FastQCFastQC Report
Tue 10 Nov 2020
zr3534_9_R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamezr3534_9_R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75217875
Sequences flagged as poor quality0
Sequence length20-135
%GC18

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCCACGAGACCTTATTGGCCATCTCGTATGCCGTCTTCTGCTTGAAA2783720.3700875622981904TruSeq Adapter, Index 20 (96% over 29bp)
GAGCCCACGAGACCTTATTGGCCATCGCGTATGCCGTCTTCTGCTTGAAA1857690.24697453896430865RNA PCR Primer, Index 20 (96% over 29bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)