diamond v2.0.4.142 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 28
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Opening the database...  [0.365s]
Percentage range of top alignment score to report hits: 5
Reference = /gscratch/srlab/blastdbs/ncbi-nr-20190925/nr.dmnd
Sequences = 221150606
Letters = 80477796956
Block size = 8000000000
Opening the input file...  [0.042s]
Opening the output file...  [0.001s]
Loading query sequences...  [0.95s]
Masking queries...  [0.455s]
Building query seed set...  [0.074s]
Algorithm: Double-indexed
Building query histograms...  [0.14s]
Allocating buffers...  [0s]
Loading reference sequences...  [153.442s]
Masking reference...  [19.158s]
Initializing temporary storage...  [0.021s]
Building reference histograms...  [7.482s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/11, shape 1/2.
Building reference seed array...  [6.759s]
Building query seed array...  [0.116s]
Computing hash join...  [5.667s]
Building seed filter...  [0.104s]
Searching alignments...  [1.868s]
Processing query block 1, reference block 1/11, shape 2/2.
Building reference seed array...  [6.214s]
Building query seed array...  [0.1s]
Computing hash join...  [5.974s]
Building seed filter...  [0.091s]
Searching alignments...  [1.838s]
Deallocating buffers...  [0.388s]
Clearing query masking...  [0.029s]
Opening temporary output file...  [0.001s]
Computing alignments...  [6.57s]
Deallocating reference...  [0.068s]
Loading reference sequences...  [125.334s]
Masking reference...  [19.488s]
Initializing temporary storage...  [0.011s]
Building reference histograms...  [7.324s]
Allocating buffers...  [0s]
Processing query block 1, reference block 2/11, shape 1/2.
Building reference seed array...  [6.564s]
Building query seed array...  [0.199s]
Computing hash join...  [5.632s]
Building seed filter...  [0.104s]
Searching alignments...  [1.682s]
Processing query block 1, reference block 2/11, shape 2/2.
Building reference seed array...  [6.23s]
Building query seed array...  [0.118s]
Computing hash join...  [6.013s]
Building seed filter...  [0.083s]
Searching alignments...  [1.648s]
Deallocating buffers...  [0.404s]
Clearing query masking...  [0.032s]
Opening temporary output file...  [0.001s]
Computing alignments...  [4.37s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [19.499s]
Masking reference...  [18.671s]
Initializing temporary storage...  [0.011s]
Building reference histograms...  [7.211s]
Allocating buffers...  [0s]
Processing query block 1, reference block 3/11, shape 1/2.
Building reference seed array...  [6.571s]
Building query seed array...  [0.123s]
Computing hash join...  [5.536s]
Building seed filter...  [0.082s]
Searching alignments...  [1.91s]
Processing query block 1, reference block 3/11, shape 2/2.
Building reference seed array...  [6.093s]
Building query seed array...  [0.098s]
Computing hash join...  [5.818s]
Building seed filter...  [0.084s]
Searching alignments...  [1.851s]
Deallocating buffers...  [0.21s]
Clearing query masking...  [0.037s]
Opening temporary output file...  [0.001s]
Computing alignments...  [4.617s]
Deallocating reference...  [0.051s]
Loading reference sequences...  [18.903s]
Masking reference...  [18.694s]
Initializing temporary storage...  [0.013s]
Building reference histograms...  [7.3s]
Allocating buffers...  [0s]
Processing query block 1, reference block 4/11, shape 1/2.
Building reference seed array...  [6.559s]
Building query seed array...  [0.156s]
Computing hash join...  [5.577s]
Building seed filter...  [0.084s]
Searching alignments...  [2.03s]
Processing query block 1, reference block 4/11, shape 2/2.
Building reference seed array...  [6.125s]
Building query seed array...  [0.116s]
Computing hash join...  [5.802s]
Building seed filter...  [0.087s]
Searching alignments...  [1.978s]
Deallocating buffers...  [0.184s]
Clearing query masking...  [0.031s]
Opening temporary output file...  [0.002s]
Computing alignments...  [5.307s]
Deallocating reference...  [0.049s]
Loading reference sequences...  [16.161s]
Masking reference...  [19.493s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [6.999s]
Allocating buffers...  [0s]
Processing query block 1, reference block 5/11, shape 1/2.
Building reference seed array...  [6.537s]
Building query seed array...  [0.159s]
Computing hash join...  [5.584s]
Building seed filter...  [0.098s]
Searching alignments...  [1.817s]
Processing query block 1, reference block 5/11, shape 2/2.
Building reference seed array...  [6.089s]
Building query seed array...  [0.113s]
Computing hash join...  [5.821s]
Building seed filter...  [0.081s]
Searching alignments...  [1.79s]
Deallocating buffers...  [0.205s]
Clearing query masking...  [0.031s]
Opening temporary output file...  [0.001s]
Computing alignments...  [5.108s]
Deallocating reference...  [0.042s]
Loading reference sequences...  [17.967s]
Masking reference...  [19.365s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.277s]
Allocating buffers...  [0s]
Processing query block 1, reference block 6/11, shape 1/2.
Building reference seed array...  [6.564s]
Building query seed array...  [0.15s]
Computing hash join...  [5.398s]
Building seed filter...  [0.101s]
Searching alignments...  [1.815s]
Processing query block 1, reference block 6/11, shape 2/2.
Building reference seed array...  [6.065s]
Building query seed array...  [0.098s]
Computing hash join...  [5.574s]
Building seed filter...  [0.082s]
Searching alignments...  [1.789s]
Deallocating buffers...  [0.206s]
Clearing query masking...  [0.031s]
Opening temporary output file...  [0.001s]
Computing alignments...  [4.814s]
Deallocating reference...  [0.046s]
Loading reference sequences...  [16.809s]
Masking reference...  [19.445s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [7.269s]
Allocating buffers...  [0s]
Processing query block 1, reference block 7/11, shape 1/2.
Building reference seed array...  [6.554s]
Building query seed array...  [0.153s]
Computing hash join...  [5.555s]
Building seed filter...  [0.083s]
Searching alignments...  [1.932s]
Processing query block 1, reference block 7/11, shape 2/2.
Building reference seed array...  [6.087s]
Building query seed array...  [0.101s]
Computing hash join...  [5.744s]
Building seed filter...  [0.084s]
Searching alignments...  [1.869s]
Deallocating buffers...  [0.206s]
Clearing query masking...  [0.031s]
Opening temporary output file...  [0.001s]
Computing alignments...  [4.632s]
Deallocating reference...  [0.043s]
Loading reference sequences...  [17.239s]
Masking reference...  [19.454s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [7.322s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/11, shape 1/2.
Building reference seed array...  [6.623s]
Building query seed array...  [0.146s]
Computing hash join...  [5.499s]
Building seed filter...  [0.104s]
Searching alignments...  [1.82s]
Processing query block 1, reference block 8/11, shape 2/2.
Building reference seed array...  [6.154s]
Building query seed array...  [0.099s]
Computing hash join...  [5.688s]
Building seed filter...  [0.085s]
Searching alignments...  [1.825s]
Deallocating buffers...  [0.204s]
Clearing query masking...  [0.031s]
Opening temporary output file...  [0.001s]
Computing alignments...  [4.291s]
Deallocating reference...  [0.044s]
Loading reference sequences...  [16.153s]
Masking reference...  [19.563s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.238s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/11, shape 1/2.
Building reference seed array...  [6.628s]
Building query seed array...  [0.163s]
Computing hash join...  [5.498s]
Building seed filter...  [0.103s]
Searching alignments...  [1.787s]
Processing query block 1, reference block 9/11, shape 2/2.
Building reference seed array...  [6.12s]
Building query seed array...  [0.1s]
Computing hash join...  [5.686s]
Building seed filter...  [0.086s]
Searching alignments...  [1.759s]
Deallocating buffers...  [0.233s]
Clearing query masking...  [0.032s]
Opening temporary output file...  [0.001s]
Computing alignments...  [5.363s]
Deallocating reference...  [0.04s]
Loading reference sequences...  [17.246s]
Masking reference...  [19.658s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [7.311s]
Allocating buffers...  [0s]
Processing query block 1, reference block 10/11, shape 1/2.
Building reference seed array...  [6.627s]
Building query seed array...  [0.137s]
Computing hash join...  [5.54s]
Building seed filter...  [0.102s]
Searching alignments...  [1.667s]
Processing query block 1, reference block 10/11, shape 2/2.
Building reference seed array...  [6.262s]
Building query seed array...  [0.097s]
Computing hash join...  [5.776s]
Building seed filter...  [0.085s]
Searching alignments...  [1.634s]
Deallocating buffers...  [0.509s]
Clearing query masking...  [0.031s]
Opening temporary output file...  [0.001s]
Computing alignments...  [4.418s]
Deallocating reference...  [0.048s]
Loading reference sequences...  [1.867s]
Masking reference...  [1.23s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [0.487s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/11, shape 1/2.
Building reference seed array...  [0.414s]
Building query seed array...  [0.123s]
Computing hash join...  [0.388s]
Building seed filter...  [0.011s]
Searching alignments...  [0.166s]
Processing query block 1, reference block 11/11, shape 2/2.
Building reference seed array...  [0.354s]
Building query seed array...  [0.085s]
Computing hash join...  [0.399s]
Building seed filter...  [0.011s]
Searching alignments...  [0.161s]
Deallocating buffers...  [0.011s]
Clearing query masking...  [0.031s]
Opening temporary output file...  [0.001s]
Computing alignments...  [0.772s]
Deallocating reference...  [0.003s]
Loading reference sequences...  [0.087s]
Deallocating buffers...  [0.045s]
Joining output blocks...  [0.19s]
Deallocating queries...  [0.005s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0.031s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 1028.38s
Reported 36539 pairwise alignments, 36539 HSPs.
6201 queries aligned.