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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2020-12-07, 00:21 based on data in: /gscratch/scrubbed/samwhite/outputs/20201206_cgig_fastp-10bp-5-3-prime_ploidy-pH-wgbs

        General Statistics

        Showing 24/24 rows and 4/6 columns.
        Sample Name% DuplicationGC content% PF% Adapter
        zr3644_10_R1
        10.8%
        17.8%
        97.6%
        32.2%
        zr3644_11_R1
        10.6%
        17.8%
        97.6%
        32.2%
        zr3644_12_R1
        10.3%
        17.1%
        97.4%
        32.5%
        zr3644_13_R1
        10.9%
        17.6%
        97.8%
        29.9%
        zr3644_14_R1
        9.7%
        17.7%
        97.7%
        31.6%
        zr3644_15_R1
        10.7%
        17.6%
        97.8%
        31.1%
        zr3644_16_R1
        11.0%
        17.7%
        96.6%
        36.0%
        zr3644_17_R1
        11.1%
        17.9%
        97.5%
        32.4%
        zr3644_18_R1
        10.0%
        17.8%
        97.5%
        32.3%
        zr3644_19_R1
        9.5%
        17.7%
        97.4%
        31.3%
        zr3644_1_R1
        10.9%
        17.7%
        96.9%
        33.9%
        zr3644_20_R1
        10.4%
        17.8%
        97.9%
        29.5%
        zr3644_21_R1
        10.5%
        17.7%
        97.7%
        30.1%
        zr3644_22_R1
        10.5%
        17.8%
        97.5%
        31.4%
        zr3644_23_R1
        10.5%
        17.8%
        97.4%
        32.9%
        zr3644_24_R1
        10.7%
        17.8%
        97.8%
        31.4%
        zr3644_2_R1
        11.3%
        17.6%
        97.8%
        28.4%
        zr3644_3_R1
        9.3%
        17.7%
        97.6%
        30.9%
        zr3644_4_R1
        10.6%
        17.5%
        97.7%
        31.7%
        zr3644_5_R1
        9.7%
        17.6%
        97.7%
        30.7%
        zr3644_6_R1
        11.0%
        17.6%
        97.4%
        31.3%
        zr3644_7_R1
        9.9%
        17.6%
        97.7%
        30.3%
        zr3644_8_R1
        9.7%
        17.8%
        97.5%
        31.9%
        zr3644_9_R1
        11.3%
        17.9%
        96.4%
        36.9%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)

        Filtered Reads

        Filtering statistics of sampled reads.

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        Duplication Rates

        Duplication rates of sampled reads.

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        Insert Sizes

        Insert size estimation of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

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        GC Content

        Average GC content over each base of all reads.

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        N content

        Average N content over each base of all reads.

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        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.