Loading report..

Highlight Samples

Regex mode off

    Rename Samples

    Click here for bulk input.

    Paste two columns of a tab-delimited table here (eg. from Excel).

    First column should be the old name, second column the new name.

    Regex mode off

      Show / Hide Samples

      Regex mode off

        Export Plots

        px
        px
        X

        Download the raw data used to create the plots in this report below:

        Note that additional data was saved in multiqc_data when this report was generated.

        Choose Plots

        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Save Settings

        You can save the toolbox settings for this report to the browser.

        Load Settings

        Choose a saved report profile from the dropdown box below:

        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2020-12-02, 14:19 based on data in: /gscratch/scrubbed/samwhite/outputs/20201202_cgig_fastp-10bp-5-3-prime_ronit-ploidy-wgbs

        General Statistics

        Showing 10/10 rows and 4/6 columns.
        Sample Name% DuplicationGC content% PF% Adapter
        zr3534_10_R1
        17.1%
        18.0%
        98.1%
        32.4%
        zr3534_1_R1
        17.4%
        17.9%
        98.1%
        31.9%
        zr3534_2_R1
        16.9%
        17.9%
        98.2%
        31.5%
        zr3534_3_R1
        16.7%
        17.8%
        98.4%
        29.1%
        zr3534_4_R1
        16.7%
        17.8%
        98.2%
        32.0%
        zr3534_5_R1
        17.3%
        17.8%
        98.0%
        32.3%
        zr3534_6_R1
        16.9%
        17.8%
        98.1%
        30.5%
        zr3534_7_R1
        15.5%
        17.7%
        98.2%
        31.2%
        zr3534_8_R1
        19.0%
        17.7%
        98.3%
        33.8%
        zr3534_9_R1
        16.4%
        18.0%
        98.1%
        32.4%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)

        Filtered Reads

        Filtering statistics of sampled reads.

        loading..

        Duplication Rates

        Duplication rates of sampled reads.

        loading..

        Insert Sizes

        Insert size estimation of sampled reads.

        loading..

        Sequence Quality

        Average sequencing quality over each base of all reads.

        loading..

        GC Content

        Average GC content over each base of all reads.

        loading..

        N content

        Average N content over each base of all reads.

        loading..

        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.