diamond v2.0.4.142 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 28
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Opening the database...  [0.346s]
Percentage range of top alignment score to report hits: 5
Reference = /gscratch/srlab/blastdbs/ncbi-nr-20190925/nr.dmnd
Sequences = 221150606
Letters = 80477796956
Block size = 8000000000
Opening the input file...  [0.058s]
Opening the output file...  [0s]
Loading query sequences...  [12.566s]
Masking queries...  [5.22s]
Building query seed set...  [0.076s]
Algorithm: Double-indexed
Building query histograms...  [1.652s]
Allocating buffers...  [0s]
Loading reference sequences...  [23.692s]
Masking reference...  [19.608s]
Initializing temporary storage...  [0.023s]
Building reference histograms...  [7.274s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/11, shape 1/2.
Building reference seed array...  [6.572s]
Building query seed array...  [1.122s]
Computing hash join...  [10.533s]
Building seed filter...  [0.59s]
Searching alignments...  [16.278s]
Processing query block 1, reference block 1/11, shape 2/2.
Building reference seed array...  [6.011s]
Building query seed array...  [1.065s]
Computing hash join...  [10.51s]
Building seed filter...  [0.53s]
Searching alignments...  [15.974s]
Deallocating buffers...  [0.21s]
Clearing query masking...  [0.449s]
Opening temporary output file...  [0.001s]
Computing alignments...  [72.386s]
Deallocating reference...  [0.062s]
Loading reference sequences...  [16.467s]
Masking reference...  [19.739s]
Initializing temporary storage...  [0.011s]
Building reference histograms...  [7.545s]
Allocating buffers...  [0s]
Processing query block 1, reference block 2/11, shape 1/2.
Building reference seed array...  [6.629s]
Building query seed array...  [1.075s]
Computing hash join...  [10.562s]
Building seed filter...  [0.518s]
Searching alignments...  [15.202s]
Processing query block 1, reference block 2/11, shape 2/2.
Building reference seed array...  [6.014s]
Building query seed array...  [1.068s]
Computing hash join...  [10.474s]
Building seed filter...  [0.513s]
Searching alignments...  [14.873s]
Deallocating buffers...  [0.208s]
Clearing query masking...  [0.434s]
Opening temporary output file...  [0.001s]
Computing alignments...  [65.85s]
Deallocating reference...  [0.043s]
Loading reference sequences...  [19.049s]
Masking reference...  [19.643s]
Initializing temporary storage...  [0.011s]
Building reference histograms...  [7.125s]
Allocating buffers...  [0s]
Processing query block 1, reference block 3/11, shape 1/2.
Building reference seed array...  [6.634s]
Building query seed array...  [1.156s]
Computing hash join...  [10.516s]
Building seed filter...  [0.504s]
Searching alignments...  [15.184s]
Processing query block 1, reference block 3/11, shape 2/2.
Building reference seed array...  [6.036s]
Building query seed array...  [1.072s]
Computing hash join...  [10.403s]
Building seed filter...  [0.512s]
Searching alignments...  [14.949s]
Deallocating buffers...  [0.213s]
Clearing query masking...  [0.456s]
Opening temporary output file...  [0.001s]
Computing alignments...  [64.41s]
Deallocating reference...  [0.053s]
Loading reference sequences...  [19.189s]
Masking reference...  [19.527s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.595s]
Allocating buffers...  [0s]
Processing query block 1, reference block 4/11, shape 1/2.
Building reference seed array...  [6.613s]
Building query seed array...  [1.08s]
Computing hash join...  [10.46s]
Building seed filter...  [0.526s]
Searching alignments...  [15.401s]
Processing query block 1, reference block 4/11, shape 2/2.
Building reference seed array...  [6.09s]
Building query seed array...  [1.083s]
Computing hash join...  [10.424s]
Building seed filter...  [0.527s]
Searching alignments...  [15.171s]
Deallocating buffers...  [0.209s]
Clearing query masking...  [0.459s]
Opening temporary output file...  [0.001s]
Computing alignments...  [85.132s]
Deallocating reference...  [0.055s]
Loading reference sequences...  [17.866s]
Masking reference...  [18.61s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.061s]
Allocating buffers...  [0s]
Processing query block 1, reference block 5/11, shape 1/2.
Building reference seed array...  [6.508s]
Building query seed array...  [1.071s]
Computing hash join...  [10.619s]
Building seed filter...  [0.514s]
Searching alignments...  [15.492s]
Processing query block 1, reference block 5/11, shape 2/2.
Building reference seed array...  [6.311s]
Building query seed array...  [1.142s]
Computing hash join...  [10.441s]
Building seed filter...  [0.516s]
Searching alignments...  [15.071s]
Deallocating buffers...  [0.213s]
Clearing query masking...  [0.457s]
Opening temporary output file...  [0.001s]
Computing alignments...  [71.531s]
Deallocating reference...  [0.043s]
Loading reference sequences...  [17.851s]
Masking reference...  [19.508s]
Initializing temporary storage...  [0.549s]
Building reference histograms...  [7.542s]
Allocating buffers...  [0s]
Processing query block 1, reference block 6/11, shape 1/2.
Building reference seed array...  [6.542s]
Building query seed array...  [1.076s]
Computing hash join...  [10.474s]
Building seed filter...  [0.505s]
Searching alignments...  [15.051s]
Processing query block 1, reference block 6/11, shape 2/2.
Building reference seed array...  [5.973s]
Building query seed array...  [1.072s]
Computing hash join...  [10.364s]
Building seed filter...  [0.501s]
Searching alignments...  [14.68s]
Deallocating buffers...  [0.205s]
Clearing query masking...  [0.439s]
Opening temporary output file...  [0.001s]
Computing alignments...  [70.995s]
Deallocating reference...  [0.05s]
Loading reference sequences...  [16.904s]
Masking reference...  [19.586s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.126s]
Allocating buffers...  [0s]
Processing query block 1, reference block 7/11, shape 1/2.
Building reference seed array...  [6.577s]
Building query seed array...  [1.133s]
Computing hash join...  [10.582s]
Building seed filter...  [0.541s]
Searching alignments...  [15.54s]
Processing query block 1, reference block 7/11, shape 2/2.
Building reference seed array...  [6.052s]
Building query seed array...  [1.08s]
Computing hash join...  [10.537s]
Building seed filter...  [0.522s]
Searching alignments...  [15.356s]
Deallocating buffers...  [0.213s]
Clearing query masking...  [0.497s]
Opening temporary output file...  [0.001s]
Computing alignments...  [61.79s]
Deallocating reference...  [0.044s]
Loading reference sequences...  [17.065s]
Masking reference...  [19.613s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.478s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/11, shape 1/2.
Building reference seed array...  [6.639s]
Building query seed array...  [1.152s]
Computing hash join...  [10.54s]
Building seed filter...  [0.511s]
Searching alignments...  [15.103s]
Processing query block 1, reference block 8/11, shape 2/2.
Building reference seed array...  [6.048s]
Building query seed array...  [1.068s]
Computing hash join...  [10.423s]
Building seed filter...  [0.517s]
Searching alignments...  [15.008s]
Deallocating buffers...  [0.205s]
Clearing query masking...  [0.437s]
Opening temporary output file...  [0.008s]
Computing alignments...  [59.438s]
Deallocating reference...  [0.044s]
Loading reference sequences...  [16.112s]
Masking reference...  [19.507s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [7.039s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/11, shape 1/2.
Building reference seed array...  [6.52s]
Building query seed array...  [1.079s]
Computing hash join...  [10.534s]
Building seed filter...  [0.546s]
Searching alignments...  [15.495s]
Processing query block 1, reference block 9/11, shape 2/2.
Building reference seed array...  [6.177s]
Building query seed array...  [1.147s]
Computing hash join...  [10.467s]
Building seed filter...  [0.523s]
Searching alignments...  [15.172s]
Deallocating buffers...  [0.231s]
Clearing query masking...  [0.497s]
Opening temporary output file...  [0.001s]
Computing alignments...  [81.257s]
Deallocating reference...  [0.044s]
Loading reference sequences...  [17.608s]
Masking reference...  [19.635s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [7.55s]
Allocating buffers...  [0s]
Processing query block 1, reference block 10/11, shape 1/2.
Building reference seed array...  [6.573s]
Building query seed array...  [1.143s]
Computing hash join...  [10.568s]
Building seed filter...  [0.507s]
Searching alignments...  [15.079s]
Processing query block 1, reference block 10/11, shape 2/2.
Building reference seed array...  [5.989s]
Building query seed array...  [1.065s]
Computing hash join...  [10.442s]
Building seed filter...  [0.512s]
Searching alignments...  [14.73s]
Deallocating buffers...  [0.209s]
Clearing query masking...  [0.438s]
Opening temporary output file...  [0.001s]
Computing alignments...  [65.258s]
Deallocating reference...  [0.048s]
Loading reference sequences...  [1.957s]
Masking reference...  [1.238s]
Initializing temporary storage...  [0.012s]
Building reference histograms...  [0.497s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/11, shape 1/2.
Building reference seed array...  [0.417s]
Building query seed array...  [1.086s]
Computing hash join...  [1.956s]
Building seed filter...  [0.1s]
Searching alignments...  [1.704s]
Processing query block 1, reference block 11/11, shape 2/2.
Building reference seed array...  [0.401s]
Building query seed array...  [1.06s]
Computing hash join...  [1.959s]
Building seed filter...  [0.094s]
Searching alignments...  [1.667s]
Deallocating buffers...  [0.015s]
Clearing query masking...  [0.462s]
Opening temporary output file...  [0.001s]
Computing alignments...  [11.897s]
Deallocating reference...  [0.004s]
Loading reference sequences...  [0.211s]
Deallocating buffers...  [0.033s]
Joining output blocks...  [6.318s]
Deallocating queries...  [0.014s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0.071s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 1883.05s
Reported 571779 pairwise alignments, 571779 HSPs.
95418 queries aligned.