FastQCFastQC Report
Tue 10 Nov 2020
zr3534_2_R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamezr3534_2_R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76804380
Sequences flagged as poor quality0
Sequence length20-135
%GC18

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCCACGAGACGATCGTCGCGATCTCGTATGCCGTCTTCTGCTTGAAA1584870.20635151276528763Illumina PCR Primer Index 1 (96% over 29bp)
GAGCCCACGAGACGATCGTCGCGATCGCGTATGCCGTCTTCTGCTTGAAA929630.12103866993002223Illumina Paired End PCR Primer 2 (96% over 26bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)