[M::mm_idx_gen::0.829*1.00] collected minimizers [M::mm_idx_gen::1.100*1.47] sorted minimizers [M::main::1.100*1.47] loaded/built the index for 2431 target sequence(s) [M::mm_mapopt_update::1.193*1.44] mid_occ = 197 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 2431 [M::mm_idx_stat::1.249*1.42] distinct minimizers: 1824021 (78.05% are singletons); average occurrences: 2.097; average spacing: 4.875 [M::worker_pipeline::1.839*1.90] mapped 280 sequences [M::main] Version: 2.17-r941 [M::main] CMD: /gscratch/srlab/programs/minimap2-2.17_x64-linux/minimap2 -ax map-ont /gscratch/srlab/sam/data/C_bairdi/genomes/cbai_genome_v1.01.fasta 20201013_201002558-2729-Q7_Aquifex_sp_megan.fq [M::main] Real time: 1.868 sec; CPU: 3.525 sec; Peak RSS: 0.190 GB Generating checksum for 20201013_201002558-2729-Q7_Aquifex_sp_megan.fq Finished generating checksum for 20201013_201002558-2729-Q7_Aquifex_sp_megan.fq [M::mm_idx_gen::0.806*1.01] collected minimizers [M::mm_idx_gen::1.056*1.46] sorted minimizers [M::main::1.057*1.46] loaded/built the index for 2431 target sequence(s) [M::mm_mapopt_update::1.150*1.42] mid_occ = 197 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 2431 [M::mm_idx_stat::1.210*1.40] distinct minimizers: 1824021 (78.05% are singletons); average occurrences: 2.097; average spacing: 4.875 [M::worker_pipeline::5.390*2.58] mapped 1850 sequences [M::main] Version: 2.17-r941 [M::main] CMD: /gscratch/srlab/programs/minimap2-2.17_x64-linux/minimap2 -ax map-ont /gscratch/srlab/sam/data/C_bairdi/genomes/cbai_genome_v1.01.fasta 20201013_201002558-2729-Q7_Arthropoda_megan.fq [M::main] Real time: 5.416 sec; CPU: 13.947 sec; Peak RSS: 0.203 GB [bam_sort_core] merging from 0 files and 27 in-memory blocks... Generating checksum for 20201013_201002558-2729-Q7_Arthropoda_megan.fq Finished generating checksum for 20201013_201002558-2729-Q7_Arthropoda_megan.fq [M::mm_idx_gen::0.816*1.01] collected minimizers [M::mm_idx_gen::1.055*1.43] sorted minimizers [M::main::1.056*1.43] loaded/built the index for 2431 target sequence(s) [M::mm_mapopt_update::1.147*1.40] mid_occ = 197 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 2431 [M::mm_idx_stat::1.210*1.38] distinct minimizers: 1824021 (78.05% are singletons); average occurrences: 2.097; average spacing: 4.875 [M::worker_pipeline::5.145*2.58] mapped 1554 sequences [M::main] Version: 2.17-r941 [M::main] CMD: /gscratch/srlab/programs/minimap2-2.17_x64-linux/minimap2 -ax map-ont /gscratch/srlab/sam/data/C_bairdi/genomes/cbai_genome_v1.01.fasta 20201013_201002558-2729-Q7_Enterospora_canceri_megan.fq [M::main] Real time: 5.180 sec; CPU: 13.285 sec; Peak RSS: 0.205 GB [bam_sort_core] merging from 0 files and 27 in-memory blocks... Generating checksum for 20201013_201002558-2729-Q7_Enterospora_canceri_megan.fq Finished generating checksum for 20201013_201002558-2729-Q7_Enterospora_canceri_megan.fq [M::mm_idx_gen::0.797*1.01] collected minimizers [M::mm_idx_gen::1.044*1.45] sorted minimizers [M::main::1.044*1.45] loaded/built the index for 2431 target sequence(s) [M::mm_mapopt_update::1.137*1.41] mid_occ = 197 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 2431 [M::mm_idx_stat::1.196*1.39] distinct minimizers: 1824021 (78.05% are singletons); average occurrences: 2.097; average spacing: 4.875 [M::worker_pipeline::1.215*1.41] mapped 6 sequences [M::main] Version: 2.17-r941 [M::main] CMD: /gscratch/srlab/programs/minimap2-2.17_x64-linux/minimap2 -ax map-ont /gscratch/srlab/sam/data/C_bairdi/genomes/cbai_genome_v1.01.fasta 20201013_201002558-2729-Q7_Sar_megan.fq [M::main] Real time: 1.246 sec; CPU: 1.739 sec; Peak RSS: 0.161 GB Generating checksum for 20201013_201002558-2729-Q7_Sar_megan.fq Finished generating checksum for 20201013_201002558-2729-Q7_Sar_megan.fq [M::mm_idx_gen::0.802*1.01] collected minimizers [M::mm_idx_gen::1.055*1.45] sorted minimizers [M::main::1.055*1.45] loaded/built the index for 2431 target sequence(s) [M::mm_mapopt_update::1.148*1.41] mid_occ = 197 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 2431 [M::mm_idx_stat::1.207*1.39] distinct minimizers: 1824021 (78.05% are singletons); average occurrences: 2.097; average spacing: 4.875 [M::worker_pipeline::8.123*2.54] mapped 461 sequences [M::main] Version: 2.17-r941 [M::main] CMD: /gscratch/srlab/programs/minimap2-2.17_x64-linux/minimap2 -ax map-ont /gscratch/srlab/sam/data/C_bairdi/genomes/cbai_genome_v1.01.fasta 20201013_6129-403-26-Q7_Alveolata_megan.fq [M::main] Real time: 8.179 sec; CPU: 20.727 sec; Peak RSS: 0.996 GB [bam_sort_core] merging from 0 files and 27 in-memory blocks... Generating checksum for 20201013_6129-403-26-Q7_Alveolata_megan.fq Finished generating checksum for 20201013_6129-403-26-Q7_Alveolata_megan.fq [M::mm_idx_gen::0.652*1.01] collected minimizers [M::mm_idx_gen::0.890*1.50] sorted minimizers [M::main::0.890*1.50] loaded/built the index for 2431 target sequence(s) [M::mm_mapopt_update::0.984*1.45] mid_occ = 197 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 2431 [M::mm_idx_stat::1.043*1.43] distinct minimizers: 1824021 (78.05% are singletons); average occurrences: 2.097; average spacing: 4.875 [M::worker_pipeline::21.764*2.89] mapped 4187 sequences [M::main] Version: 2.17-r941 [M::main] CMD: /gscratch/srlab/programs/minimap2-2.17_x64-linux/minimap2 -ax map-ont /gscratch/srlab/sam/data/C_bairdi/genomes/cbai_genome_v1.01.fasta 20201013_6129-403-26-Q7_Aquifex_sp_megan.fq [M::main] Real time: 21.795 sec; CPU: 62.925 sec; Peak RSS: 0.464 GB [bam_sort_core] merging from 0 files and 27 in-memory blocks... Generating checksum for 20201013_6129-403-26-Q7_Aquifex_sp_megan.fq Finished generating checksum for 20201013_6129-403-26-Q7_Aquifex_sp_megan.fq [M::mm_idx_gen::0.792*1.00] collected minimizers [M::mm_idx_gen::1.036*1.45] sorted minimizers [M::main::1.036*1.45] loaded/built the index for 2431 target sequence(s) [M::mm_mapopt_update::1.127*1.41] mid_occ = 197 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 2431 [M::mm_idx_stat::1.188*1.39] distinct minimizers: 1824021 (78.05% are singletons); average occurrences: 2.097; average spacing: 4.875 [M::worker_pipeline::161.968*2.96] mapped 29649 sequences [M::main] Version: 2.17-r941 [M::main] CMD: /gscratch/srlab/programs/minimap2-2.17_x64-linux/minimap2 -ax map-ont /gscratch/srlab/sam/data/C_bairdi/genomes/cbai_genome_v1.01.fasta 20201013_6129-403-26-Q7_Arthropoda_megan.fq [M::main] Real time: 162.010 sec; CPU: 479.721 sec; Peak RSS: 1.334 GB [bam_sort_core] merging from 0 files and 27 in-memory blocks... Generating checksum for 20201013_6129-403-26-Q7_Arthropoda_megan.fq Finished generating checksum for 20201013_6129-403-26-Q7_Arthropoda_megan.fq [M::mm_idx_gen::0.650*1.00] collected minimizers [M::mm_idx_gen::0.900*1.52] sorted minimizers [M::main::0.901*1.52] loaded/built the index for 2431 target sequence(s) [M::mm_mapopt_update::0.992*1.47] mid_occ = 197 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 2431 [M::mm_idx_stat::1.055*1.44] distinct minimizers: 1824021 (78.05% are singletons); average occurrences: 2.097; average spacing: 4.875 [M::worker_pipeline::100.119*2.95] mapped 18111 sequences [M::main] Version: 2.17-r941 [M::main] CMD: /gscratch/srlab/programs/minimap2-2.17_x64-linux/minimap2 -ax map-ont /gscratch/srlab/sam/data/C_bairdi/genomes/cbai_genome_v1.01.fasta 20201013_6129-403-26-Q7_Enterospora_canceri_megan.fq [M::main] Real time: 100.178 sec; CPU: 295.844 sec; Peak RSS: 0.980 GB [bam_sort_core] merging from 0 files and 27 in-memory blocks... Generating checksum for 20201013_6129-403-26-Q7_Enterospora_canceri_megan.fq Finished generating checksum for 20201013_6129-403-26-Q7_Enterospora_canceri_megan.fq