A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
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Report generated on 2020-12-07, 00:21 based on data in:
/gscratch/scrubbed/samwhite/outputs/20201206_cgig_fastp-10bp-5-3-prime_ploidy-pH-wgbs
General Statistics
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fastp
fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)
Filtered Reads
Filtering statistics of sampled reads.
Number of Reads
Percentages
Created with Highcharts 5.0.6 # Reads Chart context menu Export Plot Fastp: Filtered Reads Passed Filter Low Quality Too Many N Too short zr3644_10_R1 zr3644_11_R1 zr3644_12_R1 zr3644_13_R1 zr3644_14_R1 zr3644_15_R1 zr3644_16_R1 zr3644_17_R1 zr3644_18_R1 zr3644_19_R1 zr3644_1_R1 zr3644_20_R1 zr3644_21_R1 zr3644_22_R1 zr3644_23_R1 zr3644_24_R1 zr3644_2_R1 zr3644_3_R1 zr3644_4_R1 zr3644_5_R1 zr3644_6_R1 zr3644_7_R1 zr3644_8_R1 zr3644_9_R1 0 20M 40M 60M 80M 100M 120M 140M 160M 180M Created with MultiQC
Duplication Rates
Duplication rates of sampled reads.
Y-Limits: on
Created with Highcharts 5.0.6 Duplication level Read percent Chart context menu Export Plot Fastp: Duplication Rate 2 4 6 8 10 12 14 16 18 20 22 24 26 28 30 0% 20% 40% 60% 80% 100% Created with MultiQC
Insert Sizes
Insert size estimation of sampled reads.
Y-Limits: on
Created with Highcharts 5.0.6 Insert size Read percent Chart context menu Export Plot Fastp: Insert Size Distribution 0 25 50 75 100 125 150 175 200 0% 0.5% 1% 1.5% 2% 2.5% 3% Created with MultiQC
Sequence Quality
Average sequencing quality over each base of all reads.
Y-Limits: on
Read 1: Before filtering
Read 1: After filtering
Read 2: Before filtering
Read 2: After filtering
Created with Highcharts 5.0.6 Read Position R1 Before filtering: Sequence Quality Chart context menu Export Plot Fastp: Sequence Quality 0 10 20 30 40 50 60 70 80 90 100 110 120 130 0 5 10 15 20 25 30 35 40 Created with MultiQC
GC Content
Average GC content over each base of all reads.
Y-Limits: on
Read 1: Before filtering
Read 1: After filtering
Read 2: Before filtering
Read 2: After filtering
Created with Highcharts 5.0.6 Read Position R1 Before filtering: Base Content Percent Chart context menu Export Plot Fastp: Read GC Content 0 10 20 30 40 50 60 70 80 90 100 110 120 130 0% 20% 40% 60% 80% 100% Created with MultiQC
N content
Average N content over each base of all reads.
Y-Limits: on
Read 1: Before filtering
Read 1: After filtering
Read 2: Before filtering
Read 2: After filtering
Created with Highcharts 5.0.6 Read Position R1 Before filtering: Base Content Percent Chart context menu Export Plot Fastp: Read N Content 0 10 20 30 40 50 60 70 80 90 100 110 120 130 0% 1% 2% 3% 4% 5% 6% Created with MultiQC
