Sample paired_total paired_aligned_none paired_aligned_one paired_aligned_multi paired_aligned_discord_one unpaired_total unpaired_aligned_none unpaired_aligned_one unpaired_aligned_multi overall_alignment_rate Pool26_16_hisat2.err 25291362 2737434 20567044 1561723 425161 5474868 3805293 1467835 201740 92.48 Pool26_8_hisat2.err 28055070 2690221 23570369 1532495 261985 5380442 4003103 1216131 161208 92.87 Pool32_16_hisat2.err 20329409 2234518 16733610 1025961 335320 4469036 3118502 1208415 142119 92.33 Pool32_8_hisat2.err 26875465 2844314 21904725 1499630 626796 5688628 3543507 1876370 268751 93.41