Summary Statistics

Plots

Histogram of read lengths

Histogram of read lengths after log transformation

Weighted Histogram of read lengths

Weighted Histogram of read lengths after log transformation

Dynamic histogram of Read length

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation

Number of reads generated per channel

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of read lengths over time

Violin plot of quality over time

Violin plot of sequencing speed over time

NanoPlot report

Summary statistics

feature
General summary
Active channels 491.0
Mean read length 821.6
Mean read quality 10.1
Median read length 533.0
Median read quality 10.6
Number of reads 78,720.0
Read length N50 1,254.0
Total bases 64,672,912.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 73315 (93.1%) 60.5Mb
>Q7 67186 (85.3%) 56.5Mb
>Q10 46724 (59.4%) 41.4Mb
>Q12 20961 (26.6%) 20.6Mb
>Q15 966 (1.2%) 0.8Mb
Top 5 highest mean basecall quality scores and their read lengths
1 22.0 (682)
2 19.8 (471)
3 19.1 (414)
4 19.1 (1539)
5 19.0 (234)
Top 5 longest reads and their mean basecall quality score
1 62629 (3.3)
2 51173 (3.5)
3 45909 (3.0)
4 44689 (3.4)
5 42633 (3.0)

Plots

Histogram of read lengths





Histogram of read lengths after log transformation





Weighted Histogram of read lengths





Weighted Histogram of read lengths after log transformation





Dynamic histogram of Read length





Yield by length





Read lengths vs Average read quality plot using dots





Read lengths vs Average read quality plot using a kernel density estimation





Number of reads generated per channel





Cumulative yield





Cumulative yield





Number of reads over time





Number of active pores over time





Violin plot of read lengths over time





Violin plot of quality over time





Violin plot of sequencing speed over time