Sample	Filename	File type	Encoding	Total Sequences	Sequences flagged as poor quality	Sequence length	%GC	total_deduplicated_percentage	avg_sequence_length	basic_statistics	per_base_sequence_quality	per_tile_sequence_quality	per_sequence_quality_scores	per_base_sequence_content	per_sequence_gc_content	per_base_n_content	sequence_length_distribution	sequence_duplication_levels	overrepresented_sequences	adapter_content
CH01-06_S1_L001_R1_001	CH01-06_S1_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1161121.0	0.0	35-76	33.0	96.49632171162817	75.69813309723965	pass	pass	pass	pass	fail	pass	pass	warn	pass	pass	fail
CH01-06_S1_L001_R2_001	CH01-06_S1_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1161121.0	0.0	38-76	34.0	96.81645699520493	75.79476040826064	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH01-14_S2_L001_R1_001	CH01-14_S2_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	937995.0	0.0	65-76	34.0	96.95362262924462	75.67539165987026	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH01-14_S2_L001_R2_001	CH01-14_S2_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	937995.0	0.0	38-76	34.0	97.45570759162985	75.79961940095629	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH01-22_S3_L001_R1_001	CH01-22_S3_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1097494.0	0.0	35-76	32.0	96.35461889671268	75.69815598080719	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH01-22_S3_L001_R2_001	CH01-22_S3_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1097494.0	0.0	35-76	33.0	96.75392691528025	75.791675398681	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH01-38_S4_L001_R1_001	CH01-38_S4_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1743736.0	0.0	38-76	33.0	97.31320694540987	75.68360290777962	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH01-38_S4_L001_R2_001	CH01-38_S4_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1743736.0	0.0	38-76	34.0	97.6246371080555	75.793816265765	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH03-04_S5_L001_R1_001	CH03-04_S5_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1700890.0	0.0	35-76	32.0	95.0510043318049	75.72287567097226	pass	pass	pass	pass	fail	warn	pass	warn	pass	warn	fail
CH03-04_S5_L001_R2_001	CH03-04_S5_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1700890.0	0.0	35-76	32.0	95.45094576374343	75.78903515218504	pass	pass	warn	pass	fail	warn	pass	warn	pass	warn	fail
CH03-15_S6_L001_R1_001	CH03-15_S6_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	707700.0	0.0	38-76	31.0	96.09047395926133	75.71977532852904	pass	pass	pass	pass	fail	warn	pass	warn	pass	warn	fail
CH03-15_S6_L001_R2_001	CH03-15_S6_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	707700.0	0.0	35-76	31.0	96.57646278773032	75.7911445527766	pass	pass	warn	pass	fail	warn	pass	warn	pass	warn	fail
CH03-33_S7_L001_R1_001	CH03-33_S7_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1638913.0	0.0	38-76	33.0	95.50173255192334	75.70999558853947	pass	pass	pass	pass	fail	pass	pass	warn	pass	pass	fail
CH03-33_S7_L001_R2_001	CH03-33_S7_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1638913.0	0.0	60-76	33.0	95.73550895372694	75.7924416976374	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH05-01_S8_L001_R1_001	CH05-01_S8_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1356564.0	0.0	35-76	34.0	96.35300907261811	75.69735449267414	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH05-01_S8_L001_R2_001	CH05-01_S8_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1356564.0	0.0	35-76	34.0	96.85121656218337	75.7885518117833	pass	pass	warn	pass	fail	pass	pass	warn	pass	warn	fail
CH05-06_S9_L001_R1_001	CH05-06_S9_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	670053.0	0.0	35-76	30.0	94.22174457586242	75.71390322855058	pass	pass	pass	pass	warn	warn	pass	warn	pass	warn	fail
CH05-06_S9_L001_R2_001	CH05-06_S9_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	670053.0	0.0	38-76	30.0	94.87398785238875	75.7951027754521	pass	pass	warn	pass	fail	warn	pass	warn	pass	warn	fail
CH05-21_S10_L001_R1_001	CH05-21_S10_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1527307.0	0.0	35-76	33.0	95.727618116285	75.69774642557128	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH05-21_S10_L001_R2_001	CH05-21_S10_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1527307.0	0.0	35-76	33.0	96.26424689551261	75.78719929915859	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH05-24_S11_L001_R1_001	CH05-24_S11_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	960973.0	0.0	60-76	35.0	97.8440391073039	75.6748535078509	pass	pass	pass	pass	fail	pass	pass	warn	pass	pass	fail
CH05-24_S11_L001_R2_001	CH05-24_S11_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	960973.0	0.0	64-76	36.0	98.06121497835265	75.78732701126879	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH07-06_S12_L001_R1_001	CH07-06_S12_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1577996.0	0.0	35-76	32.0	95.96121550537326	75.70646059939315	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH07-06_S12_L001_R2_001	CH07-06_S12_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1577996.0	0.0	35-76	32.0	96.2966083980501	75.79719783827082	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH07-11_S13_L001_R1_001	CH07-11_S13_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1033666.0	0.0	35-76	30.0	93.61103003783367	75.70626004918417	pass	pass	pass	pass	warn	warn	pass	warn	pass	warn	fail
CH07-11_S13_L001_R2_001	CH07-11_S13_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1033666.0	0.0	35-76	30.0	94.2187471694232	75.80446682003665	pass	pass	warn	pass	fail	warn	pass	warn	pass	pass	fail
CH07-24_S14_L001_R1_001	CH07-24_S14_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	983655.0	0.0	35-76	29.0	91.78737305857591	75.69409396587218	pass	pass	pass	pass	warn	warn	pass	warn	pass	fail	fail
CH07-24_S14_L001_R2_001	CH07-24_S14_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	983655.0	0.0	35-76	29.0	93.14184559858583	75.79955167208016	pass	pass	warn	pass	fail	pass	pass	warn	pass	warn	fail
CH09-02_S15_L001_R1_001	CH09-02_S15_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	2110937.0	0.0	38-76	34.0	94.95585941762921	75.67577620743774	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH09-02_S15_L001_R2_001	CH09-02_S15_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	2110937.0	0.0	35-76	34.0	95.62562893350396	75.79432972182495	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH09-13_S16_L001_R1_001	CH09-13_S16_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	677838.0	0.0	35-76	31.0	85.98355926262859	75.6487877634479	pass	pass	pass	pass	fail	warn	pass	warn	pass	warn	fail
CH09-13_S16_L001_R2_001	CH09-13_S16_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	677838.0	0.0	35-76	32.0	87.97465710140241	75.81337576235029	pass	pass	warn	pass	fail	warn	pass	warn	pass	warn	fail
CH09-28_S17_L001_R1_001	CH09-28_S17_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	2042512.0	0.0	64-76	33.0	96.82356141252485	75.69343729681881	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH09-28_S17_L001_R2_001	CH09-28_S17_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	2042512.0	0.0	64-76	33.0	96.99997350910805	75.80084768167825	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH10-01_S18_L001_R1_001	CH10-01_S18_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	2185138.0	0.0	35-76	32.0	96.22443184798428	75.69766989544826	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH10-01_S18_L001_R2_001	CH10-01_S18_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	2185138.0	0.0	35-76	33.0	96.42732304442033	75.800734324331	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail
CH10-08_S19_L001_R1_001	CH10-08_S19_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1527052.0	0.0	35-76	32.0	96.0754321723363	75.71908618697988	pass	pass	pass	pass	fail	warn	pass	warn	pass	warn	fail
CH10-08_S19_L001_R2_001	CH10-08_S19_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	1527052.0	0.0	35-76	32.0	96.59993597474144	75.78360003457642	pass	pass	warn	pass	fail	warn	pass	warn	pass	warn	fail
CH10-11_S20_L001_R1_001	CH10-11_S20_L001_R1_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	2853418.0	0.0	38-76	32.0	96.75269822524587	75.70353695112318	pass	pass	pass	pass	fail	pass	pass	warn	pass	warn	fail
CH10-11_S20_L001_R2_001	CH10-11_S20_L001_R2_001.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	2853418.0	0.0	63-76	32.0	96.99625880176671	75.80530262302965	pass	pass	warn	pass	fail	pass	pass	warn	pass	pass	fail