HSPs. 2723117 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380823_S4_L002_R2_001.fastp-trim.202004145106.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380823_S4_L002_R2_001.fastp-trim.202004145106.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000257s] #Target sequences to report alignments for: 1 Opening the input file... [0.436601s] Opening the output file... [0.000485s] Loading query sequences... [21.3508s] Masking queries... [21.2063s] Building query seed set... [0.123552s] Algorithm: Double-indexed Building query histograms... [0.61939s] Allocating buffers... [0.000858s] Loading reference sequences... [0.024279s] Masking reference... [0.030069s] Initializing temporary storage... [0.004322s] Building reference histograms... [0.013391s] Allocating buffers... [0.000438s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.021275s] Building query seed array... [0.39897s] Computing hash join... [0.120963s] Building seed filter... [0.003315s] Searching alignments... [0.432909s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017231s] Building query seed array... [0.476151s] Computing hash join... [0.109073s] Building seed filter... [0.002681s] Searching alignments... [0.253803s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.014881s] Building query seed array... [0.491049s] Computing hash join... [0.110667s] Building seed filter... [0.00265s] Searching alignments... [0.59035s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015471s] Building query seed array... [0.417415s] Computing hash join... [0.112984s] Building seed filter... [0.002677s] Searching alignments... [5.82875s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.0194s] Building query seed array... [0.347567s] Computing hash join... [0.087952s] Building seed filter... [0.004014s] Searching alignments... [0.169538s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.016059s] Building query seed array... [0.425615s] Computing hash join... [0.092008s] Building seed filter... [0.002795s] Searching alignments... [0.14601s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.014979s] Building query seed array... [0.470868s] Computing hash join... [0.091551s] Building seed filter... [0.002936s] Searching alignments... [7.53977s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.019884s] Building query seed array... [0.351678s] Computing hash join... [0.091692s] Building seed filter... [0.002444s] Searching alignments... [0.154175s] Deallocating buffers... [3.1e-05s] Computing alignments... [43.7547s] Deallocating reference... [4.9e-05s] Loading reference sequences... [8.8e-05s] Deallocating buffers... [0.007789s] Deallocating queries... [0.013449s] Loading query sequences... [1.9e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000697s] Closing the database file... [1.7e-05s] Deallocating taxonomy... [8e-06s] Total time = 107.141s Reported 2825819 pairwise alignments, 2825819 HSPs. 2825819 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380824_S5_L001_R1_001.fastp-trim.202004145320.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380824_S5_L001_R1_001.fastp-trim.202004145320.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000266s] #Target sequences to report alignments for: 1 Opening the input file... [0.163677s] Opening the output file... [0.000483s] Loading query sequences... [23.4787s] Masking queries... [23.1357s] Building query seed set... [0.128741s] Algorithm: Double-indexed Building query histograms... [0.704651s] Allocating buffers... [0.001048s] Loading reference sequences... [0.02325s] Masking reference... [0.034449s] Initializing temporary storage... [0.0039s] Building reference histograms... [0.009042s] Allocating buffers... [0.00033s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.013786s] Building query seed array... [0.438684s] Computing hash join... [0.132722s] Building seed filter... [0.002448s] Searching alignments... [0.521556s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017752s] Building query seed array... [0.54304s] Computing hash join... [0.129167s] Building seed filter... [0.002632s] Searching alignments... [0.29946s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.015339s] Building query seed array... [0.547114s] Computing hash join... [0.127763s] Building seed filter... [0.003164s] Searching alignments... [0.274668s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013353s] Building query seed array... [0.450774s] Computing hash join... [0.129458s] Building seed filter... [0.003257s] Searching alignments... [0.352116s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015345s] Building query seed array... [0.389192s] Computing hash join... [0.103014s] Building seed filter... [0.002677s] Searching alignments... [3.66547s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018971s] Building query seed array... [0.481543s] Computing hash join... [0.104278s] Building seed filter... [0.002827s] Searching alignments... [0.172665s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.01432s] Building query seed array... [0.485837s] Computing hash join... [0.102531s] Building seed filter... [0.002361s] Searching alignments... [0.229722s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.013918s] Building query seed array... [0.434373s] Computing hash join... [0.104797s] Building seed filter... [0.002787s] Searching alignments... [0.182043s] Deallocating buffers... [4.8e-05s] Computing alignments... [57.2083s] Deallocating reference... [4.9e-05s] Loading reference sequences... [8.7e-05s] Deallocating buffers... [0.008033s] Deallocating queries... [0.013522s] Loading query sequences... [1.8e-05s] Closing the input file... [3.2e-05s] Closing the output file... [0.000982s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 115.548s Reported 3438536 pairwise alignments, 3438536 HSPs. 3438536 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380824_S5_L001_R2_001.fastp-trim.202004145320.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380824_S5_L001_R2_001.fastp-trim.202004145320.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000235s] #Target sequences to report alignments for: 1 Opening the input file... [4.42767s] Opening the output file... [0.000471s] Loading query sequences... [26.1152s] Masking queries... [36.4592s] Building query seed set... [0.126401s] Algorithm: Double-indexed Building query histograms... [0.696482s] Allocating buffers... [0.001051s] Loading reference sequences... [0.02122s] Masking reference... [0.035681s] Initializing temporary storage... [0.00304s] Building reference histograms... [0.00787s] Allocating buffers... [0.000161s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.010445s] Building query seed array... [0.446297s] Computing hash join... [0.128829s] Building seed filter... [0.002735s] Searching alignments... [0.554047s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.01923s] Building query seed array... [0.559911s] Computing hash join... [0.130821s] Building seed filter... [0.002976s] Searching alignments... [0.328073s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018252s] Building query seed array... [0.554899s] Computing hash join... [0.12579s] Building seed filter... [0.003029s] Searching alignments... [0.296466s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013733s] Building query seed array... [0.530788s] Computing hash join... [0.130325s] Building seed filter... [0.00414s] Searching alignments... [4.75066s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.01757s] Building query seed array... [0.41459s] Computing hash join... [0.103828s] Building seed filter... [0.002794s] Searching alignments... [0.299917s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015597s] Building query seed array... [0.503881s] Computing hash join... [0.105374s] Building seed filter... [0.003027s] Searching alignments... [2.94435s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018718s] Building query seed array... [0.495127s] Computing hash join... [0.106654s] Building seed filter... [0.002697s] Searching alignments... [0.228047s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015227s] Building query seed array... [0.398843s] Computing hash join... [0.109321s] Building seed filter... [0.003381s] Searching alignments... [0.197411s] Deallocating buffers... [3.2e-05s] Computing alignments... [50.1941s] Deallocating reference... [5.4e-05s] Loading reference sequences... [7.5e-05s] Deallocating buffers... [0.007604s] Deallocating queries... [0.015029s] Loading query sequences... [2.4e-05s] Closing the input file... [4e-05s] Closing the output file... [1.21218s] Closing the database file... [8.6e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 134.004s Reported 3552183 pairwise alignments, 3552183 HSPs. 3552183 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380824_S5_L002_R1_001.fastp-trim.202004145558.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380824_S5_L002_R1_001.fastp-trim.202004145558.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.6e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.343475s] Opening the output file... [0.000473s] Loading query sequences... [26.3701s] Masking queries... [23.9637s] Building query seed set... [0.136261s] Algorithm: Double-indexed Building query histograms... [0.703423s] Allocating buffers... [0.001047s] Loading reference sequences... [0.0226s] Masking reference... [0.033424s] Initializing temporary storage... [0.002361s] Building reference histograms... [0.011029s] Allocating buffers... [0.000432s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.017209s] Building query seed array... [0.437786s] Computing hash join... [0.142034s] Building seed filter... [0.002125s] Searching alignments... [0.603234s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017013s] Building query seed array... [0.524783s] Computing hash join... [0.128127s] Building seed filter... [0.003515s] Searching alignments... [0.303596s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017225s] Building query seed array... [0.565658s] Computing hash join... [0.126725s] Building seed filter... [0.002146s] Searching alignments... [0.271312s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014653s] Building query seed array... [0.429982s] Computing hash join... [0.120631s] Building seed filter... [0.002055s] Searching alignments... [0.258011s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013726s] Building query seed array... [0.383592s] Computing hash join... [0.105252s] Building seed filter... [0.002269s] Searching alignments... [0.209406s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018434s] Building query seed array... [0.474612s] Computing hash join... [0.101857s] Building seed filter... [0.003381s] Searching alignments... [5.48862s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.021335s] Building query seed array... [0.480895s] Computing hash join... [0.100504s] Building seed filter... [0.002089s] Searching alignments... [0.222155s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012266s] Building query seed array... [0.398332s] Computing hash join... [0.109382s] Building seed filter... [0.002008s] Searching alignments... [0.183377s] Deallocating buffers... [3.6e-05s] Computing alignments... [61.7239s] Deallocating reference... [5.9e-05s] Loading reference sequences... [9.9e-05s] Deallocating buffers... [0.007357s] Deallocating queries... [0.014626s] Loading query sequences... [2.2e-05s] Closing the input file... [4.3e-05s] Closing the output file... [0.000962s] Closing the database file... [5.7e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 125.743s Reported 3425420 pairwise alignments, 3425420 HSPs. 3425420 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380824_S5_L002_R2_001.fastp-trim.202004145558.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380824_S5_L002_R2_001.fastp-trim.202004145558.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000148s] #Target sequences to report alignments for: 1 Opening the input file... [0.882555s] Opening the output file... [0.000481s] Loading query sequences... [22.8404s] Masking queries... [23.2638s] Building query seed set... [0.132581s] Algorithm: Double-indexed Building query histograms... [0.757272s] Allocating buffers... [0.001036s] Loading reference sequences... [0.022836s] Masking reference... [0.029355s] Initializing temporary storage... [0.005196s] Building reference histograms... [0.010695s] Allocating buffers... [0.000168s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.010403s] Building query seed array... [0.448914s] Computing hash join... [0.142398s] Building seed filter... [0.003443s] Searching alignments... [0.553497s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017895s] Building query seed array... [0.562804s] Computing hash join... [0.13104s] Building seed filter... [0.003048s] Searching alignments... [4.1519s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.021673s] Building query seed array... [0.547603s] Computing hash join... [0.121955s] Building seed filter... [0.003275s] Searching alignments... [5.19273s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.021008s] Building query seed array... [0.464447s] Computing hash join... [0.130059s] Building seed filter... [0.003021s] Searching alignments... [6.2576s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.020191s] Building query seed array... [0.421198s] Computing hash join... [0.107094s] Building seed filter... [0.003712s] Searching alignments... [4.07849s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.021761s] Building query seed array... [0.480779s] Computing hash join... [0.104637s] Building seed filter... [0.003566s] Searching alignments... [3.03082s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.020258s] Building query seed array... [0.488695s] Computing hash join... [0.102233s] Building seed filter... [0.003266s] Searching alignments... [0.219176s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015518s] Building query seed array... [0.397475s] Computing hash join... [0.104445s] Building seed filter... [0.003204s] Searching alignments... [0.19566s] Deallocating buffers... [4.4e-05s] Computing alignments... [53.8994s] Deallocating reference... [4.1e-05s] Loading reference sequences... [7.1e-05s] Deallocating buffers... [0.008127s] Deallocating queries... [0.015854s] Loading query sequences... [1.8e-05s] Closing the input file... [4.5e-05s] Closing the output file... [0.000926s] Closing the database file... [7.6e-05s] Deallocating taxonomy... [4e-05s] Total time = 130.569s Reported 3537348 pairwise alignments, 3537348 HSPs. 3537348 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380825_S6_L001_R1_001.fastp-trim.202004145835.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380825_S6_L001_R1_001.fastp-trim.202004145835.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.8e-05s] #Target sequences to report alignments for: 1 Opening the input file... [1.63098s] Opening the output file... [0.000469s] Loading query sequences... [29.9805s] Masking queries... [24.474s] Building query seed set... [0.127231s] Algorithm: Double-indexed Building query histograms... [0.707101s] Allocating buffers... [0.001039s] Loading reference sequences... [0.022333s] Masking reference... [0.03115s] Initializing temporary storage... [0.004006s] Building reference histograms... [0.008921s] Allocating buffers... [0.000136s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.011523s] Building query seed array... [0.461107s] Computing hash join... [0.161056s] Building seed filter... [0.002878s] Searching alignments... [0.542443s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.021657s] Building query seed array... [0.57227s] Computing hash join... [0.139076s] Building seed filter... [0.002282s] Searching alignments... [0.306991s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018101s] Building query seed array... [0.580068s] Computing hash join... [0.132503s] Building seed filter... [0.002333s] Searching alignments... [0.279412s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014738s] Building query seed array... [0.465019s] Computing hash join... [0.132912s] Building seed filter... [0.002355s] Searching alignments... [0.265129s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013907s] Building query seed array... [0.407024s] Computing hash join... [0.111304s] Building seed filter... [0.003392s] Searching alignments... [4.99709s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018161s] Building query seed array... [0.496717s] Computing hash join... [0.110949s] Building seed filter... [0.00215s] Searching alignments... [0.1816s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.013803s] Building query seed array... [0.507407s] Computing hash join... [0.111869s] Building seed filter... [0.002312s] Searching alignments... [0.231519s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014962s] Building query seed array... [0.412681s] Computing hash join... [0.112992s] Building seed filter... [0.00331s] Searching alignments... [0.186587s] Deallocating buffers... [4.7e-05s] Computing alignments... [56.3471s] Deallocating reference... [6.3e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.009371s] Deallocating queries... [0.015727s] Loading query sequences... [1.9e-05s] Closing the input file... [4e-05s] Closing the output file... [0.001633s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 125.501s Reported 3356114 pairwise alignments, 3356114 HSPs. 3356114 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380825_S6_L001_R2_001.fastp-trim.202004145835.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380825_S6_L001_R2_001.fastp-trim.202004145835.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7.7e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.196089s] Opening the output file... [0.00047s] Loading query sequences... [24.9007s] Masking queries... [23.6101s] Building query seed set... [0.124661s] Algorithm: Double-indexed Building query histograms... [0.912905s] Allocating buffers... [0.001346s] Loading reference sequences... [0.025863s] Masking reference... [0.034735s] Initializing temporary storage... [0.004801s] Building reference histograms... [0.014462s] Allocating buffers... [0.00019s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.015532s] Building query seed array... [0.476756s] Computing hash join... [0.151195s] Building seed filter... [0.002312s] Searching alignments... [8.1671s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.01745s] Building query seed array... [0.574652s] Computing hash join... [0.34208s] Building seed filter... [0.003421s] Searching alignments... [19.9855s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.021333s] Building query seed array... [0.584644s] Computing hash join... [0.133501s] Building seed filter... [0.002196s] Searching alignments... [0.499207s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014996s] Building query seed array... [0.466988s] Computing hash join... [0.141738s] Building seed filter... [0.002195s] Searching alignments... [5.39454s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.016184s] Building query seed array... [0.452706s] Computing hash join... [0.117028s] Building seed filter... [0.00231s] Searching alignments... [6.30636s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.021612s] Building query seed array... [0.530991s] Computing hash join... [0.116079s] Building seed filter... [0.002146s] Searching alignments... [0.186431s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.015821s] Building query seed array... [0.731315s] Computing hash join... [0.117539s] Building seed filter... [0.00199s] Searching alignments... [0.22271s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014534s] Building query seed array... [0.41405s] Computing hash join... [0.110643s] Building seed filter... [0.002317s] Searching alignments... [0.198479s] Deallocating buffers... [4.9e-05s] Computing alignments... [49.1656s] Deallocating reference... [4.9e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.008249s] Deallocating queries... [0.016475s] Loading query sequences... [5.9e-05s] Closing the input file... [9.8e-05s] Closing the output file... [0.001022s] Closing the database file... [6.8e-05s] Deallocating taxonomy... [3.1e-05s] Total time = 145.683s Reported 3452804 pairwise alignments, 3452804 HSPs. 3452804 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380825_S6_L002_R1_001.fastp-trim.202004140109.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380825_S6_L002_R1_001.fastp-trim.202004140109.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [9.4e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.352768s] Opening the output file... [0.000552s] Loading query sequences... [23.6901s] Masking queries... [25.4356s] Building query seed set... [0.147631s] Algorithm: Double-indexed Building query histograms... [0.739441s] Allocating buffers... [0.000893s] Loading reference sequences... [0.020083s] Masking reference... [0.03117s] Initializing temporary storage... [0.002728s] Building reference histograms... [0.008374s] Allocating buffers... [0.000396s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.007644s] Building query seed array... [0.463501s] Computing hash join... [0.133527s] Building seed filter... [0.00286s] Searching alignments... [0.527755s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.019719s] Building query seed array... [0.564016s] Computing hash join... [0.138034s] Building seed filter... [0.002617s] Searching alignments... [0.305606s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.015976s] Building query seed array... [0.593351s] Computing hash join... [0.133487s] Building seed filter... [0.002799s] Searching alignments... [0.330916s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.016729s] Building query seed array... [0.456954s] Computing hash join... [0.127873s] Building seed filter... [0.002605s] Searching alignments... [3.80169s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.017701s] Building query seed array... [0.40228s] Computing hash join... [0.106928s] Building seed filter... [0.00242s] Searching alignments... [2.3464s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.0189s] Building query seed array... [0.496834s] Computing hash join... [0.110926s] Building seed filter... [0.004611s] Searching alignments... [0.182544s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.01264s] Building query seed array... [0.511112s] Computing hash join... [0.10858s] Building seed filter... [0.002528s] Searching alignments... [0.226114s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014062s] Building query seed array... [0.413044s] Computing hash join... [0.107795s] Building seed filter... [0.003007s] Searching alignments... [1.35214s] Deallocating buffers... [4.6e-05s] Computing alignments... [58.2324s] Deallocating reference... [5.5e-05s] Loading reference sequences... [8e-05s] Deallocating buffers... [0.005204s] Deallocating queries... [0.011373s] Loading query sequences... [1.7e-05s] Closing the input file... [3.2e-05s] Closing the output file... [0.00085s] Closing the database file... [1.8e-05s] Deallocating taxonomy... [7e-06s] Total time = 122.857s Reported 3357666 pairwise alignments, 3357666 HSPs. 3357666 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380825_S6_L002_R2_001.fastp-trim.202004140109.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/380825_S6_L002_R2_001.fastp-trim.202004140109.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000232s] #Target sequences to report alignments for: 1 Opening the input file... [0.331874s] Opening the output file... [0.000489s] Loading query sequences... [24.5177s] Masking queries... [26.0372s] Building query seed set... [0.12269s] Algorithm: Double-indexed Building query histograms... [0.724345s] Allocating buffers... [0.001036s] Loading reference sequences... [0.025157s] Masking reference... [0.033936s] Initializing temporary storage... [0.002303s] Building reference histograms... [0.011495s] Allocating buffers... [0.000149s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.012453s] Building query seed array... [0.470028s] Computing hash join... [0.169647s] Building seed filter... [0.002713s] Searching alignments... [0.55714s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016932s] Building query seed array... [0.56883s] Computing hash join... [0.133395s] Building seed filter... [0.004255s] Searching alignments... [0.326133s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016703s] Building query seed array... [0.580902s] Computing hash join... [0.133136s] Building seed filter... [0.002701s] Searching alignments... [0.285171s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.012914s] Building query seed array... [0.45995s] Computing hash join... [0.1351s] Building seed filter... [0.002664s] Searching alignments... [0.269943s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013949s] Building query seed array... [0.41143s] Computing hash join... [0.108847s] Building seed filter... [0.004248s] Searching alignments... [0.231998s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018585s] Building query seed array... [0.508672s] Computing hash join... [0.113163s] Building seed filter... [0.002502s] Searching alignments... [0.183922s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018189s] Building query seed array... [0.518387s] Computing hash join... [0.111379s] Building seed filter... [0.002415s] Searching alignments... [0.223111s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015758s] Building query seed array... [0.415431s] Computing hash join... [0.114773s] Building seed filter... [0.002666s] Searching alignments... [0.196869s] Deallocating buffers... [4.4e-05s] Computing alignments... [50.0736s] Deallocating reference... [4.4e-05s] Loading reference sequences... [7.4e-05s] Deallocating buffers... [0.008766s] Deallocating queries... [0.013493s] Loading query sequences... [1.9e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000349s] Closing the database file... [2.2e-05s] Deallocating taxonomy... [1e-05s] Total time = 109.367s Reported 3453426 pairwise alignments, 3453426 HSPs. 3453426 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/425_R1_001.fastp-trim.202003182722.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/425_R1_001.fastp-trim.202003182722.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.8e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.006225s] Opening the output file... [0.000313s] Loading query sequences... [121.887s] Masking queries... [174.898s] Building query seed set... [0.686932s] Algorithm: Double-indexed Building query histograms... [1.93759s] Allocating buffers... [0.000864s] Loading reference sequences... [0.021705s] Masking reference... [0.0312s] Initializing temporary storage... [0.004505s] Building reference histograms... [0.008705s] Allocating buffers... [0.00042s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.01186s] Building query seed array... [0.996737s] Computing hash join... [0.073066s] Building seed filter... [0.002493s] Searching alignments... [0.151119s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.016778s] Building query seed array... [1.01168s] Computing hash join... [0.046201s] Building seed filter... [0.002493s] Searching alignments... [0.12563s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.0176s] Building query seed array... [1.01838s] Computing hash join... [0.046961s] Building seed filter... [0.002361s] Searching alignments... [0.084555s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.012343s] Building query seed array... [1.03562s] Computing hash join... [0.05108s] Building seed filter... [0.002469s] Searching alignments... [0.080126s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.012822s] Building query seed array... [0.887546s] Computing hash join... [0.037686s] Building seed filter... [0.002456s] Searching alignments... [0.042756s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.009186s] Building query seed array... [0.923938s] Computing hash join... [0.037289s] Building seed filter... [0.00245s] Searching alignments... [0.046384s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.0137s] Building query seed array... [0.917851s] Computing hash join... [0.030809s] Building seed filter... [0.002402s] Searching alignments... [0.039358s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012089s] Building query seed array... [0.888421s] Computing hash join... [0.036014s] Building seed filter... [0.002418s] Searching alignments... [0.03994s] Deallocating buffers... [2.1e-05s] Computing alignments... [241.957s] Deallocating reference... [4e-05s] Loading reference sequences... [8.4e-05s] Deallocating buffers... [0.003918s] Deallocating queries... [0.065764s] Loading query sequences... [2e-05s] Closing the input file... [3.4e-05s] Closing the output file... [0.000259s] Closing the database file... [1.9e-05s] Deallocating taxonomy... [8e-06s] Total time = 550.827s Reported 232351 pairwise alignments, 232351 HSPs. 232351 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/425_R2_001.fastp-trim.202003182722.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/425_R2_001.fastp-trim.202003182722.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000116s] #Target sequences to report alignments for: 1 Opening the input file... [0.007608s] Opening the output file... [0.000355s] Loading query sequences... [125.785s] Masking queries... [167.109s] Building query seed set... [0.717791s] Algorithm: Double-indexed Building query histograms... [1.91756s] Allocating buffers... [0.000998s] Loading reference sequences... [0.023761s] Masking reference... [0.030894s] Initializing temporary storage... [0.00297s] Building reference histograms... [0.00819s] Allocating buffers... [0.000143s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.006649s] Building query seed array... [1.02063s] Computing hash join... [0.074113s] Building seed filter... [0.002361s] Searching alignments... [0.150121s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017914s] Building query seed array... [0.998427s] Computing hash join... [0.050966s] Building seed filter... [0.002497s] Searching alignments... [0.119283s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016874s] Building query seed array... [1.00137s] Computing hash join... [0.038627s] Building seed filter... [0.002848s] Searching alignments... [0.109918s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014977s] Building query seed array... [0.981725s] Computing hash join... [0.052906s] Building seed filter... [0.00312s] Searching alignments... [0.076584s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013133s] Building query seed array... [0.890916s] Computing hash join... [0.034336s] Building seed filter... [0.002574s] Searching alignments... [0.041791s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.013758s] Building query seed array... [0.910824s] Computing hash join... [0.029472s] Building seed filter... [0.002349s] Searching alignments... [0.046583s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016373s] Building query seed array... [0.915258s] Computing hash join... [0.030155s] Building seed filter... [0.002458s] Searching alignments... [0.03883s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015243s] Building query seed array... [0.91242s] Computing hash join... [0.038175s] Building seed filter... [0.002361s] Searching alignments... [0.040881s] Deallocating buffers... [4.2e-05s] Computing alignments... [228.263s] Deallocating reference... [5.5e-05s] Loading reference sequences... [8.3e-05s] Deallocating buffers... [0.002875s] Deallocating queries... [0.062542s] Loading query sequences... [2.2e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.000395s] Closing the database file... [1.9e-05s] Deallocating taxonomy... [9e-06s] Total time = 533.138s Reported 231478 pairwise alignments, 231478 HSPs. 231478 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/427_R1_001.fastp-trim.202003184618.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/427_R1_001.fastp-trim.202003184618.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.8e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.009873s] Opening the output file... [0.001037s] Loading query sequences... [42.5622s] Masking queries... [48.102s] Building query seed set... [0.18442s] Algorithm: Double-indexed Building query histograms... [1.12274s] Allocating buffers... [0.001055s] Loading reference sequences... [0.021978s] Masking reference... [0.032509s] Initializing temporary storage... [0.003321s] Building reference histograms... [0.012158s] Allocating buffers... [0.000379s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.014581s] Building query seed array... [0.637505s] Computing hash join... [0.162533s] Building seed filter... [0.004289s] Searching alignments... [1.13437s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.02013s] Building query seed array... [0.731771s] Computing hash join... [0.128272s] Building seed filter... [0.002502s] Searching alignments... [0.918888s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018995s] Building query seed array... [0.732161s] Computing hash join... [0.132444s] Building seed filter... [0.004403s] Searching alignments... [0.823331s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.01547s] Building query seed array... [0.619867s] Computing hash join... [0.140227s] Building seed filter... [0.003091s] Searching alignments... [0.585874s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014097s] Building query seed array... [0.538834s] Computing hash join... [0.115359s] Building seed filter... [0.002891s] Searching alignments... [0.604035s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018632s] Building query seed array... [0.640473s] Computing hash join... [0.115459s] Building seed filter... [0.002513s] Searching alignments... [0.46707s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017997s] Building query seed array... [0.630775s] Computing hash join... [0.097411s] Building seed filter... [0.002515s] Searching alignments... [0.380763s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015315s] Building query seed array... [0.53962s] Computing hash join... [0.100503s] Building seed filter... [0.003093s] Searching alignments... [0.352713s] Deallocating buffers... [3.5e-05s] Computing alignments... [89.0711s] Deallocating reference... [5e-05s] Loading reference sequences... [0.00011s] Deallocating buffers... [0.009201s] Deallocating queries... [0.025296s] Loading query sequences... [2e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.000452s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 192.807s Reported 1020001 pairwise alignments, 1020001 HSPs. 1020001 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/427_R2_001.fastp-trim.202003184618.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/427_R2_001.fastp-trim.202003184618.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000111s] #Target sequences to report alignments for: 1 Opening the input file... [0.007997s] Opening the output file... [0.00093s] Loading query sequences... [41.1442s] Masking queries... [69.0958s] Building query seed set... [0.184s] Algorithm: Double-indexed Building query histograms... [0.945731s] Allocating buffers... [0.001042s] Loading reference sequences... [0.021291s] Masking reference... [0.031541s] Initializing temporary storage... [0.003706s] Building reference histograms... [0.008533s] Allocating buffers... [0.000157s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009977s] Building query seed array... [0.572089s] Computing hash join... [0.13106s] Building seed filter... [0.002353s] Searching alignments... [1.14499s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.02128s] Building query seed array... [0.653825s] Computing hash join... [0.118946s] Building seed filter... [0.002373s] Searching alignments... [0.855593s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016814s] Building query seed array... [0.663078s] Computing hash join... [0.113275s] Building seed filter... [0.00271s] Searching alignments... [0.69924s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014523s] Building query seed array... [0.556934s] Computing hash join... [0.107366s] Building seed filter... [0.002891s] Searching alignments... [0.682048s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014495s] Building query seed array... [0.490125s] Computing hash join... [0.09036s] Building seed filter... [0.002291s] Searching alignments... [0.44628s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018604s] Building query seed array... [0.573046s] Computing hash join... [0.087756s] Building seed filter... [0.002379s] Searching alignments... [0.43009s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017925s] Building query seed array... [0.583516s] Computing hash join... [0.090229s] Building seed filter... [0.002357s] Searching alignments... [0.350482s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.01247s] Building query seed array... [0.514392s] Computing hash join... [0.091102s] Building seed filter... [0.002733s] Searching alignments... [0.350709s] Deallocating buffers... [3.4e-05s] Computing alignments... [87.8645s] Deallocating reference... [4.6e-05s] Loading reference sequences... [0.000105s] Deallocating buffers... [0.008437s] Deallocating queries... [0.026519s] Loading query sequences... [2.2e-05s] Closing the input file... [3.9e-05s] Closing the output file... [0.000313s] Closing the database file... [2.1e-05s] Deallocating taxonomy... [9e-06s] Total time = 210.044s Reported 1020978 pairwise alignments, 1020978 HSPs. 1020978 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/445_R1_001.fastp-trim.202003185018.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/445_R1_001.fastp-trim.202003185018.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000237s] #Target sequences to report alignments for: 1 Opening the input file... [0.00861s] Opening the output file... [0.000339s] Loading query sequences... [71.1905s] Masking queries... [77.5366s] Building query seed set... [0.26637s] Algorithm: Double-indexed Building query histograms... [2.29999s] Allocating buffers... [0.001074s] Loading reference sequences... [0.021058s] Masking reference... [0.032389s] Initializing temporary storage... [0.004113s] Building reference histograms... [0.01135s] Allocating buffers... [0.000137s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.008869s] Building query seed array... [1.31848s] Computing hash join... [0.309927s] Building seed filter... [0.003153s] Searching alignments... [1.40631s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018837s] Building query seed array... [1.57352s] Computing hash join... [0.335043s] Building seed filter... [0.003516s] Searching alignments... [0.935399s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016951s] Building query seed array... [1.6188s] Computing hash join... [0.322152s] Building seed filter... [0.004529s] Searching alignments... [0.719616s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015224s] Building query seed array... [1.3127s] Computing hash join... [0.314498s] Building seed filter... [0.003356s] Searching alignments... [0.648562s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015202s] Building query seed array... [1.23558s] Computing hash join... [0.282944s] Building seed filter... [0.003447s] Searching alignments... [0.520035s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017345s] Building query seed array... [1.43193s] Computing hash join... [0.287737s] Building seed filter... [0.003473s] Searching alignments... [0.499864s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016998s] Building query seed array... [1.47067s] Computing hash join... [0.287113s] Building seed filter... [0.003612s] Searching alignments... [0.520639s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.016051s] Building query seed array... [1.17317s] Computing hash join... [0.299632s] Building seed filter... [0.004676s] Searching alignments... [0.518901s] Deallocating buffers... [4.6e-05s] Computing alignments... [144.58s] Deallocating reference... [5.4e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.01974s] Deallocating queries... [0.033712s] Loading query sequences... [2.2e-05s] Closing the input file... [3.6e-05s] Closing the output file... [0.000994s] Closing the database file... [2.4e-05s] Deallocating taxonomy... [9e-06s] Total time = 315.728s Reported 4877160 pairwise alignments, 4877160 HSPs. 4877160 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/445_R2_001.fastp-trim.202003185018.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/445_R2_001.fastp-trim.202003185018.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.00032s] #Target sequences to report alignments for: 1 Opening the input file... [0.007366s] Opening the output file... [0.000457s] Loading query sequences... [71.9891s] Masking queries... [75.4664s] Building query seed set... [0.263397s] Algorithm: Double-indexed Building query histograms... [2.36332s] Allocating buffers... [0.001077s] Loading reference sequences... [0.02271s] Masking reference... [0.033267s] Initializing temporary storage... [0.004397s] Building reference histograms... [0.007994s] Allocating buffers... [0.000142s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.008301s] Building query seed array... [1.31544s] Computing hash join... [0.306209s] Building seed filter... [0.002974s] Searching alignments... [1.32769s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.021623s] Building query seed array... [1.56052s] Computing hash join... [0.330355s] Building seed filter... [0.003362s] Searching alignments... [0.849866s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019163s] Building query seed array... [1.59479s] Computing hash join... [0.321171s] Building seed filter... [0.00347s] Searching alignments... [0.709963s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015443s] Building query seed array... [1.2889s] Computing hash join... [0.322471s] Building seed filter... [0.003315s] Searching alignments... [0.631631s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014865s] Building query seed array... [1.18333s] Computing hash join... [0.26166s] Building seed filter... [0.00289s] Searching alignments... [0.51655s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.018635s] Building query seed array... [1.43027s] Computing hash join... [0.273126s] Building seed filter... [0.003295s] Searching alignments... [0.493547s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.018931s] Building query seed array... [1.51204s] Computing hash join... [0.269528s] Building seed filter... [0.003526s] Searching alignments... [0.51487s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012399s] Building query seed array... [1.20516s] Computing hash join... [0.293053s] Building seed filter... [0.004628s] Searching alignments... [0.496829s] Deallocating buffers... [2.5e-05s] Computing alignments... [150.319s] Deallocating reference... [5e-05s] Loading reference sequences... [9.2e-05s] Deallocating buffers... [0.020639s] Deallocating queries... [0.034434s] Loading query sequences... [2e-05s] Closing the input file... [3.8e-05s] Closing the output file... [0.000402s] Closing the database file... [5.9e-05s] Deallocating taxonomy... [3.3e-05s] Total time = 319.926s Reported 4858221 pairwise alignments, 4858221 HSPs. 4858221 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/463_R1_001.fastp-trim.202003185732.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/463_R1_001.fastp-trim.202003185732.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.005839s] Opening the output file... [0.00092s] Loading query sequences... [45.258s] Masking queries... [49.5195s] Building query seed set... [0.189429s] Algorithm: Double-indexed Building query histograms... [1.30068s] Allocating buffers... [0.001013s] Loading reference sequences... [0.024285s] Masking reference... [0.030309s] Initializing temporary storage... [0.003355s] Building reference histograms... [0.008235s] Allocating buffers... [0.000138s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.009563s] Building query seed array... [0.782576s] Computing hash join... [0.226549s] Building seed filter... [0.004562s] Searching alignments... [0.316164s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017892s] Building query seed array... [0.873913s] Computing hash join... [0.179313s] Building seed filter... [0.004216s] Searching alignments... [0.260094s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017178s] Building query seed array... [0.87818s] Computing hash join... [0.178525s] Building seed filter... [0.002939s] Searching alignments... [0.203473s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014576s] Building query seed array... [0.766259s] Computing hash join... [0.221716s] Building seed filter... [0.003719s] Searching alignments... [0.202363s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.012409s] Building query seed array... [0.658834s] Computing hash join... [0.168721s] Building seed filter... [0.003957s] Searching alignments... [0.127964s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.015555s] Building query seed array... [0.770923s] Computing hash join... [0.169886s] Building seed filter... [0.00346s] Searching alignments... [0.156064s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016208s] Building query seed array... [0.779963s] Computing hash join... [0.149386s] Building seed filter... [0.004178s] Searching alignments... [0.107348s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014094s] Building query seed array... [0.651175s] Computing hash join... [0.131025s] Building seed filter... [0.003148s] Searching alignments... [0.097959s] Deallocating buffers... [3.6e-05s] Computing alignments... [80.3693s] Deallocating reference... [5.1e-05s] Loading reference sequences... [8.4e-05s] Deallocating buffers... [0.011467s] Deallocating queries... [0.024872s] Loading query sequences... [2.2e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.000399s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 186.112s Reported 357485 pairwise alignments, 357485 HSPs. 357485 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/463_R2_001.fastp-trim.202003185732.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/463_R2_001.fastp-trim.202003185732.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.007653s] Opening the output file... [0.001155s] Loading query sequences... [44.3533s] Masking queries... [52.2098s] Building query seed set... [0.191611s] Algorithm: Double-indexed Building query histograms... [1.05065s] Allocating buffers... [0.001007s] Loading reference sequences... [0.023155s] Masking reference... [0.034383s] Initializing temporary storage... [0.004783s] Building reference histograms... [0.008744s] Allocating buffers... [0.000173s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.010917s] Building query seed array... [0.601191s] Computing hash join... [0.132409s] Building seed filter... [0.002584s] Searching alignments... [0.306286s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.017348s] Building query seed array... [0.68726s] Computing hash join... [0.112787s] Building seed filter... [0.002686s] Searching alignments... [0.25574s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.01743s] Building query seed array... [0.709218s] Computing hash join... [0.107405s] Building seed filter... [0.002848s] Searching alignments... [0.195833s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014434s] Building query seed array... [0.583453s] Computing hash join... [0.111006s] Building seed filter... [0.003857s] Searching alignments... [0.199133s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.012553s] Building query seed array... [0.524157s] Computing hash join... [0.091193s] Building seed filter... [0.002555s] Searching alignments... [0.118771s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.017461s] Building query seed array... [0.6494s] Computing hash join... [0.094524s] Building seed filter... [0.002445s] Searching alignments... [0.114733s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017608s] Building query seed array... [0.623945s] Computing hash join... [0.092515s] Building seed filter... [0.003128s] Searching alignments... [0.105687s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012889s] Building query seed array... [0.525454s] Computing hash join... [0.091825s] Building seed filter... [0.002867s] Searching alignments... [0.09805s] Deallocating buffers... [4.4e-05s] Computing alignments... [83.6641s] Deallocating reference... [5.3e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.007477s] Deallocating queries... [0.025796s] Loading query sequences... [2.1e-05s] Closing the input file... [4e-05s] Closing the output file... [0.000265s] Closing the database file... [2.1e-05s] Deallocating taxonomy... [9e-06s] Total time = 189.011s Reported 348005 pairwise alignments, 348005 HSPs. 348005 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/481_R1_001.fastp-trim.202003180047.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/481_R1_001.fastp-trim.202003180047.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.007459s] Opening the output file... [0.000385s] Loading query sequences... [112.88s] Masking queries... [137.208s] Building query seed set... [0.396004s] Algorithm: Double-indexed Building query histograms... [2.89512s] Allocating buffers... [0.001049s] Loading reference sequences... [0.022816s] Masking reference... [0.033926s] Initializing temporary storage... [0.00345s] Building reference histograms... [0.012083s] Allocating buffers... [0.000346s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.015767s] Building query seed array... [1.59499s] Computing hash join... [0.283294s] Building seed filter... [0.00305s] Searching alignments... [1.6707s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.020365s] Building query seed array... [1.83285s] Computing hash join... [0.299412s] Building seed filter... [0.004031s] Searching alignments... [1.20628s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.017461s] Building query seed array... [1.82523s] Computing hash join... [0.319004s] Building seed filter... [0.003423s] Searching alignments... [0.995667s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015899s] Building query seed array... [1.69578s] Computing hash join... [0.316813s] Building seed filter... [0.003604s] Searching alignments... [0.943474s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014518s] Building query seed array... [1.46984s] Computing hash join... [0.259604s] Building seed filter... [0.00373s] Searching alignments... [0.687645s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.01725s] Building query seed array... [1.68446s] Computing hash join... [0.271343s] Building seed filter... [0.003216s] Searching alignments... [0.588165s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017783s] Building query seed array... [1.69097s] Computing hash join... [0.256418s] Building seed filter... [0.003913s] Searching alignments... [0.772038s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.015066s] Building query seed array... [1.44545s] Computing hash join... [0.269743s] Building seed filter... [0.003148s] Searching alignments... [0.741858s] Deallocating buffers... [4.8e-05s] Computing alignments... [232.892s] Deallocating reference... [4.8e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.017177s] Deallocating queries... [0.055793s] Loading query sequences... [2.1e-05s] Closing the input file... [3.9e-05s] Closing the output file... [0.000353s] Closing the database file... [5.8e-05s] Deallocating taxonomy... [5.2e-05s] Total time = 510.078s Reported 4167468 pairwise alignments, 4167468 HSPs. 4167468 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/481_R2_001.fastp-trim.202003180047.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/481_R2_001.fastp-trim.202003180047.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000244s] #Target sequences to report alignments for: 1 Opening the input file... [0.08616s] Opening the output file... [0.000455s] Loading query sequences... [114.324s] Masking queries... [133.571s] Building query seed set... [0.394795s] Algorithm: Double-indexed Building query histograms... [2.69231s] Allocating buffers... [0.001054s] Loading reference sequences... [0.020095s] Masking reference... [0.031063s] Initializing temporary storage... [0.003096s] Building reference histograms... [0.00809s] Allocating buffers... [0.00014s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.012777s] Building query seed array... [1.63771s] Computing hash join... [0.275278s] Building seed filter... [0.003418s] Searching alignments... [1.65809s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.021295s] Building query seed array... [1.80058s] Computing hash join... [0.305043s] Building seed filter... [0.003473s] Searching alignments... [1.19002s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016606s] Building query seed array... [1.84245s] Computing hash join... [0.293306s] Building seed filter... [0.004061s] Searching alignments... [0.99012s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015352s] Building query seed array... [1.54946s] Computing hash join... [0.292253s] Building seed filter... [0.004226s] Searching alignments... [0.917804s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013625s] Building query seed array... [1.42461s] Computing hash join... [0.273868s] Building seed filter... [0.004437s] Searching alignments... [0.729411s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.01773s] Building query seed array... [1.65806s] Computing hash join... [0.271759s] Building seed filter... [0.003588s] Searching alignments... [0.584458s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016677s] Building query seed array... [1.76827s] Computing hash join... [0.258011s] Building seed filter... [0.003167s] Searching alignments... [0.75452s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014351s] Building query seed array... [1.44239s] Computing hash join... [0.266304s] Building seed filter... [0.003512s] Searching alignments... [0.731115s] Deallocating buffers... [4.8e-05s] Computing alignments... [229.405s] Deallocating reference... [4.6e-05s] Loading reference sequences... [8.9e-05s] Deallocating buffers... [0.01864s] Deallocating queries... [0.053465s] Loading query sequences... [2.2e-05s] Closing the input file... [3.8e-05s] Closing the output file... [0.00038s] Closing the database file... [5.7e-05s] Deallocating taxonomy... [3e-05s] Total time = 504.053s Reported 4146304 pairwise alignments, 4146304 HSPs. 4146304 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/485_R1_001.fastp-trim.202003181245.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/485_R1_001.fastp-trim.202003181245.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.00667s] Opening the output file... [0.000435s] Loading query sequences... [66.167s] Masking queries... [69.066s] Building query seed set... [0.227542s] Algorithm: Double-indexed Building query histograms... [2.27923s] Allocating buffers... [0.001063s] Loading reference sequences... [0.022061s] Masking reference... [0.032657s] Initializing temporary storage... [0.005128s] Building reference histograms... [0.015098s] Allocating buffers... [0.0002s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.011207s] Building query seed array... [1.45513s] Computing hash join... [0.329505s] Building seed filter... [0.003613s] Searching alignments... [0.924541s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.019345s] Building query seed array... [1.66858s] Computing hash join... [0.372122s] Building seed filter... [0.004411s] Searching alignments... [0.995314s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.01813s] Building query seed array... [1.76259s] Computing hash join... [0.372089s] Building seed filter... [0.004381s] Searching alignments... [0.508796s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013941s] Building query seed array... [1.41046s] Computing hash join... [0.362984s] Building seed filter... [0.002925s] Searching alignments... [0.771124s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.014463s] Building query seed array... [1.25241s] Computing hash join... [0.322107s] Building seed filter... [0.003529s] Searching alignments... [0.355545s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.014883s] Building query seed array... [1.53877s] Computing hash join... [0.310793s] Building seed filter... [0.004699s] Searching alignments... [0.443366s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.016013s] Building query seed array... [1.5555s] Computing hash join... [0.31414s] Building seed filter... [0.004591s] Searching alignments... [0.356774s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012931s] Building query seed array... [1.26834s] Computing hash join... [0.351874s] Building seed filter... [0.004541s] Searching alignments... [0.855802s] Deallocating buffers... [4.6e-05s] Computing alignments... [128.628s] Deallocating reference... [4.5e-05s] Loading reference sequences... [9.3e-05s] Deallocating buffers... [0.02235s] Deallocating queries... [0.030976s] Loading query sequences... [2.1e-05s] Closing the input file... [3.8e-05s] Closing the output file... [0.000405s] Closing the database file... [5.7e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 286.707s Reported 4804260 pairwise alignments, 4804260 HSPs. 4804260 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/485_R2_001.fastp-trim.202003181245.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/485_R2_001.fastp-trim.202003181245.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.006981s] Opening the output file... [0.001037s] Loading query sequences... [67.2321s] Masking queries... [64.9219s] Building query seed set... [0.229104s] Algorithm: Double-indexed Building query histograms... [2.29092s] Allocating buffers... [0.001055s] Loading reference sequences... [0.024791s] Masking reference... [0.030686s] Initializing temporary storage... [0.005292s] Building reference histograms... [0.010805s] Allocating buffers... [0.000139s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.00964s] Building query seed array... [1.38269s] Computing hash join... [0.32562s] Building seed filter... [0.00243s] Searching alignments... [0.908809s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018022s] Building query seed array... [1.73588s] Computing hash join... [0.37476s] Building seed filter... [0.004516s] Searching alignments... [0.843759s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019484s] Building query seed array... [1.70782s] Computing hash join... [0.359583s] Building seed filter... [0.00347s] Searching alignments... [0.511933s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.014578s] Building query seed array... [1.36137s] Computing hash join... [0.364818s] Building seed filter... [0.003452s] Searching alignments... [0.769215s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.015606s] Building query seed array... [1.23983s] Computing hash join... [0.311221s] Building seed filter... [0.002339s] Searching alignments... [0.357539s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.01624s] Building query seed array... [1.6015s] Computing hash join... [0.322138s] Building seed filter... [0.002994s] Searching alignments... [0.494863s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.019303s] Building query seed array... [1.57894s] Computing hash join... [0.307537s] Building seed filter... [0.003439s] Searching alignments... [0.351648s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012455s] Building query seed array... [1.27549s] Computing hash join... [0.321841s] Building seed filter... [0.003506s] Searching alignments... [0.847206s] Deallocating buffers... [4.7e-05s] Computing alignments... [122.803s] Deallocating reference... [4.5e-05s] Loading reference sequences... [9e-05s] Deallocating buffers... [0.020649s] Deallocating queries... [0.030902s] Loading query sequences... [2.2e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.001094s] Closing the database file... [2e-05s] Deallocating taxonomy... [9e-06s] Total time = 277.612s Reported 4742712 pairwise alignments, 4742712 HSPs. 4742712 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/72_R1_001.fastp-trim.202003181709.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/72_R1_001.fastp-trim.202003181709.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7.3e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.006873s] Opening the output file... [0.000854s] Loading query sequences... [62.2862s] Masking queries... [94.7599s] Building query seed set... [0.254093s] Algorithm: Double-indexed Building query histograms... [1.81573s] Allocating buffers... [0.001048s] Loading reference sequences... [0.020879s] Masking reference... [0.031995s] Initializing temporary storage... [0.002803s] Building reference histograms... [0.006407s] Allocating buffers... [0.000433s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.008045s] Building query seed array... [1.13039s] Computing hash join... [0.275355s] Building seed filter... [0.003521s] Searching alignments... [1.5802s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018161s] Building query seed array... [1.38948s] Computing hash join... [0.276548s] Building seed filter... [0.004s] Searching alignments... [1.14688s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.019318s] Building query seed array... [1.41636s] Computing hash join... [0.264521s] Building seed filter... [0.002367s] Searching alignments... [0.902277s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.017135s] Building query seed array... [1.1277s] Computing hash join... [0.271905s] Building seed filter... [0.004543s] Searching alignments... [0.749254s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013795s] Building query seed array... [0.982316s] Computing hash join... [0.226831s] Building seed filter... [0.004187s] Searching alignments... [0.942621s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.019861s] Building query seed array... [1.21886s] Computing hash join... [0.250522s] Building seed filter... [0.004533s] Searching alignments... [0.489524s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.017909s] Building query seed array... [1.22186s] Computing hash join... [0.221458s] Building seed filter... [0.002544s] Searching alignments... [0.291589s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014488s] Building query seed array... [0.989279s] Computing hash join... [0.236241s] Building seed filter... [0.004882s] Searching alignments... [0.308313s] Deallocating buffers... [6.8e-05s] Computing alignments... [128.392s] Deallocating reference... [4.7e-05s] Loading reference sequences... [9.6e-05s] Deallocating buffers... [0.018123s] Deallocating queries... [0.029894s] Loading query sequences... [2.1e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.000354s] Closing the database file... [2e-05s] Deallocating taxonomy... [1e-05s] Total time = 305.901s Reported 3774578 pairwise alignments, 3774578 HSPs. 3774578 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/72_R2_001.fastp-trim.202003181709.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/72_R2_001.fastp-trim.202003181709.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000253s] #Target sequences to report alignments for: 1 Opening the input file... [0.006578s] Opening the output file... [0.000427s] Loading query sequences... [62.2544s] Masking queries... [67.6975s] Building query seed set... [0.257868s] Algorithm: Double-indexed Building query histograms... [1.96885s] Allocating buffers... [0.001056s] Loading reference sequences... [0.020589s] Masking reference... [0.035064s] Initializing temporary storage... [0.003098s] Building reference histograms... [0.008441s] Allocating buffers... [0.000166s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.007505s] Building query seed array... [1.12952s] Computing hash join... [0.258304s] Building seed filter... [0.002583s] Searching alignments... [1.61415s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.018881s] Building query seed array... [1.34053s] Computing hash join... [0.263532s] Building seed filter... [0.003628s] Searching alignments... [1.18775s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018978s] Building query seed array... [1.37366s] Computing hash join... [0.269053s] Building seed filter... [0.003356s] Searching alignments... [0.917869s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.015535s] Building query seed array... [1.11222s] Computing hash join... [0.275419s] Building seed filter... [0.002942s] Searching alignments... [0.742117s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.016048s] Building query seed array... [1.03578s] Computing hash join... [0.225292s] Building seed filter... [0.003268s] Searching alignments... [0.899341s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.020457s] Building query seed array... [1.19826s] Computing hash join... [0.248522s] Building seed filter... [0.004197s] Searching alignments... [0.488688s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.013956s] Building query seed array... [1.2336s] Computing hash join... [0.219994s] Building seed filter... [0.003271s] Searching alignments... [0.284008s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.014565s] Building query seed array... [1.01006s] Computing hash join... [0.241747s] Building seed filter... [0.003969s] Searching alignments... [0.304635s] Deallocating buffers... [4.4e-05s] Computing alignments... [129.5s] Deallocating reference... [4.9e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.018381s] Deallocating queries... [0.031209s] Loading query sequences... [2.2e-05s] Closing the input file... [3.7e-05s] Closing the output file... [0.001263s] Closing the database file... [6e-05s] Deallocating taxonomy... [9e-06s] Total time = 280.038s Reported 3765809 pairwise alignments, 3765809 HSPs. 3765809 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/73_R1_001.fastp-trim.202003182229.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/73_R1_001.fastp-trim.202003182229.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [6.9e-05s] #Target sequences to report alignments for: 1 Opening the input file... [0.007148s] Opening the output file... [0.00078s] Loading query sequences... [57.9123s] Masking queries... [65.7953s] Building query seed set... [0.239648s] Algorithm: Double-indexed Building query histograms... [1.58265s] Allocating buffers... [0.001033s] Loading reference sequences... [0.021136s] Masking reference... [0.032922s] Initializing temporary storage... [0.003257s] Building reference histograms... [0.007876s] Allocating buffers... [0.000434s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.01669s] Building query seed array... [0.874215s] Computing hash join... [0.237763s] Building seed filter... [0.004233s] Searching alignments... [0.347747s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.015573s] Building query seed array... [0.972633s] Computing hash join... [0.18271s] Building seed filter... [0.004524s] Searching alignments... [0.280309s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.016842s] Building query seed array... [1.0035s] Computing hash join... [0.208695s] Building seed filter... [0.00381s] Searching alignments... [0.23931s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013531s] Building query seed array... [0.869275s] Computing hash join... [0.210747s] Building seed filter... [0.004581s] Searching alignments... [0.248356s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.013868s] Building query seed array... [0.763937s] Computing hash join... [0.178976s] Building seed filter... [0.004324s] Searching alignments... [0.119868s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.0159s] Building query seed array... [0.867056s] Computing hash join... [0.163678s] Building seed filter... [0.004328s] Searching alignments... [0.131186s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.020229s] Building query seed array... [0.914636s] Computing hash join... [0.177488s] Building seed filter... [0.004645s] Searching alignments... [0.148461s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.01459s] Building query seed array... [0.753167s] Computing hash join... [0.172775s] Building seed filter... [0.002417s] Searching alignments... [0.106244s] Deallocating buffers... [4.4e-05s] Computing alignments... [114.015s] Deallocating reference... [6e-05s] Loading reference sequences... [9.1e-05s] Deallocating buffers... [0.013045s] Deallocating queries... [0.034467s] Loading query sequences... [2.3e-05s] Closing the input file... [3.9e-05s] Closing the output file... [0.000302s] Closing the database file... [2e-05s] Deallocating taxonomy... [9e-06s] Total time = 250.207s Reported 737151 pairwise alignments, 737151 HSPs. 737151 queries aligned. Generating checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/73_R2_001.fastp-trim.202003182229.fq.gz. Completed checksum for /gscratch/srlab/sam/data/C_bairdi/RNAseq/73_R2_001.fastp-trim.202003182229.fq.gz. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000142s] #Target sequences to report alignments for: 1 Opening the input file... [0.009131s] Opening the output file... [0.000371s] Loading query sequences... [56.9841s] Masking queries... [67.1318s] Building query seed set... [0.242731s] Algorithm: Double-indexed Building query histograms... [1.22516s] Allocating buffers... [0.001056s] Loading reference sequences... [0.02054s] Masking reference... [0.032126s] Initializing temporary storage... [0.005378s] Building reference histograms... [0.011298s] Allocating buffers... [0.000616s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.013114s] Building query seed array... [0.694192s] Computing hash join... [0.127719s] Building seed filter... [0.002264s] Searching alignments... [0.347941s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.015729s] Building query seed array... [0.780762s] Computing hash join... [0.118678s] Building seed filter... [0.001968s] Searching alignments... [0.277539s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.018061s] Building query seed array... [0.801307s] Computing hash join... [0.116618s] Building seed filter... [0.001945s] Searching alignments... [0.235284s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.013941s] Building query seed array... [0.718087s] Computing hash join... [0.118037s] Building seed filter... [0.002147s] Searching alignments... [0.226571s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.01436s] Building query seed array... [0.603621s] Computing hash join... [0.089436s] Building seed filter... [0.001828s] Searching alignments... [0.116931s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.014304s] Building query seed array... [0.686267s] Computing hash join... [0.095396s] Building seed filter... [0.001805s] Searching alignments... [0.129037s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.015491s] Building query seed array... [0.707459s] Computing hash join... [0.09614s] Building seed filter... [0.001988s] Searching alignments... [0.102438s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.012496s] Building query seed array... [0.604132s] Computing hash join... [0.092305s] Building seed filter... [0.002424s] Searching alignments... [0.10185s] Deallocating buffers... [4.8e-05s] Computing alignments... [115.209s] Deallocating reference... [6.3e-05s] Loading reference sequences... [0.000119s] Deallocating buffers... [0.0087s] Deallocating queries... [0.037705s] Loading query sequences... [2.2e-05s] Closing the input file... [4.6e-05s] Closing the output file... [0.000382s] Closing the database file... [5.9e-05s] Deallocating taxonomy... [5e-05s] Total time = 249.237s Reported 643452 pairwise alignments, 643452 HSPs. 643452 queries aligned. Logging program options... Finished logging system PATH