diamond v2.0.4.142 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 28
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Opening the database...  [0.359s]
Percentage range of top alignment score to report hits: 5
Reference = /gscratch/srlab/blastdbs/ncbi-nr-20190925/nr.dmnd
Sequences = 221150606
Letters = 80477796956
Block size = 8000000000
Opening the input file...  [0.264s]
Opening the output file...  [0s]
Loading query sequences...  [13.725s]
Masking queries...  [5.691s]
Building query seed set...  [0.086s]
Algorithm: Double-indexed
Building query histograms...  [1.698s]
Allocating buffers...  [0s]
Loading reference sequences...  [256.495s]
Masking reference...  [19.203s]
Initializing temporary storage...  [0.013s]
Building reference histograms...  [7.332s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/11, shape 1/2.
Building reference seed array...  [6.724s]
Building query seed array...  [1.394s]
Computing hash join...  [11.079s]
Building seed filter...  [0.562s]
Searching alignments...  [16.69s]
Processing query block 1, reference block 1/11, shape 2/2.
Building reference seed array...  [7.176s]
Building query seed array...  [2.974s]
Computing hash join...  [11.162s]
Building seed filter...  [0.558s]
Searching alignments...  [16.284s]
Deallocating buffers...  [1.228s]
Clearing query masking...  [0.526s]
Opening temporary output file...  [0.025s]
Computing alignments...  [76.905s]
Deallocating reference...  [0.062s]
Loading reference sequences...  [16.874s]
Masking reference...  [19.019s]
Initializing temporary storage...  [0.011s]
Building reference histograms...  [7.164s]
Allocating buffers...  [0s]
Processing query block 1, reference block 2/11, shape 1/2.
Building reference seed array...  [6.593s]
Building query seed array...  [1.318s]
Computing hash join...  [11.392s]
Building seed filter...  [0.535s]
Searching alignments...  [15.797s]
Processing query block 1, reference block 2/11, shape 2/2.
Building reference seed array...  [6.147s]
Building query seed array...  [2.259s]
Computing hash join...  [10.796s]
Building seed filter...  [0.526s]
Searching alignments...  [15.472s]
Deallocating buffers...  [0.223s]
Clearing query masking...  [0.55s]
Opening temporary output file...  [0.001s]
Computing alignments...  [69.902s]
Deallocating reference...  [0.041s]
Loading reference sequences...  [19.49s]
Masking reference...  [19.607s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.275s]
Allocating buffers...  [0s]
Processing query block 1, reference block 3/11, shape 1/2.
Building reference seed array...  [6.729s]
Building query seed array...  [1.778s]
Computing hash join...  [10.815s]
Building seed filter...  [0.53s]
Searching alignments...  [15.948s]
Processing query block 1, reference block 3/11, shape 2/2.
Building reference seed array...  [6.137s]
Building query seed array...  [2.203s]
Computing hash join...  [10.866s]
Building seed filter...  [0.533s]
Searching alignments...  [15.615s]
Deallocating buffers...  [0.312s]
Clearing query masking...  [0.476s]
Opening temporary output file...  [0.03s]
Computing alignments...  [68.395s]
Deallocating reference...  [0.054s]
Loading reference sequences...  [19.633s]
Masking reference...  [19.623s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.096s]
Allocating buffers...  [0s]
Processing query block 1, reference block 4/11, shape 1/2.
Building reference seed array...  [6.558s]
Building query seed array...  [1.634s]
Computing hash join...  [11.343s]
Building seed filter...  [0.531s]
Searching alignments...  [16.161s]
Processing query block 1, reference block 4/11, shape 2/2.
Building reference seed array...  [6.09s]
Building query seed array...  [2.164s]
Computing hash join...  [11.289s]
Building seed filter...  [0.535s]
Searching alignments...  [15.944s]
Deallocating buffers...  [0.348s]
Clearing query masking...  [0.535s]
Opening temporary output file...  [0.001s]
Computing alignments...  [89.992s]
Deallocating reference...  [0.051s]
Loading reference sequences...  [16.338s]
Masking reference...  [19.563s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.261s]
Allocating buffers...  [0s]
Processing query block 1, reference block 5/11, shape 1/2.
Building reference seed array...  [6.652s]
Building query seed array...  [1.824s]
Computing hash join...  [11.376s]
Building seed filter...  [0.523s]
Searching alignments...  [15.713s]
Processing query block 1, reference block 5/11, shape 2/2.
Building reference seed array...  [6.147s]
Building query seed array...  [1.801s]
Computing hash join...  [11.476s]
Building seed filter...  [0.534s]
Searching alignments...  [15.507s]
Deallocating buffers...  [0.369s]
Clearing query masking...  [0.439s]
Opening temporary output file...  [0.001s]
Computing alignments...  [76.409s]
Deallocating reference...  [0.041s]
Loading reference sequences...  [18.517s]
Masking reference...  [19.392s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.178s]
Allocating buffers...  [0s]
Processing query block 1, reference block 6/11, shape 1/2.
Building reference seed array...  [6.681s]
Building query seed array...  [2.219s]
Computing hash join...  [11.407s]
Building seed filter...  [0.513s]
Searching alignments...  [15.741s]
Processing query block 1, reference block 6/11, shape 2/2.
Building reference seed array...  [6.415s]
Building query seed array...  [1.845s]
Computing hash join...  [11.656s]
Building seed filter...  [0.534s]
Searching alignments...  [15.506s]
Deallocating buffers...  [0.663s]
Clearing query masking...  [0.442s]
Opening temporary output file...  [0.001s]
Computing alignments...  [75.241s]
Deallocating reference...  [0.048s]
Loading reference sequences...  [16.932s]
Masking reference...  [19.606s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [7.19s]
Allocating buffers...  [0s]
Processing query block 1, reference block 7/11, shape 1/2.
Building reference seed array...  [6.606s]
Building query seed array...  [1.868s]
Computing hash join...  [11.385s]
Building seed filter...  [0.537s]
Searching alignments...  [16.342s]
Processing query block 1, reference block 7/11, shape 2/2.
Building reference seed array...  [6.261s]
Building query seed array...  [1.877s]
Computing hash join...  [11.681s]
Building seed filter...  [0.545s]
Searching alignments...  [16.18s]
Deallocating buffers...  [0.472s]
Clearing query masking...  [0.464s]
Opening temporary output file...  [0.001s]
Computing alignments...  [65.519s]
Deallocating reference...  [0.043s]
Loading reference sequences...  [17.333s]
Masking reference...  [19.617s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [7.108s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/11, shape 1/2.
Building reference seed array...  [6.64s]
Building query seed array...  [1.884s]
Computing hash join...  [11.426s]
Building seed filter...  [0.531s]
Searching alignments...  [15.876s]
Processing query block 1, reference block 8/11, shape 2/2.
Building reference seed array...  [6.286s]
Building query seed array...  [1.862s]
Computing hash join...  [11.702s]
Building seed filter...  [0.541s]
Searching alignments...  [15.58s]
Deallocating buffers...  [0.506s]
Clearing query masking...  [0.468s]
Opening temporary output file...  [0.001s]
Computing alignments...  [63.626s]
Deallocating reference...  [0.044s]
Loading reference sequences...  [16.199s]
Masking reference...  [19.58s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [7.118s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/11, shape 1/2.
Building reference seed array...  [6.667s]
Building query seed array...  [2.155s]
Computing hash join...  [11.422s]
Building seed filter...  [0.545s]
Searching alignments...  [16.466s]
Processing query block 1, reference block 9/11, shape 2/2.
Building reference seed array...  [6.368s]
Building query seed array...  [2.061s]
Computing hash join...  [11.689s]
Building seed filter...  [0.553s]
Searching alignments...  [15.865s]
Deallocating buffers...  [0.591s]
Clearing query masking...  [0.454s]
Opening temporary output file...  [0.001s]
Computing alignments...  [85.775s]
Deallocating reference...  [0.04s]
Loading reference sequences...  [17.57s]
Masking reference...  [19.628s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [7.089s]
Allocating buffers...  [0s]
Processing query block 1, reference block 10/11, shape 1/2.
Building reference seed array...  [6.699s]
Building query seed array...  [2.036s]
Computing hash join...  [11.499s]
Building seed filter...  [0.567s]
Searching alignments...  [15.83s]
Processing query block 1, reference block 10/11, shape 2/2.
Building reference seed array...  [6.304s]
Building query seed array...  [1.974s]
Computing hash join...  [11.317s]
Building seed filter...  [0.54s]
Searching alignments...  [15.64s]
Deallocating buffers...  [0.533s]
Clearing query masking...  [0.514s]
Opening temporary output file...  [0.002s]
Computing alignments...  [69.284s]
Deallocating reference...  [0.044s]
Loading reference sequences...  [1.973s]
Masking reference...  [1.244s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [0.469s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/11, shape 1/2.
Building reference seed array...  [0.42s]
Building query seed array...  [2.152s]
Computing hash join...  [2.114s]
Building seed filter...  [0.143s]
Searching alignments...  [1.785s]
Processing query block 1, reference block 11/11, shape 2/2.
Building reference seed array...  [0.399s]
Building query seed array...  [1.748s]
Computing hash join...  [2.127s]
Building seed filter...  [0.104s]
Searching alignments...  [1.772s]
Deallocating buffers...  [0.015s]
Clearing query masking...  [1.192s]
Opening temporary output file...  [0.456s]
Computing alignments...  [12.678s]
Deallocating reference...  [0.006s]
Loading reference sequences...  [0.335s]
Deallocating buffers...  [1.386s]
Joining output blocks...  [8.5s]
Deallocating queries...  [0.026s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0.06s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 2221.97s
Reported 605503 pairwise alignments, 605503 HSPs.
101650 queries aligned.