diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.075717s] #Target sequences to report alignments for: 1 Opening the input file... [0.008671s] Opening the output file... [0.000456s] Loading query sequences... [0.551638s] Masking queries... [0.383029s] Building query seed set... [0.080959s] Algorithm: Double-indexed Building query histograms... [0.092658s] Allocating buffers... [0.000678s] Loading reference sequences... [3.62318s] Masking reference... [0.952234s] Initializing temporary storage... [0.013155s] Building reference histograms... [0.210752s] Allocating buffers... [9.4e-05s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.169948s] Building query seed array... [0.078446s] Computing hash join... [0.066713s] Building seed filter... [0.001692s] Searching alignments... [0.075164s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.173618s] Building query seed array... [0.079684s] Computing hash join... [0.039309s] Building seed filter... [0.001695s] Searching alignments... [0.066201s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.179108s] Building query seed array... [0.077877s] Computing hash join... [0.036023s] Building seed filter... [0.001681s] Searching alignments... [0.069255s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.144742s] Building query seed array... [0.064928s] Computing hash join... [0.039261s] Building seed filter... [0.001723s] Searching alignments... [0.069391s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.186034s] Building query seed array... [0.09131s] Computing hash join... [0.040887s] Building seed filter... [0.001709s] Searching alignments... [0.067465s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.189109s] Building query seed array... [0.07839s] Computing hash join... [0.05009s] Building seed filter... [0.00177s] Searching alignments... [0.071777s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.184612s] Building query seed array... [0.076357s] Computing hash join... [0.041511s] Building seed filter... [0.001834s] Searching alignments... [0.064148s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.139858s] Building query seed array... [0.061936s] Computing hash join... [0.04133s] Building seed filter... [0.001704s] Searching alignments... [0.064352s] Deallocating buffers... [0.001465s] Computing alignments... [1.49897s] Deallocating reference... [0.001429s] Loading reference sequences... [4.7e-05s] Deallocating buffers... [0.000464s] Deallocating queries... [0.000635s] Loading query sequences... [2.4e-05s] Closing the input file... [2.7e-05s] Closing the output file... [0.000205s] Closing the database file... [3.2e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 10.3945s Reported 23037 pairwise alignments, 23681 HSPs. 23037 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.065794s] #Target sequences to report alignments for: 1 Opening the input file... [9.2e-05s] Opening the output file... [0.001224s] Loading query sequences... [0.266447s] Masking queries... [0.232638s] Building query seed set... [0.083477s] Algorithm: Double-indexed Building query histograms... [0.073508s] Allocating buffers... [0.000671s] Loading reference sequences... [3.57724s] Masking reference... [0.922s] Initializing temporary storage... [0.0039s] Building reference histograms... [0.227828s] Allocating buffers... [9.1e-05s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.162008s] Building query seed array... [0.051004s] Computing hash join... [0.070838s] Building seed filter... [0.001415s] Searching alignments... [0.065583s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.176096s] Building query seed array... [0.051835s] Computing hash join... [0.034981s] Building seed filter... [0.001646s] Searching alignments... [0.061117s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.183684s] Building query seed array... [0.052054s] Computing hash join... [0.038622s] Building seed filter... [0.001407s] Searching alignments... [0.056391s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.148827s] Building query seed array... [0.043031s] Computing hash join... [0.030457s] Building seed filter... [0.002424s] Searching alignments... [0.052749s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.138507s] Building query seed array... [0.041406s] Computing hash join... [0.027701s] Building seed filter... [0.001369s] Searching alignments... [0.042436s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.173188s] Building query seed array... [0.055255s] Computing hash join... [0.034268s] Building seed filter... [0.001282s] Searching alignments... [0.052584s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.179143s] Building query seed array... [0.054153s] Computing hash join... [0.03489s] Building seed filter... [0.001351s] Searching alignments... [0.04289s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.189697s] Building query seed array... [0.044861s] Computing hash join... [0.037125s] Building seed filter... [0.001462s] Searching alignments... [0.049759s] Deallocating buffers... [0.001621s] Computing alignments... [1.18046s] Deallocating reference... [0.001723s] Loading reference sequences... [7.1e-05s] Deallocating buffers... [0.000546s] Deallocating queries... [0.000778s] Loading query sequences... [4.8e-05s] Closing the input file... [5.3e-05s] Closing the output file... [0.000623s] Closing the database file... [7e-05s] Deallocating taxonomy... [2.6e-05s] Total time = 9.14713s Reported 14743 pairwise alignments, 15105 HSPs. 14743 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.042983s] #Target sequences to report alignments for: 1 Opening the input file... [0.006458s] Opening the output file... [0.000298s] Loading query sequences... [0.79231s] Masking queries... [0.664728s] Building query seed set... [0.117123s] Algorithm: Double-indexed Building query histograms... [0.152493s] Allocating buffers... [0.000535s] Loading reference sequences... [1.33291s] Masking reference... [0.914748s] Initializing temporary storage... [0.003853s] Building reference histograms... [0.234486s] Allocating buffers... [0.000166s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.183398s] Building query seed array... [0.123548s] Computing hash join... [0.075206s] Building seed filter... [0.001703s] Searching alignments... [0.101709s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.177467s] Building query seed array... [0.129729s] Computing hash join... [0.063395s] Building seed filter... [0.001798s] Searching alignments... [0.096377s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.186154s] Building query seed array... [0.124208s] Computing hash join... [0.057669s] Building seed filter... [0.001717s] Searching alignments... [0.089792s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.185356s] Building query seed array... [0.115419s] Computing hash join... [0.052586s] Building seed filter... [0.001646s] Searching alignments... [0.086058s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.169534s] Building query seed array... [0.117229s] Computing hash join... [0.044978s] Building seed filter... [0.001697s] Searching alignments... [0.066952s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.174789s] Building query seed array... [0.137625s] Computing hash join... [0.060032s] Building seed filter... [0.001768s] Searching alignments... [0.10499s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.218489s] Building query seed array... [0.152219s] Computing hash join... [0.059982s] Building seed filter... [0.001863s] Searching alignments... [0.075926s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.144381s] Building query seed array... [0.082478s] Computing hash join... [0.053626s] Building seed filter... [0.001719s] Searching alignments... [0.09191s] Deallocating buffers... [0.002244s] Computing alignments... [2.09004s] Deallocating reference... [0.00136s] Loading reference sequences... [4.7e-05s] Deallocating buffers... [0.001129s] Deallocating queries... [0.000972s] Loading query sequences... [2.6e-05s] Closing the input file... [2.7e-05s] Closing the output file... [0.000504s] Closing the database file... [2.2e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 9.98077s Reported 16562 pairwise alignments, 16708 HSPs. 16562 queries aligned. diamond v0.9.29.130 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.000101s] #Target sequences to report alignments for: 1 Opening the input file... [4.6e-05s] Opening the output file... [0.000234s] Loading query sequences... [0.691919s] Masking queries... [0.641013s] Building query seed set... [0.109218s] Algorithm: Double-indexed Building query histograms... [0.156485s] Allocating buffers... [0.000593s] Loading reference sequences... [0.72736s] Masking reference... [0.921767s] Initializing temporary storage... [0.004121s] Building reference histograms... [0.217653s] Allocating buffers... [0.000192s] Processing query block 0, reference block 0, shape 0, index chunk 0. Building reference seed array... [0.163624s] Building query seed array... [0.110678s] Computing hash join... [0.060772s] Building seed filter... [0.001559s] Searching alignments... [0.086043s] Processing query block 0, reference block 0, shape 0, index chunk 1. Building reference seed array... [0.17522s] Building query seed array... [0.133679s] Computing hash join... [0.04331s] Building seed filter... [0.001617s] Searching alignments... [0.080913s] Processing query block 0, reference block 0, shape 0, index chunk 2. Building reference seed array... [0.176601s] Building query seed array... [0.183319s] Computing hash join... [0.05345s] Building seed filter... [0.001766s] Searching alignments... [0.112485s] Processing query block 0, reference block 0, shape 0, index chunk 3. Building reference seed array... [0.164922s] Building query seed array... [0.122757s] Computing hash join... [0.04168s] Building seed filter... [0.001595s] Searching alignments... [0.092272s] Processing query block 0, reference block 0, shape 1, index chunk 0. Building reference seed array... [0.170412s] Building query seed array... [0.113163s] Computing hash join... [0.038393s] Building seed filter... [0.001545s] Searching alignments... [0.176161s] Processing query block 0, reference block 0, shape 1, index chunk 1. Building reference seed array... [0.211495s] Building query seed array... [0.118634s] Computing hash join... [0.046014s] Building seed filter... [0.001581s] Searching alignments... [0.087466s] Processing query block 0, reference block 0, shape 1, index chunk 2. Building reference seed array... [0.210234s] Building query seed array... [0.137516s] Computing hash join... [0.044942s] Building seed filter... [0.001697s] Searching alignments... [0.094723s] Processing query block 0, reference block 0, shape 1, index chunk 3. Building reference seed array... [0.191847s] Building query seed array... [0.115241s] Computing hash join... [0.044751s] Building seed filter... [0.001648s] Searching alignments... [0.083177s] Deallocating buffers... [0.002267s] Computing alignments... [2.10188s] Deallocating reference... [0.001232s] Loading reference sequences... [5.8e-05s] Deallocating buffers... [0.000734s] Deallocating queries... [0.001012s] Loading query sequences... [2.3e-05s] Closing the input file... [2.7e-05s] Closing the output file... [0.000182s] Closing the database file... [2.2e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 9.2808s Reported 16353 pairwise alignments, 16471 HSPs. 16353 queries aligned.