diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.096177s] Percentage range of top alignment score to report hits: 10 Opening the input file... [0.000129s] Opening the output file... [0.000523s] Loading query sequences... [0.060661s] Masking queries... [0.043236s] Building query seed set... [0.027891s] Algorithm: Double-indexed Building query histograms... [0.013442s] Allocating buffers... [0.000461s] Loading reference sequences... [4.04717s] Masking reference... [0.692554s] Initializing temporary storage... [0.002308s] Building reference histograms... [0.145908s] Allocating buffers... [0.000208s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.119237s] Building query seed array... [0.014166s] Computing hash join... [0.034399s] Building seed filter... [0.002323s] Searching alignments... [0.029216s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.147279s] Building query seed array... [0.01456s] Computing hash join... [0.021434s] Building seed filter... [0.002223s] Searching alignments... [0.022487s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.135623s] Building query seed array... [0.015969s] Computing hash join... [0.01914s] Building seed filter... [0.002289s] Searching alignments... [0.015569s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.09022s] Building query seed array... [0.011943s] Computing hash join... [0.022812s] Building seed filter... [0.00237s] Searching alignments... [0.020671s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.105063s] Building query seed array... [0.00811s] Computing hash join... [0.018443s] Building seed filter... [0.002264s] Searching alignments... [0.014489s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.109205s] Building query seed array... [0.008718s] Computing hash join... [0.016471s] Building seed filter... [0.002262s] Searching alignments... [0.017276s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.122961s] Building query seed array... [0.01582s] Computing hash join... [0.019317s] Building seed filter... [0.002456s] Searching alignments... [0.018326s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.102513s] Building query seed array... [0.014753s] Computing hash join... [0.023029s] Building seed filter... [0.002282s] Searching alignments... [0.015268s] Deallocating buffers... [0.001465s] Computing alignments... [0.424529s] Deallocating reference... [0.002602s] Loading reference sequences... [8.4e-05s] Deallocating buffers... [0.000291s] Deallocating queries... [0.000486s] Loading query sequences... [4.6e-05s] Closing the input file... [5.9e-05s] Closing the output file... [0.000329s] Closing the database file... [7.6e-05s] Deallocating taxonomy... [2.4e-05s] Total time = 6.94939s Reported 53465 pairwise alignments, 53485 HSPs. 3889 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [7.6e-05s] Percentage range of top alignment score to report hits: 10 Opening the input file... [2.9e-05s] Opening the output file... [0.000837s] Loading query sequences... [0.019894s] Masking queries... [0.023151s] Building query seed set... [0.022768s] Algorithm: Double-indexed Building query histograms... [0.005523s] Allocating buffers... [0.000346s] Loading reference sequences... [0.34854s] Masking reference... [0.701301s] Initializing temporary storage... [0.004817s] Building reference histograms... [0.146769s] Allocating buffers... [0.000227s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.10791s] Building query seed array... [0.004419s] Computing hash join... [0.02182s] Building seed filter... [0.002272s] Searching alignments... [0.01502s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.111557s] Building query seed array... [0.005059s] Computing hash join... [0.022328s] Building seed filter... [0.00225s] Searching alignments... [0.012278s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.121554s] Building query seed array... [0.007929s] Computing hash join... [0.026008s] Building seed filter... [0.002584s] Searching alignments... [0.008252s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.094739s] Building query seed array... [0.004762s] Computing hash join... [0.022487s] Building seed filter... [0.004256s] Searching alignments... [0.013382s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.094414s] Building query seed array... [0.003768s] Computing hash join... [0.018857s] Building seed filter... [0.002674s] Searching alignments... [0.012785s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.115799s] Building query seed array... [0.006847s] Computing hash join... [0.020846s] Building seed filter... [0.002332s] Searching alignments... [0.008778s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.112451s] Building query seed array... [0.004916s] Computing hash join... [0.01877s] Building seed filter... [0.002446s] Searching alignments... [0.009532s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.090756s] Building query seed array... [0.00873s] Computing hash join... [0.026961s] Building seed filter... [0.00222s] Searching alignments... [0.008363s] Deallocating buffers... [0.001422s] Computing alignments... [0.272967s] Deallocating reference... [0.002981s] Loading reference sequences... [9.9e-05s] Deallocating buffers... [0.000825s] Deallocating queries... [0.00069s] Loading query sequences... [6.1e-05s] Closing the input file... [6.3e-05s] Closing the output file... [0.001274s] Closing the database file... [6.8e-05s] Deallocating taxonomy... [3.2e-05s] Total time = 2.7437s Reported 35220 pairwise alignments, 35220 HSPs. 2482 queries aligned. Logging program options... Finished logging program options. Logging system PATH. Finished logging system PATH